BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G27695.1

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472974 jgi|Araly1|472974|fgenesh2_kg.1__2928__AT1G27695.1         621    1e-177


> Ahg472974 jgi|Araly1|472974|fgenesh2_kg.1__2928__AT1G27695.1
Length=435

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 391/417 (94%), Gaps = 5/417 (1%)
 Strand=Plus/Plus

Query  53   TAGAGAGAGCAATCTACCAGATTCACCGATTACCAACAACAAACAAGATCACTATGGTGC  112
            ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct  22   TAGAGAGAGCAATCTACCAGATTCACCGATTACCACCAACAAACAAGATCATTATGGTGC  81

Query  113  TCTCTGACTTCACTGGAGTCGGTGTTGGATTTGGGTTCGGTGTTGGTTGTGGATTTGGCG  172
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  82   TCTCTGACTTCACTGGAGTCGGTGTTGGATTTGGATTCGGTGTTGGTTGTGGATTTGGCG  141

Query  173  TTGGATGGGGTTTTGGAGGAATGCCTATGAACATCTTAGGTGTTGGTGCTGGTGGCGGTT  232
            |||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||
Sbjct  142  TTGGATGGGGTTTTGGAGGAATGCCTTTGAACATTTTAGGTGTTGGAGCAGGTGGCGGTT  201

Query  233  GCGGGGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCGTTTGGGAGTCACTATCGTT  292
            |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  202  GCGGTGTGGGTTTGGGCCTCGGGTGGGGTTTCGGGACTGCCTTTGGGAGTCACTACCGTT  261

Query  293  CATCTAGACTTACATTTCAAGGCATCGAGTTAGAGACTGCCGATAAACGGGAGGAGGTGG  352
            ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  ||
Sbjct  262  CATCTAGACTTACTTTTCAAGGCATCGAGTTAGAGACTACCGATAAACGGGAGGAGAAGG  321

Query  353  TGGCTAACATGTCCAAAAACTCCACTTAAGCAGTCGTGTGCTTCAATACTCTGCTCGGAT  412
            |||||||||||||| ||||| |||||||||||| ||||  ||||||||||||||| ||||
Sbjct  322  TGGCTAACATGTCCTAAAACACCACTTAAGCAGCCGTG--CTTCAATACTCTGCTAGGAT  379

Query  413  TGATTGTAAA-AGAATTCTGACACCTTTTCTTAT-TTCTCAATGAAACGGTTACTTC  467
            |||||||||| | || ||||||| |||||||||| |||||||||||||| |||||||
Sbjct  380  TGATTGTAAACA-AAGTCTGACATCTTTTCTTATATTCTCAATGAAACGATTACTTC  435



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19306728034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5