BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27700.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472976 jgi|Araly1|472976|fgenesh2_kg.1__2930__AT1G27700.1 1724 0.0
> Ahg472976 jgi|Araly1|472976|fgenesh2_kg.1__2930__AT1G27700.1
Length=1152
Score = 1724 bits (933), Expect = 0.0
Identities = 1029/1075 (96%), Gaps = 8/1075 (1%)
Strand=Plus/Plus
Query 137 ATCTGCTCAAGTGATGACGACGAGTTTGGATCGGTGGGAGAAAGATCCTTTCTTTCCCGC 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 ATCTGCTCAAGTGATGACGACGAGTTTGGATCGGTGGGAGAAAGATCCTTTCTTTCCCGC 142
Query 197 TGCTGAAGAAGTTCAGGAATCTGCCGACAGGATGGAGTCAGCGTACAGGACATGGCTCAA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 143 TGCTGAAGAAGTTCAGGAATCTGCCGACAGGATGGAGTCAGCGTACAGGACATGGATCAA 202
Query 257 TGGGAAACGAGACTCTTCAAAAGTATGGGACTCTGAGCAGCTTCATAGAGATCTTCACGC 316
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 203 TGGGAAACGAGACTCTTCAAATGTATGGGACTCTGATCAGCTTCACAGAGATCTTCACGC 262
Query 317 AGCTCTTGGAACCACCAAATGGCAGTTAGATGAATTCCAAAAAGCTGTCAAATCTAGCTA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 AGCTCTTGGAACCACCAAATGGCAGTTAGATGAATTCCAAAAAGCTGTCAAATCTAGCTA 322
Query 377 TGACAATCGTTTGAGTGATGAAACTAGAGATAGGCATCGTGAGTTTACTTTCGTAATGGA 436
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 323 TGACAATCGTTTGAGTGGTGAAACTAGAGATAGGCATCGTGAGTTTACTTTCGCAATGGA 382
Query 437 AGCTCAAGTGTCGAAAATCGAGAAA-TCTCTCAAGGAAGCTGCGCAATCCGATGGGAAAG 495
|||||| |||||||||||||| ||| |||||||||||||| |||||||| ||||| ||||
Sbjct 383 AGCTCAGGTGTCGAAAATCGA-AAAGTCTCTCAAGGAAGCGGCGCAATCTGATGGCAAAG 441
Query 496 GAACACCGAGATGGGTTCGTTTGGATGAAGATGATCGTAATGAGCTTGCTCTCTTCTTGA 555
|||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 442 GAACTCCGAGATGGGTCCGTTTGGATGAAGATGATCGTAATGAGCTTGCCCTTTTCTTGA 501
Query 556 CTGGTCCATCTGAATCTG-CTAAAGCAAATCCTAATGGACATAGAAGGACTGCAAGTGCT 614
|||| ||||||||||||| | |||| |||||| ||||||||||||||||| |||||||||
Sbjct 502 CTGGACCATCTGAATCTGTC-AAAGTAAATCCGAATGGACATAGAAGGACGGCAAGTGCT 560
Query 615 GCTGAATTCAGTGCTTGGAACATTGCGGTTTCTGATGATGGTTTAGTGAAGAAATCTTGT 674
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 561 GCTGAATTCAGTGCTTGGAACATTGCGGTTTCTGATGATGGTTTAGTGAAGAAATCTTCT 620
Query 675 GATGAGCCAGTGGTTCGACCTCCGAGGAAAGTACCTAGCTTCTCTGGATTCTTGAATTAT 734
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 621 GATGAGCCAGTGGTTCGACCTCCGAGGAAAGTACCTAGCTTCTCTGGGTTCTTAAATTAT 680
Query 735 ATGGATCCTGTGTCCAAGCATTGCAATAGAAAGTGGAAGGGTTTAGATCGTCAAGGAGAC 794
|||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 681 ATGGATCCTGGGTCCAACCATTGCAATAGAAAGTGGAAGGCTTTAGATCGTCAAGGAGAC 740
Query 795 TCTGATGCTGCTTTATTACCTATCCAAGCTAACCAACAAGATATGAATGGATGT-TCAGA 853
|| |||||||| |||||||||||||||||||||||||||| |||||||||| || | |||
Sbjct 741 TCCGATGCTGCCTTATTACCTATCCAAGCTAACCAACAAGTTATGAATGGAAGTCT-AGA 799
Query 854 GAGGGGCAAGAGTTGTATGGAGTGTGAGGAGGACTGTTATGAAAAGCAGCTTCATGGTTG 913
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 800 GAAGGGCAAGAGTTGTATGGAGTGTGAGGAGGACTGTTATGAAAAGCAGCTTCACGGTTG 859
Query 914 GTATGGAGCTCTACAGAGGCAACTCCAACGGTCTCAGTATCGAATGCGATATAGTAAATC 973
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 860 GTATGGAGCTCTACAGAGGCAACTTCAACGGTCTCAGTATCGAATGCGATATAGTAAATC 919
Query 974 GGTTCACGCTGCAATTTGGATTATTCTTTTAGTTTTTCTTATTGTGGTAGTTGCAGTGCA 1033
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 920 GGTTCACGCTGCAATTTGGATTATTCTTTTAGTTTTTCTTATTGTGGTAGTCGCAGTGCA 979
Query 1034 TTCAATGTAGAAGAGAGGTTTGGAATAGCAAGGTTCGAGTTCATTCATCTTCTGTGTAAC 1093
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 980 TTCAATGTAGAAGACAGGTTTGGAATAGCAGGGTTCGAGTTCATTCATCTTATGTGTAAC 1039
Query 1094 AGCGAAAGAGACGAATTTGGCAATCCACATTTTTACTGTACAGTAAATTCCAACTGTTTT 1153
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1040 GGCGAAAGAGACGAATTTGGGAATCCACATTTTTACTGTACAGTAAATTCCA-CTGTTTT 1098
Query 1154 TGGTTGTTTGTAATATAGAAATGCAtttttttGGTTCGATTATTTGAAACGGGTT 1208
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1099 TTGTTGTTTGTAATATAGAAATGCATTTTTT-GGTTCGATTATTTGAAACGGGTT 1152
Score = 87.9 bits (47), Expect = 2e-16
Identities = 82/96 (85%), Gaps = 13/96 (14%)
Strand=Plus/Plus
Query 22 GAACGTTCCCTCTCTTCTCTGAAATCTTTCTCGATCCATCCATCTTCTCCATTTTCCTCC 81
||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 GAACGTTCCCTCTCTTCTCTGAAATCTTTCTCG--------A-----TCCATTTTCCTCC 47
Query 82 ATTTCTGGGTTTCTTCTCATCTTCCAAGGATTAGGA 117
|||||||||||||||||| |||||||||||||||||
Sbjct 48 ATTTCTGGGTTTCTTCTCGTCTTCCAAGGATTAGGA 83
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5