BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27710.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335913 jgi|Araly1|335913|fgenesh1_pg.C_scaffold_1002478 706 0.0
> Ahg335913 jgi|Araly1|335913|fgenesh1_pg.C_scaffold_1002478
Length=624
Score = 706 bits (382), Expect = 0.0
Identities = 568/651 (87%), Gaps = 39/651 (6%)
Strand=Plus/Plus
Query 77 ATGGCTAGAGTGATCTTGTGGTTTCTTGTTTCCTCGTATCTTTGTCTCATCGGTCATATG 136
|||||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||
Sbjct 1 ATGGCTAGAGTGATGTTGTGGTTTCTTGTTTCCTTGTATCTATGCCTCATTGGTCATATG 60
Query 137 ATTGCCGAGGCTGCAAGAGAAGGTGCCTCCATGAGGAAGGAAGCACACTCCAGTGGGATT 196
|||||||||||||||||||||||||| ||||||| ||||| ||| ||||||| || ||||
Sbjct 61 ATTGCCGAGGCTGCAAGAGAAGGTGCGTCCATGAAGAAGGTAGCCCACTCCACTGAGATT 120
Query 197 GGAAGAGAAAGTAAGC-T-CATGAGGAATGAAAAACACTCCACTGAGATTGGAAGAGAAA 254
|||||||||||| || | |||||||||| || || ||||||||||||||||| |||||
Sbjct 121 GGAAGAGAAAGT--GCGTCCATGAGGAATCAAGCACGCTCCACTGAGATTGGAAAAGAAA 178
Query 255 GTGCGTCCATGAGGAATAAAGCACGCTCGAGTGAGATTGGAAGAGAGAGTAAGCTCATGA 314
|||||||||||| |||| |||||||||| |||||||||||| |||| |||||||||||||
Sbjct 179 GTGCGTCCATGATGAATCAAGCACGCTCCAGTGAGATTGGACGAGAAAGTAAGCTCATGA 238
Query 315 GGAATGAAGCACACTCCAGTG---AGATTGGAAAGAGTATCCGACACGTAACCGGATTTA 371
|||||| | |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 239 GGAATGGACCACACTCCAGTGCTCAGATTGGAAAGAGTATGGGACACGTAACCGGATTTA 298
Query 372 AGGGTGAACTCACAGCTGGTGGCTAcggcggtggaggcccgggatatggtggtggtgg-- 429
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 299 AGGGTGAACTCACAGCTGGTGGCTATGGCGGTGGAGGCCCGGGCTATGGTGGTGGTGGTG 358
Query 430 -atacggtccaggtggcggcggtggtggtgttgtaatcggtggtggatttggtggaggtg 488
|||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 359 GATACGGGCCAGGTGGTGGCGGTGGTGGTGTTGTAATCGGTGGTGGATTTGGCGGTGGTG 418
Query 489 ccgggtatggttcaggtggtggtttgggttgggatggaGGCAACggaggtggtggtccag 548
|||||||| || ||||||||||||||||||||||||||||||||||||||| || |
Sbjct 419 GTGGGTATGGGTCCGGTGGTGGTTTGGGTTGGGATGGAGGCAACGGAGGTGGT---CCGG 475
Query 549 gatacgggtcaggtggaggaggtattggtggtggagg-aggtattggtggtggagtcatc 607
|||||||||||||||| |||||||||||||| | ||||| ||||| |
Sbjct 476 GATACGGGTCAGGTGG------TATTGGTGGTGGAGTCATC-ATTGGCGGTGG--T---- 522
Query 608 attggcggtggtggtggaggatgcggaggtTCATGCAGCGGAGGCGGTGGTGGTGG---A 664
|| |||||||||| | || | ||||||||| ||||||||||||||||||| |
Sbjct 523 ---GG---TGGTGGTGGATG-TG-GC-GGTTCATGCGGCGGAGGCGGTGGTGGTGGTGGA 573
Query 665 GGAGGATATGGACACGGCGGAGTCAGCACGAAGGGATCAGGCAAAAACTAG 715
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 574 GGAGGATATGGACACGGCGGAGTCATCACGAAGGGATCAGGCAAAAACTAG 624
Score = 145 bits (78), Expect = 7e-34
Identities = 103/115 (90%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 230 CACTCCACTGAGATTGGAAGAGAAAGTGCGTCCATGAGGAATAAAGCACGCTCGAGTGAG 289
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 106 CACTCCACTGAGATTGGAAGAGAAAGTGCGTCCATGAGGAATCAAGCACGCTCCACTGAG 165
Query 290 ATTGGAAGAGAGAGTAAGCTC-ATGAGGAATGAAGCACACTCCAGTGAGATTGGA 343
||||||| ||| ||| | || |||| |||| |||||| ||||||||||||||||
Sbjct 166 ATTGGAAAAGAAAGTGCG-TCCATGATGAATCAAGCACGCTCCAGTGAGATTGGA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5