BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27720.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472977 jgi|Araly1|472977|fgenesh2_kg.1__2931__AT1G27720.1 2909 0.0
> Ahg472977 jgi|Araly1|472977|fgenesh2_kg.1__2931__AT1G27720.1
Length=2145
Score = 2909 bits (1575), Expect = 0.0
Identities = 1992/2185 (91%), Gaps = 62/2185 (3%)
Strand=Plus/Plus
Query 1 ATGGATCTCTCCATTGTCAAGCTCCTCGAAGAAGACGAAGAGGTTGACTCTAAGCATTCG 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGATCTCTCCATTGTCAAGCTCCTCGAAGAAGACGATGAGGTTGACTCTAAGCATTCG 60
Query 61 GAAGATGACTTGCAAA-TGTTTCAGGACTCTCTGATTCGAGATATTGAAGGAAGTAACTT 119
||| |||||||| ||| ||||||||||| ||||||||||||||||| |||| |
Sbjct 61 GAATATGACTTG-AAAGTGTTTCAGGACGCTCTGATTCGAGATATT----GAAG-----T 110
Query 120 GAAGTCTATAAACAATACTACTGGTAATGAATCAGAAAAACCGCAACCTCGGTATATGAA 179
| ||||||||||||| ||| |||| |||||||||||| |||||||||| |||||||||
Sbjct 111 GGTGTCTATAAACAATCCTATTGGTGATGAATCAGAAAGGCCGCAACCTCAGTATATGAA 170
Query 180 ACTGCAGAAGATGAGTAGCAAAGAGACTCCTTGGGTGGAAAAGACTGTTGACCCTGTGAA 239
||||||||||||||||||| || || ||| | |||||||| ||||||||||||| |||||
Sbjct 171 ACTGCAGAAGATGAGTAGCCAACAGGCTCATGGGGTGGAACAGACTGTTGACCCCGTGAA 230
Query 240 TCATAATCTTAGATTAGCACGAGT-TACTGATTTGCTTCGTACCGTGGTAG---ACCACC 295
|||| | ||| | |||||||||| | |||||||||||||| | ||| || ||||||
Sbjct 231 TCATGGTGTTACAGTAGCACGAGTGT-GTGATTTGCTTCGTATCTTGGAAGACCACCACC 289
Query 296 AACCCGGC-AA---A-A-AGACGCATTGTCTTAACCTGCATTATAAACTCAAGAGAAAAG 349
|||||| | || | | ||| || |||||||| |||| |||||||| ||||||||||||
Sbjct 290 AACCCGACAAAGTTATACAGATGCGTTGTCTTACCCTGTATTATAAAGTCAAGAGAAAAG 349
Query 350 AACTTACAATGGAAGAGTTCATGCGACAACTGAGAGATCTTGTAGGTGATCAGATAATCA 409
||||| |||| |||||||||||| |||||||| |||| | |||||||||| ||||| ||
Sbjct 350 AACTTTCAATACAAGAGTTCATGCAACAACTGAAAGATGTCGTAGGTGATCGGATAACCA 409
Query 410 GATCGGTAATTAGCCAACTGCCTCAGTTAAAACCGGGAAATATGGGGATCAAAGTACCTG 469
||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
Sbjct 410 GATCGCTAATTAGCCAACTGCATCAGTCAAAACAGGGAAATATGGGGATCAAAGTACCCG 469
Query 470 GACGCTCAAACCATGACAAAGTGTCTAAATCTGCTGAATTCACTGCTCAAGAATCTGATC 529
||||| |||||||||||||||||||||||||||||||| | | ||||||||||||||| |
Sbjct 470 GACGCCCAAACCATGACAAAGTGTCTAAATCTGCTGAAATAATTGCTCAAGAATCTGACC 529
Query 530 CTCGTGAAGTTCATGTTAACCAACTGTCTTCTACAACTTCAGGCACCTTAAACAGTTCAA 589
|| ||||||||||| ||||||||||| ||||||||| |||||||||||||| |||||||
Sbjct 530 CTTGTGAAGTTCATATTAACCAACTGCCTTCTACAAATTCAGGCACCTTAAGCAGTTCAG 589
Query 590 CTACTGTGCAGGGATTAAATAAGCATCCCGAGCA-ACACATGCAGCTTCCATCAAGTTCT 648
|||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 590 CTACTGCGCAGGGATTAAATAAGCATCCCGAG-ATACACATGCAGCTTCCATCAAGTTCT 648
Query 649 TTTCATATGGATACCAAATCTGGAAGTCTTAATCCATACCCAGGGACAAATGTCACTTCT 708
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 649 TTTCATATGTATACCAACTCTGGAAGTCTGAATCCATACCCAGGGACAAATGTCACTTCT 708
Query 709 CCTGGTTCATCATCGAGAGCAAAGCTCCCTGATTTCCAGCATAGGGAAAACAATCAGAAT 768
|||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 709 CCTGGTTCATCATCGAGAGCAAAGCTTCCTGATTTCCAGCACATGGAAAACAATCAGAAT 768
Query 769 GTGGGAATAGCCAGTGTTGGAGGACCAACCAAGTCTACAATAAACATGACGACAGTACCC 828
| |||| |||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 769 GCGGGACCAGCCAGTGTTGGAGGACCGACCAAGTCTACAGTAAACATGACGACAGTA--- 825
Query 829 AAGTTTGAGAGGCCAACTTTTGTAAATGGTCCAAGTAGGGTTCAGGATGGTCCTATATCC 888
|| | | | |||| ||| || || | |||||||||||||||||
Sbjct 826 AA-T--G-GT--CCAA-----GTA---GG-----GT----T-CAGGATGGTCCTATATCT 861
Query 889 GACTTCCCAAAGAACTCATCCTTTCCTCTATATTCTGCTCCTTGGCAAGGATCAGTCACC 948
||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 862 GACTTCCAAAAGAACTCATCCTTGCCTCTATACTCTGCTCCTTGGCGAGGATCAGTCACC 921
Query 949 AAGGACCATACAGTGGGACCTTCTTCATCAGTGATCCATGTGGAGCATAAATTGATTGAT 1008
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AAGGACCATACAGTGGGCCCTTCTTCATCAGTGATCCATGTGGAGCATAAATTGATTGAT 981
Query 1009 CAAAGTTTTGAACAGGCACATAAACCTCGTTATTTGGTGCAGCAAGGCGTGACTAATGTT 1068
|||| ||||||||||||||| || ||||||| |||||||||||| |||||||||||||||
Sbjct 982 CAAATTTTTGAACAGGCACAGAAGCCTCGTTCTTTGGTGCAGCATGGCGTGACTAATGTT 1041
Query 1069 CCACTGAAACAGAAGAATGCTATTCCAATTAGTTCAAATGATGACTTGGAGAAGCAGTCT 1128
|||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1042 CCACTGAAACAGAACAACGCTATTTTAATTAGTTCAAATGATGACTTGGAGAAGCAGTCT 1101
Query 1129 TCTAAAATGGGTTTATTCACATCAACCAC-TTCTGCCAGCTCTGTTTTTCCTTCAATGAC 1187
||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||
Sbjct 1102 TCTAAAATGGGTTTATTCAAATCAACCACCTT-TGCCAGCTCTGTTTCTCCTTCAATGAC 1160
Query 1188 AACACAGCTGGACTCTAGCACGATGGTTAATATGCCTGCCCCATCTGAGACCATTCCCAA 1247
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1161 AACACAGCTGGACTCTAGCACGATGGTTAATTTACCTGCCCCATCTGAGACCATTCCCAA 1220
Query 1248 GATTGCTAATGTTACGGTGACACCCAAAATGCCTTCTGTTGGTCAGAAGAAACCTCTTGA 1307
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GATTGCTGATGTTACGGTGACACCCAAAATGCCTTCTGTTGGTCAGAAGAAACCTCTTGA 1280
Query 1308 GGCACTAGGTTCTTCGCTGCCACCATCAAGAAAGAAGCAAAAAATATGTGGGACTTCTTC 1367
||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||
Sbjct 1281 GGCACTAGGTTCTTCGCTGCCACCATCAAGAAAGAGGCAAAAACTATGTGAGACTTCTTC 1340
Query 1368 AGATGAAAGTATTGAAAAGTTTAATGATGTCACTGCAGTCAGTGGCATCAATCTCAGGGA 1427
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1341 AGATGAAAGTATTGAAAAGTTTAATGATGTCACTGCAGTCAGTGGCATTAATCTCAGGGA 1400
Query 1428 AGAGGAAAAACAATTATTAGATTCTGGTCCTAAAAAGAACGATCGTGTTTCTAAAGCATA 1487
||||||||||| |||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 1401 AGAGGAAAAACGATTATTAGGTTCTGGTCCTAAAAAGAACGGTGGTGTTTCTAAAGCATG 1460
Query 1488 TCGAAGACTTGTGCATGGAGAGGAAGAAAGAACGCTTTTGCAGAAAATTCCACTGCAGAG 1547
||||||| ||||||||| |||||| ||||||||| ||||||||||||||| |||| ||||
Sbjct 1461 TCGAAGAATTGTGCATGAAGAGGAGGAAAGAACGATTTTGCAGAAAATTCTACTGAAGAG 1520
Query 1548 AAAGCTGACAGAAATTATGGGAAAAAGTGGTTTAAAGCATATAGACCATGATGTAGAGCG 1607
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 1521 AAAGCTGACAGAAATTATGGCAACAAGTGATTTAAAGCATATAGACCATGATGTAGAGCG 1580
Query 1608 GTGCTTGTCTCTGTGTGTGGAGGAGAGGATGCGAGGACTACTGTTTAATATAATACGAAT 1667
||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1581 GTGCTTGTCTCTGTGCGTAGAGGAGAGGATGCGAGGACTATTGTCTAATATAATACGAAT 1640
Query 1668 ATCAAAGCAGCGGACTGATGCAGAGAAGTGTAGAAATCGGACTTTTATCACATCTGATAT 1727
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1641 ATCAAAGCAGCGGACTGATGCCGAGAAGTGTAGAAATCGGACTTTTATCACGTCTGATAT 1700
Query 1728 CCGGAAAGAAATTAATGAAATGAATCagaaggtgaaagaggaatgggaaaagaaacattc 1787
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1701 CCGGAGAGAAATTAATGAAATGAATCAGAAGGTGAAAGAGGAATGGGAAAAGAAACATGC 1760
Query 1788 tggagaagaaaagaacaaagaaaatgatactgaaaaagaagaCCAACGTTCAAACGAAGT 1847
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1761 TGGAGAAGATAAGAACGAAGAAAATGATACTGAAAAAGAAGACCAACGTTCAAAAGAAGT 1820
Query 1848 GAAGGCAAATAAGAAGGACGAAGATAAAGAGAGAGCCAAGGCTGCAAATGTTGCTGTTCG 1907
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1821 GAAGGCAAATAAGAAGGACGAAGATAAAAAGAGAGCTAAGGCTGCAAATGTTGCTGTTCA 1880
Query 1908 TGCAGCCGTTGGAGGAGATGATAGGTTTTCAAAATGGAAACTTATGGCTGAAGCACGTCA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 TGCAGCCGTTGGAGGAGATGATAGGTTTTCAAAATGGAAACTTATGGCTGAAGCACGTCA 1940
Query 1968 GAGATCTTCTCCAGGGCCAGGAAGAAACTCCAAGAAACTTTCTGGTG-----G-T---AC 2018
||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1941 GAGATCTTCTCCAGGGCCAGGAAGAAACTCCAAGAAACTTTCTGGTGAAATTGGTGGTAC 2000
Query 2019 ACAATTTGGGAAGAACCAAGGTTTACCAAAAGTAGTCCGGTCAATCTCTGTGAAGGATGT 2078
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 2001 ACAATTTGGGAAGAACCAAGGTTTACCAAAACTAGTCCGGTCAATTTCTGTGAAGGATGT 2060
Query 2079 GATCGCTGTGGTGGAAAAGGAGCCTCAGATGTCAAGATCGACGCTATTGTATCGCGTATA 2138
||| ||||||||||||| ||||||||||||||||||||| |||||||||||| || ||||
Sbjct 2061 GATTGCTGTGGTGGAAATGGAGCCTCAGATGTCAAGATCAACGCTATTGTATTGCTTATA 2120
Query 2139 CAATAGAATCTGCTCGGATGTTTGA 2163
||||||||||||||||| |||||||
Sbjct 2121 CAATAGAATCTGCTCGGCTGTTTGA 2145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5