BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27740.1
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472979 jgi|Araly1|472979|fgenesh2_kg.1__2933__AT1G27740.1 1661 0.0
> Ahg472979 jgi|Araly1|472979|fgenesh2_kg.1__2933__AT1G27740.1
Length=1068
Score = 1661 bits (899), Expect = 0.0
Identities = 1020/1076 (95%), Gaps = 18/1076 (2%)
Strand=Plus/Plus
Query 57 GTTAGAGCGATGGACGTTTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAAC 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTAGAGCGATGGACGTTTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAAC 60
Query 117 TTTGATCAATGTTCATCATCTAAAGAGGAGAGACCGCGAGACGAGTTGCTTGGCCTCTCT 176
||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 61 TTTGATCAATGTTCATCATCTAAGGAGGATAGACCGCGAGACGAGATGCTTGGCCTCTCT 120
Query 177 AGCCTTTACAATGGTCATCTTCATCAACATCAACACCATAACAATGTCTTATCTTCTGAT 236
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCCTCTACAATGGTCATATTCATCAACATCAACACCATAACAATGTCTTATCTTCTGAT 180
Query 237 CATCATGCTTTCTTGCTCCCTGATATGTTCCCATTTGGTGCAATGCCGGGAGGAAATCTT 296
||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CATCATGCTCTCTTGCTTCCTGACATGTTCCCATTTGGTGCAATGCCGGGAGGAAATCTT 240
Query 297 CCGGCCATGCTTGATTCTTGGGATCAA-AGTCATCACCTCCAAGAAACGTCTTCTCTTAA 355
||||| ||||||||||||||||||||| | ||||||||||||||||||| | ||||||||
Sbjct 241 CCGGCTATGCTTGATTCTTGGGATCAATA-TCATCACCTCCAAGAAACGCCCTCTCTTAA 299
Query 356 GAGGAAACTACTTGACGTGGAGAATCTATGCAAAACTAACTCTAACTGTGACGTCACAAG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGGAAACTACTTGACGTGGAGAATCTATGCAAAACTAACTCTAACTGTGACGTCACAAG 359
Query 416 ACAAGAGCTTGCGAAATCCAAGAAAAAACAGAGGGTAAGCTCGGAAAGCAATACAGTTGA 475
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 ACAAGAGCTTGCGAAATCCAAGAAAAAACAGAGGGTAAGCCCGGAAAGCAATACAGTTGA 419
Query 476 CGAGAGCAACACTAATTGGGTAGATGGTCAGAGTTTAAGCAACAGTTCAGATGATGAGAA 535
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGAAAGCAACACTAATTGGATAGATGGTCAGAGTTTAAGCAACAGTTCAGATGATGAGAA 479
Query 536 AGCTTCGGTCACAAGTGTTAAAGGCAAAACTAGAGCCACCAAAGGGACAGCCACTGATCC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCTTCGGTCACAAGTGTTAAAGGCAAAACTAGAGCCACCAAAGGGACAGCCACTGATCC 539
Query 596 TCAAAGCCTTTATGCTCGGAAACGAAGAGAGAAGATTAACGAAAGGCTCAAGACACTACA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 TCAAAGCCTTTATGCTCGGAAACGAAGAGAGAAGATTAACGAAAGGCTCAAGACACTGCA 599
Query 656 AAACCTTGTGCCAAACGGGACAAAAGTCGATATAAGCACGATGCTTGAAGAAGCGGTCCA 715
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 AAACCTTGTGCCAAACGGGACAAAAGTTGATATAAGCACGATGCTTGAAGAAGCGGTCCA 659
Query 716 TTACGTGAAGTTCTTGCAGCTTCAGATTAAGTTGTTGAGCTCGGATGATCTATGGATGTA 775
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 TTACGTCAAGTTCTTGCAGCTTCAGATTAAGTTGTTAAGCTCGGATGATCTATGGATGTA 719
Query 776 CGCACCATTGGCTTACAACGGCCTGGACATGGGGTTCCATCACAACCTTTTGTCTCGGCT 835
|||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||
Sbjct 720 CGCACCATTGGCTTACAATGGACTCGACATGGGGTTCCATCACAACCTTTTATCTCGGCT 779
Query 836 TATGTGAAGGACTTACAAGTTACAAT--GTCAATGTAAAGAAACCCA-TTTAGAACATAT 892
|||||||||||||||||||||| ||| |||| |||||||||||| | ||||||||||||
Sbjct 780 TATGTGAAGGACTTACAAGTTAAAATATGTCATTGTAAAGAAACCGAATTTAGAACATAT 839
Query 893 ATATCCCTATTTGAGCCAAACTAAAGAGATCTACGCTAAGATCCTACCATTTTCTT--CT 950
|||||| |||||| ||||| || ||||||||||| |||||||| ||||||||| || ||
Sbjct 840 ATATCCATATTTGGGCCAA-CTGAAGAGATCTACCCTAAGATCTTACCATTTTTTTTTCT 898
Query 951 TGTTGTTCATTCTGATATTTTTATTATTCTTAAct----tcttttgtctctttcgtcatt 1006
|||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||
Sbjct 899 TGTTGTTCATTCTGATATTTTTCTTATTCTTAATTAACATCTTTTGTCTCTTTCCTCATT 958
Query 1007 atggttctaagaacttttggtactctttttcttttcttttttGTAATTATATTTTTAAAT 1066
|||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 959 ATGGTTCTAAGAACTTTTGGTACTCTCTCTCT---CTTTTTTGTAATAATATTTTTAAAT 1015
Query 1067 TATGAAAAAGTCAACTCAGACTAATTAAATAACAATCGTCTTTCCTTTTGCAATTT 1122
|||||||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 1016 TATGAAAAAGTCAACTAAGACTAATTAAATAACA-T--TCTTTCCTTTTGCAATTT 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41935208700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5