BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27750.1
Length=3476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912607 jgi|Araly1|912607|Al_scaffold_0001_2861 3681 0.0
Ahg932978 jgi|Araly1|932978|scaffold_400966.1 451 1e-125
Ahg932460 jgi|Araly1|932460|scaffold_400448.1 364 2e-99
Ahg343965 jgi|Araly1|343965|fgenesh1_pg.C_scaffold_4000307 324 3e-87
Ahg931233 jgi|Araly1|931233|scaffold_303690.1 318 1e-85
Ahg347303 jgi|Araly1|347303|fgenesh1_pg.C_scaffold_5000695 318 1e-85
Ahg338589 jgi|Araly1|338589|fgenesh1_pg.C_scaffold_2000688 307 3e-82
Ahg932977 jgi|Araly1|932977|scaffold_400965.1 148 2e-34
> Ahg912607 jgi|Araly1|912607|Al_scaffold_0001_2861
Length=5517
Score = 3681 bits (1993), Expect = 0.0
Identities = 2162/2246 (96%), Gaps = 2/2246 (0%)
Strand=Plus/Plus
Query 41 ATGGCTTGCGCCGAGCAGCCTATCAAAAAGCGTCGTCTGTATGAGTCAATCCCTGAATCT 100
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCTTGCGCCGAGCAGCCCATCAAAAAGCGTCGGCTGTATGAGTCAATCCCTGAATCT 60
Query 101 CACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTAAGCTCGTTC 160
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGCCTCCGCCACCACCGCAACCAGAATCCCAATCCCCTTCTACGGTGGTAAGCTCGTTC 120
Query 161 CCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGAAGTAGGAAC 220
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CCGGCTCCGGTGACTCCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGAAGCAGGAAC 180
Query 221 AGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGTGTTGCTCAG 280
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 181 AGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGTATTGGTCAG 240
Query 281 AGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCT 340
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGATGGCGGCGGCCGCTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCT 300
Query 341 TCCAGAGGTTGTACTAGCGTTAAGCGCCTTGTGGCTGATCTCGTTCCTCGATATGCATTG 400
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TCCAGAGGTTGTACTAGCGTAAAGCGCCTTGTGGCTGATCTCGTTCCTCGATATGCACTG 360
Query 401 TACTGTCCTACGGCTATTGGAGATGCAGTGCAAGCTGTTATTGACATGCATAACTTCAGC 460
||||||||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 TACTGTCCTACTGCTATCGCAGATGCAGTGCAAGCTGTTATCGACATGCATAACTTCAGC 420
Query 461 TTGGAAGCTTTAAAGAGAGGACAAGATGCTGATGGTGTTGCTTTTCAAACTGCTAAAGCC 520
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTAGAAGCTTTAAAGAGAGGACAAGATGCTGATGGTGTTGCTTTTCAAACTGCTAAAGCC 480
Query 521 TGCATATTTGGTCTAGTTGACCTATGTTCTGCTGCTTTATCGAAGAAAACGTCATCACCA 580
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 481 TGCATATTTGGTCTAGTTGATCTATGTTCTGCTGCTTTATCAAAGAAAACTTCATCACCC 540
Query 581 GGGGCTCGAGATATCTGCTCTGCCGTGTTCAGAAATGTGTTAACCTTCTTTGTGCTTTCT 640
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 541 GGGGCTCGTGAAATCTGCTCTGCTGTGTTCAGAAATGTGTTAACCTTCTTTGTGCTGTCC 600
Query 641 TTTGAGGGGAAAAATATCTTCCAGATAGTTGATAAGAGCGATTTGAAGTTGCAAGATCCT 700
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 TTTGAGGGGAAAGATATCTTCCAGATAGTTGATAAGAGCGATTTGAAGGTGCAAGATCCT 660
Query 701 GACGAAATTTTTTCTCAGCTGATGCAAAAACTTTCAGATGGAAACTCGTTACCTTTGATC 760
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 GATGAATTTTTTTCTCAGCTGATGCAAAAAATTTCAGATGGAAACTCGTTACCTTTGATC 720
Query 761 AAATTATCCCAGTTTCGTGTTTTAGCTTTACTGAAAGTATTCTTCAACTTCCCTAAAAAA 820
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 721 AAACTATCCCAGTTTCGTGTTTTAGCTTTAATGAAAGTATTCTTCAACTTCCCTAAAAAA 780
Query 821 TCAATTGCCACTTGTTTCGGATTCTTCAATTCTTCATCCACGGAGGATGTAGCAACGGGG 880
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 781 TCAATTGCCACTTGTTTCGGATTCTTCAATTCTTCATCAACGGAGGATGTAGCCACGGGG 840
Query 881 AGGTATCTCATTACTCATATGACAGAAAAGATTAATGATATTGATGCCGCTAGTATTGAA 940
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 841 AGGTATCTCATTACTCAGATGACAGAAAAGATTAATGATATTGATGCTGCTAGTAATGAA 900
Query 941 CCTGAAGTAGACGAGAATTCTGGTCAGACAGGTTCTAACAATATAGAGGCTACTGGTAAG 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCTGAAGTAGACGAGAATTCTGGTCAGACAGGTTCTAACAATATAGAGGCTACTGGTAAG 960
Query 1001 AATGCAGAAGGGTTGAATGGTGTACAAGAAGCATCAAACAGTCTAACGAGCTGCTTGTTA 1060
|| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||
Sbjct 961 AACGCAGAAGGGTTGAATGGGGTCCAAGAAGCATCCAACAGTCTAACGAGCTGCTTATTA 1020
Query 1061 GAAATGGTTATTAGGAAGAGTTCCTCCATTGGTAGGTGGGCCTTCTTTCAGTATAAGAAA 1120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAATGGTTATTAGGAAGAGTTCCTCCATTGGTAGGTGGGCCTTCTTTCAGTATAAGAAC 1080
Query 1121 ATATGCAGCCTGTCATCCTTCGTGGATATATCCAGTGCTGTTAC-TTCTCTAGAGGGAAT 1179
||||||||||||||||||||||||||||||||||||||| || | |||| ||||||||||
Sbjct 1081 ATATGCAGCCTGTCATCCTTCGTGGATATATCCAGTGCTATT-CTTTCTGTAGAGGGAAT 1139
Query 1180 CTTTGGATTTGTTGGAAAAAATATCAAGTTAGAAGATTGTCAAATGGACAGTGACGAGGA 1239
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1140 CTTTGGATTTGTTGGAAAAGATATCAAGTTAGAAGATTGCCAAATGGAGAGTGACGAGGA 1199
Query 1240 TGATTATGGAAAATTTTCAGTTTCACATGTGAAACCTCACAGTTCTGCAGACAATGATGT 1299
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1200 TGATTATGGAAAATTTTCGGTTTCACATGTGAAACCCCACAGTTCTGCAGACAATGATGT 1259
Query 1300 CCGCTCTAGTGCTGGATCGGTTTATGATGCTGGAGGTTCACGATCTATGGATTTTGAGAC 1359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCGCTCAAGTGCTGGATCGGTTTATGATGCTGGAGGTTCACGATCTATGGATTTTGAGAC 1319
Query 1360 TGTTGACCAGAGAGACTTGTCATGTGGTAGATCTTCAGTCCCAAGGGGATTATTAAACCA 1419
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1320 TGTTGACCAGAGGGACTTGTCATGTGGTAGATCTTCAGTCCCAAGGGGATTAATAAACCA 1379
Query 1420 GCATACACCATCTCCTTCTGCAAGAGGGCCTTCAGATTTAAGAAGTAACTCTACGGATCG 1479
|||||||||||||||||||| || |||||||| ||| |||| ||||||||| |||||
Sbjct 1380 TCATACACCATCTCCTTCTGCTAGGGGGCCTTCTGATGTAAGGAGTAACTCTGTGGATCA 1439
Query 1480 TAGGAACAATTTTGTTCTTGCAGGATCACCTGTTTATCAGGCAGTACCCCATGGCCCTTC 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TAGGAACAATTTTGTTCTTGCAGGATCACCTGTTTATCAGGCAGTACCCCATGGCCCTTC 1499
Query 1540 ATCAGGGCAAATTGCTTGGTATTTGGATGGGGACCCCACTGCTTTTGACATTTTTCCGGC 1599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATCAGGGCAAATTGTTTGGTATTTGGATGGGGACCCCACTGCTTTTGACATTTTTCCGGC 1559
Query 1600 TTCGGGGCAGTTGTGGTTAGGCTATTTAGGACCAGATGAAACAGAAGGTCATCTAAGGTT 1659
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1560 TTCGGGGCAGTTGTGGTTAGGCTATTTAGGACCAGATGAGACTGAAGGTCATCTAAGGTT 1619
Query 1660 TCAGCTTGACAGGTACGGCCCTGTAGACCGTTTCTTTTTTGATCCAGTGAAAGGATTTGC 1719
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCAGCTTGATAGGTACGGCCCAGTAGACCGTTTCTTTTTTGATCCAGTGAAAGGATTTGC 1679
Query 1720 TCTAGCAGAATATAGAAGCATAATTGATGCAATCAGAGCTCGAGAATATCTGCGAGCGCA 1779
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CCTAGCAGAATATAGAAGTATAATTGATGCAATCAGAGCTCGAGAATATCTGCGAGCGCA 1739
Query 1780 ATTTCCTTGGCGCATTAAATTTATGGATATAGGAGTGGGTGCAAGGGGATCTTTGAATGG 1839
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1740 ATTTCCTTGGCGCATTAAATTCATGGATATAGGAGTTGGTGCAAGGGGATCTTTGAATGG 1799
Query 1840 AGTAGCATATGGTTATTGTACTCATCTGTATATTGGAGGCATCAGTAGCCAGTGGGAGAG 1899
||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1800 AGTGGCATATGGTTATTGTACTCATTTGTATATTGGAAGCATCAGTAGCCAGTGGGAGAG 1859
Query 1900 GGATGAAATTGTCCATGAGTCGCGGCAAGCCCTTTATAAGGGGCCTCGCATGGTGACTGA 1959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 GGATGAAATTGTCCATGAGTCGCGGCAAGCCCTTTATAAGGGGCCTCGCATGGTGACTGA 1919
Query 1960 CCTGTACTATGAACATGCCCTTCTGATGGAGTTTGATACACCTGATGATGCTGCAATTGT 2019
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1920 CCTGTACTATGAACATGCCCTTCTGATGGAGTTTGATTCACCTGATGATGCTGCCATTGT 1979
Query 2020 AATGGCCCATCTCAGGTTTTTTCGGGGAGAAAAGAGTAAATTTCATTTGGCATCAATCAA 2079
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1980 AATGGCCCATCTCAGGTTTTTTCGCGGAGAAAAGAGTAAATTTCATTTGGCATCAATCAA 2039
Query 2080 TCGTCCTTTGCCTCATGAAGATGGAGGAAGTCATCCAGAGAGGCACCTTCAAGTACCTCC 2139
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TCATCCTTTGCCTCATGAAGATGGAGGAAGTCATCCAGAGAGGCACCTTCAAGTACCTCC 2099
Query 2140 CTCATCAAAACAGGATAGTGGTTCAGGAGAATATGTTTCCCCCTTAATGAGTACGGATAA 2199
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2100 CTCATCAAAACAGGATAGTGGATCAGGAGAATATGTTTCCCCCTTAATGAGTACGGATAA 2159
Query 2200 CCACTGTAATTCTGTACCTCCTGGAGCTACCTTTCAGCAAAACTGGCCTGCAGCTGGTAG 2259
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2160 CCACTGTAATTCTGTACCTCCTGGAGCTACCTTTCAGCAAAACTGGCCTGCATCTGGTAG 2219
Query 2260 CACTCTTGTGAATTCTGCACAAGGAG 2285
|||||||||||||||||||||| |||
Sbjct 2220 CACTCTTGTGAATTCTGCACAAAGAG 2245
Score = 913 bits (494), Expect = 0.0
Identities = 539/561 (96%), Gaps = 2/561 (0%)
Strand=Plus/Plus
Query 2457 CAACATCATCTCAGATGCAAGGACCTCCAGCGCAACAGGTTTCAGGTCCCTTCATGCCGC 2516
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2366 CAACATCATCACAGATGCAAGGACCTCCAGCGCAGCAGGTTTCAGGTCCATTCATGCCGC 2425
Query 2517 CTCCTGTGCATCCAGTCTCTCAGCCACAAGGACCTCAAGTTCAGCAATTTGATCAATTGT 2576
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2426 CTCCTGTGCATCCAGTCTCTCAGACACAAGGACCTCAAGTTCAGCAATTTGATCAATTGT 2485
Query 2577 ACCCACCTCCGCCTTTAGGACATTCATTACCTTCTGTACTCCAGCCACCACTACAACCTC 2636
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 2486 ACCCACCTCCGCCTTTAGGACATTCATTACCCTCTGTAATCCAGCCACCACTACAACCTC 2545
Query 2637 AATCCCAGCCACCGGAACCACCGCCTGAAATGATGCCGCCTCCGCCTCAAGCTCTACCAC 2696
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2546 AATCCCAGCCACCGGAACCACCGCCTGAAATGATGCCGCCTCCGCCTCAAGCTCCACCAC 2605
Query 2697 CTCCTTTGCCTCACTCACACCCACCTCTGGTTCCTCCTCCTCCTTTTTCTCCACT-GTTG 2755
||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 2606 CTCCTTTGCCTCATTCACACCCACCTCTGGTTCCTCCTCCTCCTTTTTCTCCA-TCATCG 2664
Query 2756 TCCCCACGCTTACCTCCAATGGTCACCCAGTTGTGTGGATCAGAGGCTTCCAAACAGAAC 2815
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2665 TCCCCACGCTTACCTCCAATGGTCACCCAGTTGTGTGGACCAGAGGCTTCCAAACAGAAC 2724
Query 2816 ATAGGGCACCAATGGCAGGGTGCTTTGTCCAAAAGTGGAGTTCATTACTCCACCATCATT 2875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2725 ATAGGGCACCAATGGCAGGGTGCTTTGTCCAAAAGTGGAGTTCATTACTCCACCATCATT 2784
Query 2876 GCACAGAGATTGGAATCAGACATTTGCAAATATATCATTGGATCTCCCGAGCCTGTGCAA 2935
| |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2785 GTACAGAGTTTGGAATCAGACATTTGCAAATATATCATTGGATCTTCAGAGCCTGTGCAA 2844
Query 2936 TGGCCAGTTAAACTGGATATGACTAAGCGCACGGATATGAAGAACGTAAAAGCTACTTTT 2995
|||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 2845 TGGCCAGTTAAATTGGATATGACCAAGCGCACGGATATGAAGCACGTGAAAGCTACTTTT 2904
Query 2996 GCGAATACACAACCACACAAA 3016
||||||||||||||||| |||
Sbjct 2905 GCGAATACACAACCACAGAAA 2925
Score = 263 bits (142), Expect = 7e-69
Identities = 156/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 3065 CTCCAAGATTTCATAACATACTTGAAGCAGAGAGATTGTGCAGGAGTAATAAAGATCCCT 3124
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 2926 CTCCAAGATTTCATAACATACTTGAAGCAGAGAGACTGCGCAGGAGTAATAAAGATCCCT 2985
Query 3125 GCATCAAGTCCCATGTGGGCAAGGCATCTCTTCATTCTTCCACACTCGCAAGAGACATGT 3184
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2986 GCATCAAGTCCCATGTGGGCAAGGCATCTCTTCATTCTTCCGCATTCGCAAGAGACATGT 3045
Query 3185 TCCTTGCTTTCTGTTTCCCCATCTTCCTCGGAATGCTTGATCG 3227
||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 3046 TCCTTGCTTTCGGTTTCCCCGTCTTCCTCTGAATGCTTGATCG 3088
Score = 156 bits (84), Expect = 1e-36
Identities = 88/90 (98%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 2284 AGTCTCAGGAACTCCTCCATGTGTGCCCATACCAGCTCCGGGCCAGCCTGCAGTGCCTGC 2343
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2276 AGTCTCAGGAACTCCTCCATGTGTGCCCATACCAGCTCCAGGACAGCCTGCAGTGCCTGC 2335
Query 2344 TACACCGACATCTCAAATCCCTCCATCTCC 2373
||||||||||||||||||||||||||||||
Sbjct 2336 TACACCGACATCTCAAATCCCTCCATCTCC 2365
> Ahg932978 jgi|Araly1|932978|scaffold_400966.1
Length=593
Score = 451 bits (244), Expect = 1e-125
Identities = 368/424 (87%), Gaps = 23/424 (5%)
Strand=Plus/Plus
Query 210 GAAGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTT 269
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1 GAAGCAGGAACAGAGATGAGATGCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTT 60
Query 270 GTGTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAAGCGTATCGCTCCC 329
| ||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||
Sbjct 61 CTATTGGTCAGAGAGATGGTGGTGGATGCTCTGCGAATCTTGAGCAAGCGTATCGTTCCC 120
Query 330 TCATCTCCGCTTCC--AG--AG--G--------T------TGTACTAGCGTTAAGC-GCC 368
|||| ||||||||| || || | | |||||||||||||||| |||
Sbjct 121 TCATATCCGCTTCCAGAGTTAGTTGCTTATACTTGCAGGCTGTACTAGCGTTAAGCGGCC 180
Query 369 TTGTGGCTGATCTCGTTCCTCGATATGCATTGTACTGTCCTACGGCTATTGGAGATGCAG 428
|||||||||||||| ||| ||| |||||| | ||||| ||||| ||| | |||||||||
Sbjct 181 TTGTGGCTGATCTCATTCTTCGGTATGCACTATACTGCCCTACTGCTGTCGGAGATGCAT 240
Query 429 TGCAAGCTGTTATTGACATGCATAACTTCAGCTTGGAAGCTTTAAAGAGAGGACAAGATG 488
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGCAAGCTGTTATCGACATGCATAACTTCAGCGTGGAAGCTTTAAAGAGAGGACAAGATA 300
Query 489 CTGATGGTGTTGCTTTTCAAACTGCTAAAGCCTGCATATTTGGTCTAGTTGACCTATGTT 548
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTGATGGTGTTGCTTTTCAAACTGCTAAAGCCTGCATATTTGGTCTGGTTGACCTATGTT 360
Query 549 CTGCTGCTTTAT-CGAAGAAAACGTCATCACCAGGGGCTCGAGATATCTGCTCTGCCGTG 607
||||||||| || | |||| ||| ||||||||||||| ||| |||||| ||||||| |||
Sbjct 361 CTGCTGCTT-ATTCAAAGACAACATCATCACCAGGGGGTCGTGATATCCGCTCTGCTGTG 419
Query 608 TTCA 611
||||
Sbjct 420 TTCA 423
> Ahg932460 jgi|Araly1|932460|scaffold_400448.1
Length=461
Score = 364 bits (197), Expect = 2e-99
Identities = 239/259 (92%), Gaps = 3/259 (1%)
Strand=Plus/Plus
Query 92 CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA 151
||||||||||| |||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 129 CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTATGGTGGTT 185
Query 152 AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA 211
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 186 AGCTCGTTCCCAGCTCCGGTGACGCCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA 245
Query 212 AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT 271
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 246 AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT 305
Query 272 GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTC 331
||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 306 ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAAGCGTATCGTTCCCTC 365
Query 332 ATCTCCGCTTCCAGAGGTT 350
|| ||||||||||||||||
Sbjct 366 ATATCCGCTTCCAGAGGTT 384
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 102
> Ahg343965 jgi|Araly1|343965|fgenesh1_pg.C_scaffold_4000307
Length=627
Score = 324 bits (175), Expect = 3e-87
Identities = 209/225 (93%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 92 CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA 151
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 109 CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT 165
Query 152 AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA 211
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 166 AGCTCGTTCCCAGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA 225
Query 212 AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT 271
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 226 AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT 285
Query 272 GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA 316
||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 286 ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA 330
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 82
> Ahg931233 jgi|Araly1|931233|scaffold_303690.1
Length=1135
Score = 318 bits (172), Expect = 1e-85
Identities = 208/225 (92%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 92 CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA 151
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 129 CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT 185
Query 152 AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA 211
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 186 AGCTCGTTCCCAGCTCCGGTGACGCCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA 245
Query 212 AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT 271
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 246 AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT 305
Query 272 GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA 316
||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 306 ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA 350
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 102
> Ahg347303 jgi|Araly1|347303|fgenesh1_pg.C_scaffold_5000695
Length=627
Score = 318 bits (172), Expect = 1e-85
Identities = 208/225 (92%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 92 CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA 151
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 109 CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT 165
Query 152 AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA 211
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 166 AGCTCGTTCCCAGCTCCGGTGACGCCGTCGCCTCCATCTCAGGAGGAAATTCAAACCAGA 225
Query 212 AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT 271
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 226 AGCAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT 285
Query 272 GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA 316
||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 286 ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA 330
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 82
> Ahg338589 jgi|Araly1|338589|fgenesh1_pg.C_scaffold_2000688
Length=648
Score = 307 bits (166), Expect = 3e-82
Identities = 206/225 (92%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 92 CCTGAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTA 151
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 109 CCTGAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTT 165
Query 152 AGCTCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTCAAACGAGA 211
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 166 AGCTCGTTCCTAGCTCCGGTGACGCCATCGCCTCCATCTCAGGAGGAAATTCAAACCAGA 225
Query 212 AGTAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTTAAATCTTGT 271
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 226 AGAAGGAACAGAGAAGAGATTCGAAGAGTGCATGACTGCTATAAGCGTCTCAAATCTTCT 285
Query 272 GTTGCTCAGAGAGATGGTGGCGGCCGCTCTGCGAATCTTGAGCAA 316
||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 286 ATTGGTCAGAGAGATGGTGGTGGGTGCTCTGCGAATCTTGAGCAA 330
Score = 99.0 bits (53), Expect = 2e-19
Identities = 53/53 (100%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 30 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 82
> Ahg932977 jgi|Araly1|932977|scaffold_400965.1
Length=237
Score = 148 bits (80), Expect = 2e-34
Identities = 100/109 (92%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 95 GAATCTCACCCTCCGCCACCACCGCAACTAGAATCCCAATCCCCTTCTACGGTGGTAAGC 154
|||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 132 GAATCTCAGCCTCCG---CCACCGCAATTAGAATCCCAATCCCCTTCTACGGTGGTTAGC 188
Query 155 TCGTTCCCGGCTCCGGTGACACCGTCGCCTCCATCTCAGGAGGAAATTC 203
|||||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 189 TCGTTCCCAGCTCCGGTGACGCCGTAGCCTCCATCTCAGGAGGAAATTC 237
Score = 93.5 bits (50), Expect = 1e-17
Identities = 52/53 (98%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 298 CTCTGCGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 350
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 CTCTACGAATCTTGAGCAAGCGTATCGCTCCCTCATCTCCGCTTCCAGAGGTT 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131260569277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5