BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27820.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921835 jgi|Araly1|921835|scaffold_103116.1 713 0.0
> Ahg921835 jgi|Araly1|921835|scaffold_103116.1
Length=1010
Score = 713 bits (386), Expect = 0.0
Identities = 632/750 (84%), Gaps = 19/750 (3%)
Strand=Plus/Plus
Query 1 ATGAAGCAAATTAGTAGCGGTGAAGTTTGGAGATGGAACAAGGAAGTAGAGATGAATTCG 60
|||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 22 ATGAAGCAAAGTAGTAGTTGTGAAGTTTGGAGATGGAACAAGGAAGCAGAGATGAATGCG 81
Query 61 ATAAGAGATTGTTTGAAACATTGTAGTTCCATCGCTATCGACACAGAGTTTCCCGGATGC 120
|| || |||||||||||||||||||||| ||||||||| || ||||||||||| |||||
Sbjct 82 ATGAGCGATTGTTTGAAACATTGTAGTTTCATCGCTATAGATACAGAGTTTCCGGGATGT 141
Query 121 TTAAAGGAGACTCCGATGGACGCGAGTGAGGAAATTCGTTACAGAGACATGAAGTTCAAT 180
||||| |||||||| ||||| || |||||||||| |||||||||| ||||||||| ||||
Sbjct 142 TTAAAAGAGACTCCCATGGAAGCTAGTGAGGAAACTCGTTACAGAAACATGAAGTACAAT 201
Query 181 GTGGACAACACCCATCTCATCCAGTTAGGTTTCACGCTATTCGACAGAAGAGGATTCGCT 240
|| || |||||| ||||||| ||||||||||| || |||||| | | ||| ||| ||
Sbjct 202 GTCGAAAACACCAATCTCATTCAGTTAGGTTTGACAATATTCG-CTG--GAGAATTTTCT 258
Query 241 AAAACCTGGGAAATAAACTTGTCAGATTTCGACGAACATAAGTG-CTTCAAAAACGATAA 299
||||| |||||||| ||||| ||||||||| |||| ||| | ||| || || || ||
Sbjct 259 AAAACTTGGGAAATTAACTTCTCAGATTTCAACGAGTGGAAG-GACTTGAAGAATGAGAA 317
Query 300 GTCCATTGCGTTTCTGAAAAGCAATGGTCTCAATCTGGACAAGATCAGAGAGGAAGGTAT 359
|| || |||||||||||||| |||||||| ||||||| ||||||||||||||||| ||
Sbjct 318 ATCTATCGCGTTTCTGAAAAGTAATGGTCTGGATCTGGAGAAGATCAGAGAGGAAGGAAT 377
Query 360 TGGAATCGATGAATTCTT-TAGAGACTTTTCTC--A-GATTCTCACGGAGAAGGACGGA- 414
||||||||| |||||||| || || ||| ||| | |||||||| ||||||||| | |
Sbjct 378 TGGAATCGAAGAATTCTTCAAG-GAGTTTACTCAGATGATTCTCAAGGAGAAGGA-GAAG 435
Query 415 AAGATAACTTGGGTGAATTTTCAAGGCTCTTACGACAATGCTTATCTCGTTAAAGGCTTA 474
||||| |||||||||| |||||||||||| |||||||| |||||||| || |||||||||
Sbjct 436 AAGATGACTTGGGTGACTTTTCAAGGCTCCTACGACAAGGCTTATCTAGTGAAAGGCTTA 495
Query 475 ACGGGAGGGAAACCGTTACCGGAGACTAAGGAAGAGTTTCACGAGACCGTCCAGCA-GCT 533
|| ||||| ||||| || ||||||||| |||||||||| |||| || || || | |||
Sbjct 496 ACCGGAGGAAAACCATTGCCGGAGACTTTGGAAGAGTTTGACGAAACGGTTGAG-AGGCT 554
Query 534 TTTGGGA-AAGTTTGTTTTTGACGTAAAGAAAATCGCTGAATCATGCAGCGGACTAAGTA 592
||||||| || ||||| ||| || |||||||| |||| || |||||| ||||||||||
Sbjct 555 TTTGGGAGAA-CGTGTTTATGATGTGAAGAAAATGGCTGGATTATGCAGAGGACTAAGTA 613
Query 593 GCCAATTCGGACTACAGAGAATAGCTGATGTGTTGCAGATGAAACGTGTTGGAAAAGCTC 652
||| |||||||| ||||||||||| |||| ||| ||||||| |||||||||| ||||
Sbjct 614 GCCGTTTCGGACTGCAGAGAATAGCAGATGCGTTTCAGATGAGGCGTGTTGGAATGGCTC 673
Query 653 ATCACGCTGGCTCAGACAGTGAATTGACGGCTCGTGTCTTCACTAAGTTGACTTTCGATT 712
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 674 ATCACGCTGGCTCAGACAGTGAATTAACGGCTCGTGTCTTCACCAAGTTGACTTTCTATT 733
Query 713 TGCTTAATAGTAGAAAGCAGAGTGTAAGAC 742
|| | | || ||||| |||||| ||||||
Sbjct 734 TG-TGCA-AG-AGAAACCAGAGTCTAAGAC 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5