BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27840.3
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472988 jgi|Araly1|472988|fgenesh2_kg.1__2942__AT1G19750.1 2198 0.0
> Ahg472988 jgi|Araly1|472988|fgenesh2_kg.1__2942__AT1G19750.1
Length=1354
Score = 2198 bits (1190), Expect = 0.0
Identities = 1303/1358 (96%), Gaps = 5/1358 (0%)
Strand=Plus/Plus
Query 108 ATGTGGGAGGCTATCAAAGACAGAGAAACCGGTCGAATTCGTTCCAATTCCTTCGCCAAT 167
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGAAGGCTATCAAAGACAGAGAAACCGGTCGAATTCGTTCCAATTCCTTCGCCAAT 60
Query 168 CGATTCAAATCCCGCCGGATTTTGTCTCTCCAACTCTCTAATCGAAAAGACTTTGTTTCT 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CGATTCAAATCCCGCCGGATTTTGTCTCTCCAACTCTCTAATCGAAAAGATTTTGTTTCT 120
Query 228 CCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTTCTC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTCATCGTGGCTCCGTTAACTCCCTTCAGGTTGATTTGACGGAGGGGAGATATCTTCTC 180
Query 288 TCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATGTTCAACGGGCCACTGATTACGAG 347
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 181 TCTGGAGCAGCAGATGGTTCAGCTGCTGTATTTGATCTTCAGCGGGCCACTGATTACGAG 240
Query 348 GCAAGTGGTCTAATTGCCAAGCACAAGTGTATATTTACTGTCGACAAGCAACATGAAAAT 407
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GCAAGTGGTCTTATTGCCAAGCACAAGTGTATATTTACTGTCGACAAGCAACATGATAAT 300
Query 408 GGACATAAATATGCCATATCCTCTGCCATTTGGTATCCCATTGACACTGGGCTCTTCATT 467
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 GGACATAAATTTGCCATATCCTCTGCCATATGGTATCCCATTGACACTGGGCTGTTCATT 360
Query 468 ACAGGTTCTTTTGATCATTACTTAAAAGTCTGGGATACCAATACTGCTCAGGCGGTTGTG 527
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 361 ACAGGTTCTTATGATCATTACTTAAAAGTCTGGGATACCAATACTGCCCAGGCAGTTGTG 420
Query 528 GATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCAC 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATTTTAAAATGCCTGGAAAGGTTTATAGAACTGCCATGTCTTCTATGGCAATGTCTCAT 480
Query 588 ACGTTAATTGCTGCTGGAACTGAAGATGTCCAGGTTCGCCTCTGTGATATAGCTTCTGGG 647
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACGTTGATTGCTGCTGGAACTGAAGATGTCCAGGTTCGCCTCTGTGATATAGCTTCTGGG 540
Query 648 GCATTCTCTCACACATTATCGGGTCACCGTGATGGCGTTATGTCAGTGGAATGGTCTACT 707
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 541 GCATTCTCTCACACATTATCGGGTCACCGTGATGGTGTTATGTCAGTTGAATGGTCTACT 600
Query 708 TCCAGCGAGTGGGTTTTGTATACTGGGGGTTGTGATGGTGCAATACGTTTCTGGGACATT 767
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 TCCAGCGAGTGGGTTTTGTATACTGGGGGGTGTGATGGTGCAATACGTTTCTGGGACATC 660
Query 768 AGACGGGCTGGTTGTTTCCGTGTTCTAGATCAATCACAGACACAACTTGGGTTCCGACCA 827
||||| ||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 661 AGACGTGCTGGATGTTTCCGTGTGCTAGATCAATCACAAACACAACTTGGGATCCGACCA 720
Query 828 CCAATTTTAAAGCGAACTGCGGTTGGCAGTAAGCTTTCTTCAGTTGCAAAATCTTCTTTG 887
|||||| |||||||||| |||||| |||||||| ||| ||||| ||||||||||||||||
Sbjct 721 CCAATTCTAAAGCGAACAGCGGTTAGCAGTAAGTTTTATTCAGCTGCAAAATCTTCTTTG 780
Query 888 GGGGGCCAAAATAGGTTGAAGACACTGCAGAGTAAACAAACTGGAAGCCAAAGTGTAAAG 947
|||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||
Sbjct 781 GGGGGCCAAAATAGGTTGAAAACACTGCAAAGTAAACACACTGGCAGCCAAAGTGTAAAG 840
Query 948 GGATCATCTAGCGCTAAAGCTTCAGTGGAAAAGTCTCGACAGAAGAGAATTCACCCTGGA 1007
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 GGATCATCTAGCGCTAAAGCTTCAACGGAAAAGTCTCGACAGAAGAGAATTCACCCTGGA 900
Query 1008 ATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGCTGTTACTGGCTTAAAGGCA 1067
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 901 ATGTTATCTACTCTAGATCGTGCTACGGCTCATTATGGTGTTGTTACTGGCTTAAAGGCA 960
Query 1068 ACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGGATTCAAGAATAAGATTGTGGGAT 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACTAACGATGGGATGTATCTTCTTAGTGCTGGGTCGGATTCAAGAATAAGATTGTGGGAT 1020
Query 1128 ATTGAATCTGGACGCAACACCCTGGTGAACTTTGAAACTGGACGCATCCAGACTAACAAA 1187
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 ATTGAATCTGGACGCAATACCCTGGTGAACTTTGAAACTGGACGCATCCAGACAAACAAA 1080
Query 1188 G-GAATCCAATTAGATACAAGCGATGATCCAGCTCTGGTATTTGTTCCATGCATGAAGAC 1246
| || || ||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 1081 GCGATTC-AATTAGATACAAGCGATGATCCAGCGCTTGTATTTGTTCCGTGCATGAAGAC 1139
Query 1247 TGTGAAGGTAGCTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTA 1306
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGTGAAG--A-CTTTTGGCATGTGGTCGGGTAGAACAACACTGATGCTTCGTGGACACTA 1196
Query 1307 CGAAAGCGTGAACACTTGCTGCTTTAATTCCAATGATCAGGAACTATACACAAGTGGCTC 1366
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 1197 CGAAAGCGTGAACACTTGCTGCTTTAATTCCAGTGATCAGGAACTATATACAAGTGGCGC 1256
Query 1367 AGATAGACAAATACTTGTGTGGTCACCAGGCGGAACAGTGGAAGATGAAATGGTGCAAGA 1426
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| ||
Sbjct 1257 AGATAGACAAATACTTGTGTGGTCACCAGGCGGATCGGTGGAAGACGAAATGGTGCAGGA 1316
Query 1427 TGAAGTAGCCGAAGATAAAGACAATTGGAGCGACTGAG 1464
|||||||||||||||||||||||| |||||||||||||
Sbjct 1317 TGAAGTAGCCGAAGATAAAGACAACTGGAGCGACTGAG 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5