BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27880.1
Length=2940
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472990 jgi|Araly1|472990|fgenesh2_kg.1__2944__AT1G27880.1 3781 0.0
Ahg951958 jgi|Araly1|951958|scaffold_2600009.1 617 1e-175
Ahg890779 jgi|Araly1|890779|Al_scaffold_0007_2765 198 2e-49
> Ahg472990 jgi|Araly1|472990|fgenesh2_kg.1__2944__AT1G27880.1
Length=2859
Score = 3781 bits (2047), Expect = 0.0
Identities = 2332/2466 (95%), Gaps = 34/2466 (1%)
Strand=Plus/Plus
Query 447 AGCCTCCGAATCTCATCACCGATACTATAACTTCTCCTCCGGTGAAACCTATGGTGTTTC 506
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 405 AGCCTCCGAATCTCATCACCGACACTATAACTTCTCCTCCGGTGAAACCTATGGTGTTTC 464
Query 507 GTAGCAACGGTAACGGCGAGGGTAATTTCGTGAAATTGAACTTAAATGGCAAGAGAGGGA 566
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 465 GTAGCAGCGGTAACGGCGAGGGTAATTTCGTGAAGTTGAACTTAAATGGCAAGAGAGGGA 524
Query 567 AGAAGTTTCCCAGCAAATACAAGGGCGTCTCTAAATCTAGAAGCAGTTACTCATTCAGAG 626
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 525 AGAAGTTTCCCAGCAAATACAAGGGCGTCTCTAAATCTAGAAGCAATTACGCATTCAGAG 584
Query 627 GGAAGAGATACAAGAAGAAAGAAGCTGATGGTGATGGCGAATCATTGTTGGAGGAAGAGT 686
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 585 GGAAGAGATACAAGAAGAAAGAAGCTGATGGTGATGGTGAATCATTGTTGGAGGAAGAGT 644
Query 687 CTGATTTACAGAAACAGATAGAAGACGAAGCTAATGGTTTTATTAGCTCTGTAGAGGATG 746
||||||| ||||||||| ||||||| ||||||||||||||||||||||| || |||||||
Sbjct 645 CTGATTTGCAGAAACAGGTAGAAGAAGAAGCTAATGGTTTTATTAGCTCAGTGGAGGATG 704
Query 747 CGATTCTTGCTGTGAAGACTGAGGCTTCTGATGAGAATCTAACGAAGCTGTTGAATTTAG 806
| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 705 CCATTCTTGCTGTGAAGGCTGAGGCTTCTGATGAGCATCTAACGAAGCTGTTGAATTTAG 764
Query 807 TTTATGGTTATGATTCTTTTCGAGACGGACAGTTGCAGGCGATTAAGATGATTCTTGGTG 866
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 765 TTTATGGTTATGATTCTTTTCGAGATGGGCAGTTGCAGGCGATCAAGATGATTCTTGGTG 824
Query 867 GGAGTTCAACGATGCTGGTATTGCCTACTGGTGCTGGTAAGTCTCTCTGCTACCAGATTC 926
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 825 GGAGTTCAACGATGCTGGTATTGCCTACCGGTGCTGGTAAGTCTCTCTGCTACCAGATTC 884
Query 927 CGGCAATGATTCTTCCTGGAATCACGCTTGTAGTGAGTCCTTTGGTTTCGTTGATGATTG 986
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 885 CGGCAATGATTCTTCCGGGAATCACGCTTGTAGTGAGTCCTTTGGTTTCGTTGATGATCG 944
Query 987 ATCAGTTGAAGCATTTGCCTTCTATCATTAAGGGTGGTCTCTTGAGCAGTAGCCAGAGAC 1046
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 945 ATCAGTTGAAGCATTTGCCTTCGATTATTAAGGGTGGTCTCTTGAGCAGTAGCCAGAGAC 1004
Query 1047 CTGAGGAAGCAACGGAGACATTGCGGAAACTTAAAGAAGGCATAATAAAGGTTCTCTTTG 1106
|||||||| |||||||||| ||||||||||| | |||||||||||| |||||||||||||
Sbjct 1005 CTGAGGAAACAACGGAGACGTTGCGGAAACTCAGAGAAGGCATAATTAAGGTTCTCTTTG 1064
Query 1107 TATCTCCTGAGAGACTTCTGAATGTAGAATTTTTGTCAATGTTTCGCATGTCTTTATCTG 1166
||||||| |||||||||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 1065 TATCTCCCGAGAGACTTCTGAATGTAGAATTTCTGTCGATGTTTCGCATGTCTCTATCTG 1124
Query 1167 TGTCACTTGTCGTGGTTGATGAGGCACACTGCGTATCAGAATGGTCTCATAACTTCCGTC 1226
|| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TGCCACTTGTCGTTGTGGATGAGGCACACTGCGTATCAGAATGGTCTCATAACTTCCGTC 1184
Query 1227 CTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAACTCAAGGCAGAATGCATTC 1286
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1185 CTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAACTCAAGGCAAAATGCATTC 1244
Query 1287 TCGCGATGACCGCAACTGCCACTACAATGACTCTTCAGGCTGTCATGTCTTCACTAGAGA 1346
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1245 TCGCGATGACTGCAACTGCCACTACGATGACTCTTCAGGCTGTCATGTCTGCACTAGAGA 1304
Query 1347 TACCGTCAACCAATCTTATTCAGAAGTCACAACTCAGAGACAATTTTGAGTTGTCTGTCT 1406
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1305 TACCGTCAACCAATCTTATTCAGATGTCACAACTTAGAGACAATTTTGAGTTGTCTGTCT 1364
Query 1407 CATTGAGTGGAGCTAATA-G-----AATGAAAGATCTATTGATTTTGATGGAGTCTCCTC 1460
|||||||||||||||| | | |||||||||||||||||||||||||||||||| ||
Sbjct 1365 CATTGAGTGGAGCTAACAGGCAATTAATGAAAGATCTATTGATTTTGATGGAGTCTCATC 1424
Query 1461 CATATAAGGAGATTCGAAGCATCATTGTGTACTGCAAATTTCAGTATGAGACTGACATGA 1520
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1425 CATATAAGGAGATTCGAAGCATCATTGTGTACTGCAAATTTCAATATGAGACTGACATGA 1484
Query 1521 TAAGCAAGTATTTACGCGATAACAACATCAATGCAAAGGGTTATCACAGTGGTCTTCCTG 1580
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TAAGCAAGTATTTACGTGATAACAACATCAATGCAAAGGGTTATCACAGTGGTCTTCCTG 1544
Query 1581 CGAAGGACCGTGTTCGCATACAGGAGTCATTTTGTTCCAACAAGATTAGAGTGGTTGTTG 1640
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1545 CGAAGGACCGTGTTCGCATACAAGAGTCATTTTGTTCCAACAAGATTAGAGTGGTTGTTG 1604
Query 1641 CAACTGTAGCATTCGGCATGGGACTTGACAAGGGAGATGTAGGAGCTGTAATACACTTCA 1700
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1605 CAACTGTGGCATTCGGCATGGGACTTGACAAGGGAGATGTTGGAGCTGTAATTCACTTCA 1664
Query 1701 GCGTGCCAGGCAGTATGGAAGAATACGTTCAGGAAATTGGACGTGCTGGTCGCGACGGGC 1760
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 GCCTGCCAGGCAGTATGGAAGAATACGTTCAGGAAATTGGACGTGCTGGTCGCGACGGGC 1724
Query 1761 GGTTGTCATATTGTCATCTCTTTTATGATAATGACACATATCTAAAGCTTCGGAGTCTTG 1820
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 GGTTGTCTTATTGTCATCTCTTTTATGATAATGACACATATCTAAAGCTTCGGAGTCTTG 1784
Query 1821 CACACAGTGATGGTGTCGATGAATATGCAGTTGGAAAATTTCTCACCCATGTATTTTCCA 1880
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1785 CACACAGTGATGGTGTTGATGAATATGCCGTTGGAAAATTTCTCACCCATGTGTTTTCCA 1844
Query 1881 CTGAGACAAAGCAACACGAGAAGATATGCTCGCTAGTCATTGAATCTGCCTCTCAAAAAT 1940
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1845 CTGAGACAAAGCAACAAGAGATGATATGCTCGCTAGTCATTGAATCTGCCTCTCAAAAAT 1904
Query 1941 TTGACATGAAGGAAGAGGTTATGCAAACGATTTTGACACATTTGGAGCTGGGGGAAGTGC 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TTGACATGAAGGAAGAGGTTATGCAAACGATTTTGACACATTTGGAGCTGGGGGAAGTGC 1964
Query 2001 AATACCTACGTATGCTTCCACAACTCAACATATGTTGCACTTTGAATTTCCACAAGTCTT 2060
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1965 AATACCTACGTATGCTTCCACAACTTAACATATGTTGTACTTTGAATTTCCACAAGTCTT 2024
Query 2061 CTCCAAACACTCTTGCTGCACGAAGTGCCATAGTTGCAGCAATTTTGAAGAAGTCTCACG 2120
||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2025 CTCCAAACACTCTGGCTGCACGAAGTACCATAGTTGCAGCAATTCTGAAGAAGTCTCACG 2084
Query 2121 TGAAGCAAGGGTTACATGTCTTTGATAT-ACCAGCTGTGGCCTCTAGCATATGTGTTGCA 2179
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||
Sbjct 2085 TGAAGCAAGGGTTACATGTCTTCGATATAACC-GCTGTGGCCTCTAGCATATGTGTTGCA 2143
Query 2180 ACAACAGATGTCTTGGCTGAGATTCAAGCTCTGAAGATGAAGGGGGAAGTAACATACGAA 2239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2144 ACAACAGATGTCTTGGCTGAGATTCAAGCTCTGAAGATGAAGTGGGAAGTAACATACGAA 2203
Query 2240 TTGAAGGACTCC-GCCTTTTGTTACACAATCTTAAAATCTCCAAAGGAAATATGTTCATT 2298
||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2204 TTGAAGGAC-CCAGCCTTTTGTTACACAATCTTAAAATCTCCAAGGGAAATATGTTCATT 2262
Query 2299 GTCCAGTCATCTAACCAAGTGGCTCACAGAGATTGAAAGTTGCAAAGTGAGAAAACTGGA 2358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 GTCCAGTCATCTTACCAAGTGGCTCACAGAGATTGAAAGTTGCAAAGTGAGAAAACTGGA 2322
Query 2359 TATTATGTCTAGTGCAGCTGTGGCTGCGATTAGTGTCTCTAACACTTCAGAACTGAGTTC 2418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2323 TATTATGTCTAGTGCAGCTGTGGCTGCGATTAGTGTCTCTAACACTTCAGAACTGAGTTC 2382
Query 2419 TGGTGCCAAGCAAACTCGGAGCCTGCAAAGCAGAATCTTTGATTACTTCAATGGTGATGA 2478
||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 2383 TGGTGCCAAGCAAACTCTGAGCCTGCAAAGTAGAATTTTTGATTACTTCAATGGTGACGA 2442
Query 2479 AAAGTGTGACAGTCCGAGCAAGGCTACTCAAAATTGCGCCTTTCTACGAGCAGACATAAA 2538
||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 2443 AAAGTGTGACACTCCGAGCAAGACGACTCAAAATTGTGCCTTTCTACGAGCAGACATAAA 2502
Query 2539 GGTGTTTTTGCAGAGTAATCGCCAAGCCAAATTCACACCAAGAGCCATCGCGAGAATAAT 2598
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2503 GGTTTTTTTGCAGAGTAATCGCCAAGCCAAATTCACACCAAGAGCCATCGCGAGAATAAT 2562
Query 2599 GCACGGAGTTGGAAGTCCAGCTTTTCCGAATTCAGTCTGGTCCAAGACTCATTTCTGGGG 2658
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2563 GCATGGAGTTGGAAGTCCAGCTTTTCCAAATTCAGTCTGGTCCAAGACTCATTTCTGGGG 2622
Query 2659 AAGGTATATGAACGTAGACTTCCGAGTGATAATGGAAGCGGCACAAACAGAGTTGTTCAA 2718
||||||||||| |||||| ||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 2623 AAGGTATATGAGCGTAGAGTTCCGTGTGATAATGGATGCGGCACAAACAGAGCTGTTCAA 2682
Query 2719 TTTTGTTGACAGGAACGCAGCTTTAGCTACATAACATAAG--A-TTAGAGGCTT--TGAG 2773
|||||||||||| || ||||||||||||||||| | | | | || || ||| | ||
Sbjct 2683 TTTTGTTGACAGAAATGCAGCTTTAGCTACATAG-A-AGGCTACTT-GA--CTTAATAAG 2737
Query 2774 TAGATTCTTAG-GATATTTAAATTTATT-TGTAT-TGTA--TTCTAGATTCATTGAAAGT 2828
| || || | || || || || | | |||| | || || |||||||||| |||||
Sbjct 2738 T-GAGTCACAATGA-ATATA--TT-AGTGTGTAAATCTAACTTTTAGATTCATT-AAAGT 2791
Query 2829 ATCCAGTAAAGAGAAATTGTGTCATATGA-GA--GTTGAGAGAATTGTTTTGATCGACAA 2885
|| |||||||||||||||| ||||| | || |||||||||||||||| |||||||||
Sbjct 2792 ATTTAGTAAAGAGAAATTGTATCATAACAAGACAGTTGAGAGAATTGTTTGGATCGACAA 2851
Query 2886 GAAAAG 2891
||||||
Sbjct 2852 GAAAAG 2857
Score = 525 bits (284), Expect = 7e-148
Identities = 366/405 (90%), Gaps = 8/405 (2%)
Strand=Plus/Plus
Query 7 AAATTCTCCGATGGATTTCGATTCAGACTCCGATGGTTCTCATGTCTCCGCCACTCCTCC 66
||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAATTGTCCCATGGATTCCGATTCAGACTCCGATGGTTCTCATGTCTCCGCCACTCCTCC 63
Query 67 CCGAGACTCATTTCCGTCATCGCCGCCGCAACTTC---AGTCACCGGCTAAGCATGTGCC 123
|||||||||||||||| |||||||||||| ||||| || ||||| |||||||||||||
Sbjct 64 CCGAGACTCATTTCCGCCATCGCCGCCGCCACTTCTTCAGCCACCGCCTAAGCATGTGCC 123
Query 124 GCCGGTCTCCCGGAAAATGACGTCTTCTTCCTCTCGCTCGAAGCCCAAAGCACCTACACA 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 124 GCCGGTCTCCCGGAAAATTACGTCTTCTTCCTCTCGCTCGAAGCCCAAAGCACTTACACA 183
Query 184 TCCGCCGCCAAATCCCTCACAGGAAGCTCCAGTACCGTctccctatcctcctcctcctcc 243
||||| || ||||||||||||||||||||| | | | | || ||||||||||||||
Sbjct 184 GCCGCCTCCTAATCCCTCACAGGAAGCTCCAACATCATTTTCC---CCTCCTCCTCCTCC 240
Query 244 tccATCTCCACTATTTACCAATCTCCCTTTCCGGATCTGCCAATCCCAACCCGCTAGGTT 303
|||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 241 TCCATCTCCATTATTCACCGATCTCCCTTTCCGGATCTGCGAATCCCAACCCGCTAGGTT 300
Query 304 TTCTTCTTCCGTGTCGTCCTTCTCC-AGACTCTGCAGCAGAGCTTCTTTTACATCTGTTG 362
|||||||||| | |||||||| ||| |||||| |||||||||||||||||||| || ||
Sbjct 301 TTCTTCTTCCATATCGTCCTT-TCCCAGACTCCGCAGCAGAGCTTCTTTTACACCTAATG 359
Query 363 AGAAATTGAAATCGGACGGCGTCGATTTTGTGCCTGAGCCACCTC 407
||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 360 AGAAATTGAAATCAGACGGCGTCGATTTTGTGCCGGAGCCGCCTC 404
> Ahg951958 jgi|Araly1|951958|scaffold_2600009.1
Length=563
Score = 617 bits (334), Expect = 1e-175
Identities = 382/406 (94%), Gaps = 0/406 (0%)
Strand=Plus/Plus
Query 968 TTGGTTTCGTTGATGATTGATCAGTTGAAGCATTTGCCTTCTATCATTAAGGGTGGTCTC 1027
||||||||| | ||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 9 TTGGTTTCGCTCATGATCGATCAGTTGAAGCATTTGCCTTCAATTATTAAGGGTGGTCTC 68
Query 1028 TTGAGCAGTAGCCAGAGACCTGAGGAAGCAACGGAGACATTGCGGAAACTTAAAGAAGGC 1087
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 69 TTGAGCAGTAGCCAGAGACCAGAGGAAGCAACAGAGACATTGCGGAAACTTAAAGAAGGC 128
Query 1088 ATAATAAAGGTTCTCTTTGTATCTCCTGAGAGACTTCTGAATGTAGAATTTTTGTCAATG 1147
|||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||
Sbjct 129 ATAATAAAGGTTCTCTTTGTATCTCCCGAGAGACTTCTGAATCTAGAATTTCTGTCAATG 188
Query 1148 TTTCGCATGTCTTTATCTGTGTCACTTGTCGTGGTTGATGAGGCACACTGCGTATCAGAA 1207
|||||| |||||||||||||||||||||| || || |||||||| |||||| ||||||||
Sbjct 189 TTTCGCTTGTCTTTATCTGTGTCACTTGTAGTCGTGGATGAGGCGCACTGCATATCAGAA 248
Query 1208 TGGTCTCATAACTTCCGTCCTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAA 1267
||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 249 TGGTCTCATAACTTCCGCCCTTCATACATGAGACTCAAGGCATCAATGCGGTTTTCTGAA 308
Query 1268 CTCAAGGCAGAATGCATTCTCGCGATGACCGCAACTGCCACTACAATGACTCTTCAGGCT 1327
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||
Sbjct 309 CTCAAGGCAGAATGCATTCTCGCGATGACTGCAACAGCCACTACTATGACTCTTGAGGCT 368
Query 1328 GTCATGTCTTCACTAGAGATACCGTCAACCAATCTTATTCAGAAGT 1373
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 369 GTCATGTCTGCACTAGAGATACCGTCAACCAATCTTATTCAGAAGT 414
> Ahg890779 jgi|Araly1|890779|Al_scaffold_0007_2765
Length=3450
Score = 198 bits (107), Expect = 2e-49
Identities = 121/128 (95%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 969 TGGTTTCGTTGATGATTGATCAGTTGAAGCATTTGCCTTCTATCATTAAGGGTGGTCTCT 1028
|||||||| | ||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 674 TGGTTTCGCTCATGATCGATCAGTTGAAGCATTTGCCTTCAATTATTAAGGGTGGTCTCT 733
Query 1029 TGAGCAGTAGCCAGAGACCTGAGGAAGCAACGGAGACATTGCGGAAACTTAAAGAAGGCA 1088
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 734 TGAGCAGTAGCCAGAGACCAGAGGAAGCAACAGAGACATTGCGGAAACTTAAAGAAGGCA 793
Query 1089 TAATAAAG 1096
||||||||
Sbjct 794 TAATAAAG 801
Score = 182 bits (98), Expect = 2e-44
Identities = 112/119 (94%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 1209 GGTCTCATAACTTCCGTCCTTCATATATGAGACTCAAGGCATCAATGCTGTTTTCTGAAC 1268
|||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||
Sbjct 845 GGTCTCATAACTTCCGCCCTTCATACATGAGACTCAAGGCATCAATGCGGTTTTCTGAAC 904
Query 1269 TCAAGGCAGAATGCATTCTCGCGATGACCGCAACTGCCACTACAATGACTCTTCAGGCT 1327
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||
Sbjct 905 TCAAGGCAGAATGCATTCTCGCGATGACTGCAACAGCCACTACTATGACTCTTGAGGCT 963
Score = 91.6 bits (49), Expect = 3e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1505 TATGAGACTGACATGATAAGCAAGTATTTACGCGATAACAACATCAATGCAAAGG 1559
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 964 TATGAGACTGACATGATAAGCAAGTATTTATGCGATAACAACATCAATTCAAAGG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110994973930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5