BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27910.1
Length=2879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921837 jgi|Araly1|921837|scaffold_103118.1 3886 0.0
Ahg947229 jgi|Araly1|947229|scaffold_703458.1 252 1e-65
> Ahg921837 jgi|Araly1|921837|scaffold_103118.1
Length=2348
Score = 3886 bits (2104), Expect = 0.0
Identities = 2266/2346 (97%), Gaps = 3/2346 (0%)
Strand=Plus/Plus
Query 332 CGAGTTATTGAAGCAATGGATGTTAATGAGGTTGAAGAAAATTTCTTTGCCCCTGGTGAT 391
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6 CGAGTTATTGAAGCAATGGATGTTAATGAGGTTGAAGAAAATTTCTTTGCCCCCGGTGAT 65
Query 392 GCCAAGCTACACGGAAAAATGTGCAATGCCCTTTCAGTGATCTACTGCAAGATCATGTCT 451
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GCCAAGCTACACGGAGACATGTGCAATGCCCTTTCAGTGATCTACTGCAAGATCATGTCT 125
Query 452 ATTTTCCCGTCGCTTGAAGCTGCTAGGCCGAGAAGCAAATCTGGAATTCAAGCTTTGTGT 511
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 126 ATTTTCCCGTCGCTTGAAGCTGCTCGGCCGAGAAGCAAATCTGGTATTCAAGCTTTGTGT 185
Query 512 TCACTTCACGTGGTTTTAGAAAAAGTGAAGAACATTCTACGCCATTGCACTGAATCTAGT 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TCACTTCACGTGGTTTTAGAAAAAGTGAAGAACATTCTACGCCATTGCACTGAATCTAGT 245
Query 572 AAACTTTATTTGGCTATAACAGGGGATTCAGTAGTTTTGAAATTTGAGAAGGCGAAATCA 631
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 246 AAACTTTATTTGGCTATAACAGGGGACTCAGTAGTTTTGAAATTTGAGAAGGCGAAATCA 305
Query 632 TCTCTTACAGATAGCCTTAGGCGTGTTGAAGATATAGTCCAACAGTCTATTGGATCTCAG 691
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCTCTTATAGATAGCCTTAGGCGTGTTGAAGATATAGTCCAACAGTCTATTGGATCTCAG 365
Query 692 CTTTTGGAGATTTTGATGGAGTTAGAGAACACCGAGTTTTCACTTGATCCAGCAGAGAAG 751
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 366 CTTTTGGAGATTTTGATGGAGTTAGAGAACACCGAATTTTCACTTGATCCATCAGAGAAG 425
Query 752 GAAATTGGCGATCAAATCATTGGATTGCTGCAACAAGGGGGGAATTTTGAGAGCTCATCT 811
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 426 GAAATTGGGGATCAAATCATTGGATTGCTGCAACAAGGGGGGAATTTTGAGATCTCAACT 485
Query 812 GATAATAATGAACTTGAGGTTTTCCATCAGGCTGCTACTAGACTAGGTATCACTTCTTCT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GATAATAATGAACTTGAGGTTTTCCATCAGGCTGCTACTAGACTAGGTATCACTTCTTCT 545
Query 872 AGAGCAGCTCTCACAGAGCGAAGATGCCTCAAGAAACTCATTGAGAGGGCCCGAATGGAG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 AGAGCAGCTCTCACAGAGCGAAGATGCCTCAAGAAACTCATTGAGAGGGCCCGAATGGAG 605
Query 932 GATGACAAGAGGAAAGAATCAATTGTGGCTTATTTATTACATCTCATGAGGAAATACTCA 991
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 606 GATGACAAGAGGAAAGAATCAATAGTGGCTTATTTATTACATCTTATGAGGAAATACTCA 665
Query 992 AAGCTATTCAGAAGTGAGATCTGGGATGACAATGATTCACAGGGTAGTAGTTCATTGCCT 1051
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 666 AAGCTATTCAGAAGTGAGATTTGGGATGACAATGATTCACAGGGTAGTAGTTCATTGCCT 725
Query 1052 TGTTCACCTACTATCCAGGGTTCTATAGACGATGCCCATGGTCGTGCTTTTGACCGTCAG 1111
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 726 TGTTCACCTACTATCCAGGGTTCTCTTGACGATGCCCATGGTCGTGCATTTGACCGTCAG 785
Query 1112 CTGTCAAAACTGAGTTCCTTTAACTTCAGATCCTGCAATAACAATAGGAGATCTTCGCAG 1171
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||| |||
Sbjct 786 CTGTCAAAACTGAGTTCCTTCAACTTCAGATCTTGCAATAACAATAGGAAATCTTTACAG 845
Query 1172 ATGTCTGTTCCGCCAGAAGAATTGAGGTGTCCGATATCTTTGCAGCTTATGTATGACCCT 1231
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 846 ATGTCTGTTCCGCCAGAAGAATTGAGGTGTCCAATATCTTTGCAGCTTATGTATGACCCT 905
Query 1232 GTCATTATCGCGTCTGGGCAAACATATGAGAGAATCTGTATTGAGAAATGGTTTAGTGAT 1291
|| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 906 GTAATTATCGCGTCTGGGCAAACTTATGAGAGAATCTGTATCGAGAAATGGTTTAGTGAT 965
Query 1292 GGACACAACACATGTCCCAAAACTCACCAGCAGCTCTCTCATCTTTGCTTGACTCCTAAC 1351
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 966 GGACACAACACATGTCCCAAAACTCACCAGCAGCTTTCTCATCTATGCTTGACTCCTAAC 1025
Query 1352 TACTGTGTCAAGGCTCTAATTTCTAGCTGGTGTGAACAGAACGGCGTTCAGGTCCCTGAT 1411
|| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1026 TATTGTGTCAAGGCTCTAATTTCTAGCTGGTGTGAACAGAACGGTGTTCAGGCCCCTGAA 1085
Query 1412 GGACCCCCTGAGTCTCTAGACCTTAACTATTGGAGGTTGGCGTTGTCTGTGTCCGAGTCC 1471
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1086 GGACCGCCTGAGTCTCTAGACCTTAATTATTGGAGGTTGGCGTTGTCTGTGTCCGAGTCT 1145
Query 1472 ACCGATACGAGATCAGCAAAACGTGTTGGTTCTTGTAAGTTGAAGGATGTGAAGGTGGTT 1531
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ACCGACACGAGAACAGCAAAACGTGTTGGTTCTTGTAAGTTGAAGGATGTGAAGGTGGTT 1205
Query 1532 CCTTTGGAAGAAAGTGGAACCATTAAAGAGGAAGCCTGTGAATCAGAATACCAGGAAGAT 1591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1206 CCTTTGGAAGAAAGTGGAACCATTAAAGAGGAAGCCTGTGAATCAGAATACCAGGATGAT 1265
Query 1592 CAAGTTACTCTTGTTGAAAGATGTACGGAATTGTTGACCACTTTAACTGACGTGGATACC 1651
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1266 CAAGTTACTCTTGTTGAAAGATGTACGGAATTGTTGACCACTTTAAGTGAAGTGGATACC 1325
Query 1652 TTAAGAAAGAAATGCAGAGTTGTTGAGCAGATAAGAGTATTGCTAAAAGATGATGAGGAG 1711
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1326 TTAAGGAAGAAATGCAGAGTTGTTGAGCAGATAAGATTATTGCTAAAAGATGATGAGGAG 1385
Query 1712 GCCAGGATTCTCATGGGGGAAAATGGGTGTGTTGAAGCGTTGCTTCAGTTTCTGGGATCA 1771
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1386 GCCAGGATTTTCATGGGGGAAAATGGGTGTGTTGAAGCGTTGCTTCAGTTTCTAGGATCA 1445
Query 1772 GCTCTGAATGAAAATAACGCTTCAGCCCAAAAAGTTGGAGCCATGGCTCTCTTTAACTTG 1831
||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1446 GCTCTTACTGAAAATAACGCTTCAGCCCAGAAAGTTGGAGCCATGGCTCTCTTTAACTTG 1505
Query 1832 GCTGTGGACAACAACAGGAACAAAGAGTTGATGCTAGCATCAGGAATTATTCCTTTGCTG 1891
|||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1506 GCTGTGGACAGCAACAGGAACAAGGAGTTGATGCTAGCATCAGGAATTATTCCTCTGCTG 1565
Query 1892 GAGGAAATGCTCTGTAATCCACATTCCCATGGTTCAGTGACGGCAATTTATCTGAACCTC 1951
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1566 GAGGAAATGCTCTGTAATCCACATTCCCATGGTTCAGTGACGGCACTTTATCTGAACCTT 1625
Query 1952 TCGTGTCTTGAAGAAGCAAAGCCCGTAATAGGTTCGAGTCTGGCAGTTCCTTTCATGGTA 2011
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1626 TCGTGTCTTGAAGAAGCAAAGCCTGTAATAGGTTCGAGTCTGGCTGTTCCTTTCATGGTA 1685
Query 2012 AATCTTCTTTGGACCGAGACTGAAGTCCAGTGCAAAGTCGATGCCCTTCACTCCCTTTTT 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 AATCTTCTTTGGACCGAGACTGAAGTCCAGTGCAAAGTCGATGCCCTTCACTCCCTTTTT 1745
Query 2072 CACCTGTCCACCTACCCTCCCAATATCCCCTGCCTTTTATCTGCTGACCTTGTCAACGCC 2131
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1746 CACCTGTCCACCTACCCTCCCAATATCCCCTGCCTTTTATCTGCTGACATTGTCAGCGCC 1805
Query 2132 CTTCAATCACTCACTATCAGTGATGAGCAACGGTGGACAGAAAAGTCCTTAGCTGTTCTA 2191
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1806 CTTCAGTCACTCACTATCAGTGATGATCAACGATGGACAGAAAAGTCCTTAGCTGTTCTA 1865
Query 2192 CTTAATTTGGTATTGAACGAGGCAGGAAAAGACGAGATGGTTTCAGCACCTAGCCTTGTG 2251
|| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1866 CTAAATTTGGTTTTGAACGAGGCAGGAAAAGACGAGATGGTTTCAGCACCTGGCCTTGTG 1925
Query 2252 AGCAATCTCTGCACCATTCTTGACACGGGTGAACCAAATGAGCAAGAACAAGCTGTTTCT 2311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 AGCAATCTCTGCACCATTCTTGACACGGGTGAACCAAATGAGCAAGAACAAGCTGTTTCT 1985
Query 2312 TTGCTTCTGATATTATGCAATCACAGTGAGATCTGTAGCGAGATGGTTTTACAAGAAGGA 2371
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1986 TTGCTTCTGATATTATGCAATCACAGTGAGATATGTAGCCAGATGGTTTTACAAGAAGGA 2045
Query 2372 GTGATACCTTCTTTGGTATCTATCTCCGTAAACGGTACTCAACGTGGAAGAGAAAGGGCA 2431
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2046 GTGATACCTTCGTTGGTATCTATTTCCGTAAACGGTACTCAACGTGGAAGAGAAAGGGCA 2105
Query 2432 CAGAAGCTACTGACACTATTCAGGGAACTGAGGCAAAGGGATCAAACCCATCTCACAGAA 2491
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2106 CAGAAGCTACTGACACTATTCAGGGAACTGAGGCAAAGGGATCAAACCCATCTAACAGAA 2165
Query 2492 CCGCAGCATACAGAAGTCACAAGCCCCGAGGACGGATTCTCTGTTGCTTCAGCCGCTGTA 2551
|| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2166 CCACAGCATACAGTAGTCACAAGCCCCGAGGACGGATTCTCTGTTGCTGCAGCCGCTGTA 2225
Query 2552 ACAGAGACAAAACCGCAGTGTAAATCAGCCTCGAGAAAGAAAATGGGAAGAGCATTCAGC 2611
|||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2226 ACAGAGTCAAAACCGCAATGTAAATCAGCTTCGAGAAAGAAAATGGGAAGAGCATTCAGT 2285
Query 2612 TTTCTATGGAAAAGTAAGAGCTTCTCAGTTTACCAGTGTTGAGTCATGTCTTTATTACCT 2671
|||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 2286 TTTCTATGGAAAAGCAAGAGCTTCTCAGTTTACCAGTGTTGAGTC-TGG-TTT-TTACCT 2342
Query 2672 TTAGTT 2677
||||||
Sbjct 2343 TTAGTT 2348
> Ahg947229 jgi|Araly1|947229|scaffold_703458.1
Length=290
Score = 252 bits (136), Expect = 1e-65
Identities = 216/253 (85%), Gaps = 12/253 (5%)
Strand=Plus/Plus
Query 341 GAAGCAATGGATGTT-AATGAGGTTGAAGAAAATTTCT-TTGCCCCTGGTGATGCCAAGC 398
||| |||||||| || || ||| ||||||| |||| | ||||||||||||||||||||
Sbjct 16 GAA-CAATGGAT-TTGAACGAGTTTGAAGATTATTT-TAATGCCCCTGGTGATGCCAAGC 72
Query 399 TACACGGAAAAATGTGCAATGCCCTTTCAGTGATCTACTGCAAGATCATGTCTATTTTCC 458
|| | ||| |||| |||||| | ||| ||||||||| ||||||| ||||||||||||||
Sbjct 73 TATATGGAGAAATATGCAATACATTTTTAGTGATCTATTGCAAGACCATGTCTATTTTCC 132
Query 459 CGTCGCTTGAAGCTGCTAGGCCGAGAAGCAAATC-TGGAATTCAAGCTTTGTGTTCACTT 517
|||||||||||||||| || ||||||| | | ||| |||||||||||||||||||||
Sbjct 133 GGTCGCTTGAAGCTGCTCTGCTTAGAAGCAGA-CATGGGATTCAAGCTTTGTGTTCACTT 191
Query 518 CACGTGGTTTTAGAAAA-AGTGAAGAA-CATTCTACGCCATTGCACTGAATCTAGTAAAC 575
||| ||||| ||||||| | |||| || ||||||| ||||||||||||||||||||||||
Sbjct 192 CACCTGGTTCTAGAAAACA-TGAA-AAGCATTCTATGCCATTGCACTGAATCTAGTAAAC 249
Query 576 TTTATTTGGCTAT 588
||||||||| |||
Sbjct 250 TTTATTTGG-TAT 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108671468985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5