BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27920.1
Length=1847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472993 jgi|Araly1|472993|fgenesh2_kg.1__2947__AT1G27920.1 2556 0.0
> Ahg472993 jgi|Araly1|472993|fgenesh2_kg.1__2947__AT1G27920.1
Length=1747
Score = 2556 bits (1384), Expect = 0.0
Identities = 1615/1725 (94%), Gaps = 22/1725 (1%)
Strand=Plus/Plus
Query 121 AAAAGAAAAGAAAACATTGCAGAATTATCCATCCGAATATGGGTTCGCTTCAGACACCGA 180
||||||||||| ||||||||||| |||||||||||| ||||| || |||||||||||||
Sbjct 36 AAAAGAAAAGACAACATTGCAGAGCTATCCATCCGAAGATGGGATCCCTTCAGACACCGA 95
Query 181 TAGAAATGAGAAGCTCATCGTTGTTGGATACGTCCTGCGGATATTTGCTCAGAGAGTT-- 238
||| |||||||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct 96 TAGGAATGAGAAGCTCCTCTTTGTTAGATACATCCTGCGGATATTTGCTCAGAGAGTTAC 155
Query 239 A--C-AG---ATGATATGGGATGAAGTTGGAGAAGATAAGTTTGAGAGAGAAAAAGTGTT 292
| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 AGGCAAGTTTATGATATGGGATGAAGTTGGAGAAGATAAGTTTGAGAGAGAAAAAGTGTT 215
Query 293 GCTTGATATAGAGCAGGAATGTGTAGAGGCTTACCGGAGAAAAGTTGACCATGCCAATGT 352
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 216 GCTTGATATAGAGCAGGAATGTGTAGAGGCTTACCGGAGAAAAGTTGACCAGGCCAATGT 275
Query 353 TTCGAGGTCTCGTCTACATCAAGAGCTGGCAGAATCTGAAGCCGAACTCACCCATTTTCT 412
||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 276 TTCAAGGTCTCGTCTACATCAAGAGCTGGCAGAAACTGAAGCCGAAGTCACCCATTTTCT 335
Query 413 TTTGTGCCTCGGTGAAAGATCAGTACCTGGAAGACCGGAGAAAAAGGGAGGAACACTGAG 472
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 336 TTTGTGCCTCGGTGAAAGATCAGTACCTGGAAGGCCGGAGAAAAAGGGAGGAACACTGAG 395
Query 473 GGAGCAGCTGGATTCTATTGCGCCTGCACTGCGTGAGATGAGGCTTAGGAAAGACGAGAG 532
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 396 GGAGCAGCTGGATTCTATTGCGCCTGCACTGCGTGAGATGAGGCAGAGGAAAGATGAGAG 455
Query 533 AGTGAAGCAGTTCCGATCTGTCAAAGGGGAAATTCAGAAAATATCAGCAGAAATAGCAGG 592
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 456 AGTGAAGCAGTTCCGATCTGTCAAAGGGGAAATTCAGAAAATTTCAGCAGAAATCGCAGG 515
Query 593 TAGATCGACATATGAAGACTCAACTAGAAAGATAACCATAGATGACAACGATCTTTCTAA 652
|| | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 516 TAAACCAACATATGAAGACTCATCTAGAAAGATAACCATAGATGACAACGATCTTTCTGA 575
Query 653 TAAAAAACTTGAGGAATATCAGAATGAACTGCATAGACTCCATGATGAGAAGAATGAGAG 712
||| ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 576 TAAGAAACTCGAGGAATATCAGAACGAACTGCATAGACTCAATGATGAGAAGAATGAGAG 635
Query 713 ACTACAGAAGGTTGATATATACATATGCGCCATTCGAGATCTATCAGCAACATTGGGAAC 772
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 636 ACTACAGAAGGTTGATATATACATATGCGCCATTCGAGATCTATCAGCTACATTGGGAAC 695
Query 773 AGAAGCATCAATGATCATAACAAAGATTCACCCAAGCTTGAACGACCTCTATGGAATATC 832
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 696 AGAAGCATCAATGATCATAACAAAGATTCACCCAAGCCTGAACGACCTCTATGGAATATC 755
Query 833 CAAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTGGAAGA 892
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 756 CAAAAACATCAGTGATGATATCTTAAAAAAGCTTAATGGCACTGTTGTGTCTCTCGAAGA 815
Query 893 GGAAAAGCACAAGCGCCTTGAAAAGCTTCACCATCTTGGTAGAGCTTTATCGAACCTGTG 952
|||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 816 GGAAAAACACAAGCGCCTTGAAAAGCTTCACCATCTTGGTAGAGCTTTATCGGACTTGTG 875
Query 953 GAATCTGATGGATGCATCTTATGAAGATCGTCAAAAGTTTTTTCATGTCATTGATTTACT 1012
| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 876 GGATCTGATGGATGCATCTTATGAAGATCGTCAAAAGTTTTCTCACGTCATTGATTTACT 935
Query 1013 GTCGTCCGCACCATCAGACGTGTGTGCTCCTGGAAGCATTACATTGGACATAATTCAGCA 1072
|| | |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 936 ATCATTTGCACCATCAGACGTGTGTGCTCCTGGCAGCATTACATTAGACATAATTCAACA 995
Query 1073 GGCTGAGGCTGAAGTCAAGAGACTAGATCAACTGAAAGCAAGCAGAATCAAAGAACTTTT 1132
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 GGCTGAGGCTGAAGTCAAGAGACTAGATCAACTGAAAGCAAGCAGAACCAAAGAACTTTT 1055
Query 1133 CATCAAGAAGCAAAAGGAACTAGAAGATACGTGCAACATGTCGCATATGGAGACTCCATC 1192
| |||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 1056 CCTCAAGAAGCAAAAGGAACTAGAGGATACATGCAACATATCGCATATGGAAACTCCATC 1115
Query 1193 AACGGAAATGGGAAATATCACGAACCTTGTAGACTCTGGGGAAGTTGACCATGTTGACCT 1252
||| ||||| |||||||| | ||||||||||||||| || ||||||||||||||||||||
Sbjct 1116 AACCGAAATAGGAAATATAATGAACCTTGTAGACTCCGGAGAAGTTGACCATGTTGACCT 1175
Query 1253 TCTAGCCGCCATGGATGAAAAGATAGCAAGAGCAAAGGAAGAAGCAGCAAGTAGAAAAGG 1312
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1176 TCTCGCCGCCATGGATGAAAAGATAGCAAAAGCAAAGGAAGAAGCAGCAAGTAGAAAAGG 1235
Query 1313 AATAATTGAAAAAGTTGATAGGTGGATGTTGGCAAGTGATGAAGAGCGCTGGCTAGAAGA 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 AATAATTGAAAAAGTTGATAGGTGGATGTTGGCAAGTGATGAAGAGCGCTGGCTAGAAGA 1295
Query 1373 ATATGACCAGGACGAGAATCGGTACTCAGTAAGTAGAAATGCTCATCGAAACCTAAGGAG 1432
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 ATATGACCAGGATGAGAATCGGTACTCAGTAAGTAGAAATGCTCATCGAAACCTAAGGAG 1355
Query 1433 AGCAGAACGGGCACGCATAACAGTCAGCAAAATCTCAGGATTAGTGGAATCTATATTGGT 1492
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1356 AGCAGAACGGGCACGCATAACAGTCAGCAAAATCACAGGATTAGTGGAATCTATATTGGT 1415
Query 1493 TAAGGCTAAGAGCTGGGAGGTAGAAAGACAGAAAGTCTTCTTATACAATGAGGTACCTCT 1552
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 CAAGACTAAGAGCTGGGAGGTAGAAAGACAGAAAGTCTTCTTATACAATGAGGTACCTCT 1475
Query 1553 TGTTGCAATGTTGCAAGAATACAATAAGCTGAGGCAGGAAAAAGAAATGGAGAAGCAAAG 1612
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1476 TGTTGCAATGTTGAAAGAATACAATAAGCTGAGGCAGGAAAAAGAAGTGGAGAAGCAAAG 1535
Query 1613 GCTCCGGGAAATGAAGAAGATGAGCATTCCACAACCTGTGGCTGAGGGAGATAATTTTTA 1672
||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |
Sbjct 1536 ACTCCGGGAAATGAAGAAGATGGGCATTCCACAACCTGTGGCTGAGCCAGATAGTTTTCA 1595
Query 1673 CATGGCAAGGCCAGCTAGCAGCAATAGGCGAATATCAAATCGAAGCATGAATGGTGGATT 1732
|||| |||||||||||| ||||||| |||||||| |||| |||||||| |||||||||
Sbjct 1596 CATGTCAAGGCCAGCTACCAGCAATCGGCGAATAACAAACCGAAGCATCAATGGTGGA-- 1653
Query 1733 TGGAAGTGGAAGTCCTATAAACAGAAAGTATTCAGGAGGATTCAACAATACTAACAA-TA 1791
| || ||||||||| |||||| ||||||||| |||| ||| | || | | ||
Sbjct 1654 ---A-GT------CCTATAAACCGAAAGTGTTCAGGAGGGTTCAGCAACAATA-CTAGTA 1702
Query 1792 ATTACACAGCACTTGGTACATCTATAAGAAGAGAAAGCAGAAAGA 1836
|||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1703 ATTACACAGCACTTGGAACATCTATGAGAAGCGAAAGCAGAAAGA 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69362336145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5