BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27930.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921839 jgi|Araly1|921839|scaffold_103120.1 1441 0.0
> Ahg921839 jgi|Araly1|921839|scaffold_103120.1
Length=911
Score = 1441 bits (780), Expect = 0.0
Identities = 865/906 (95%), Gaps = 5/906 (1%)
Strand=Plus/Plus
Query 318 gatctgagatcgaacaaaacaacatgaacaCGTTAATCCCATCGGAGAAAAGATGGATCA 377
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GATCTGAGATCGAAC--AA-AACATGAACACGTTAATCCCATCGGAGAAACGATGGATCA 57
Query 378 TCACCGGCGTTTTACTAGCCGGTTTAGTTGGCGGTGCTTTGCTTTTCACAAGCTTCATAC 437
||||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct 58 TCACCGGTGTTTTACTCGCGGGTTTAGTTGGCGGTGCTTTACTCTTCACAAGCTTCATAC 117
Query 438 GAGCCGCTGACGAAACGCTCTTCCTCTGTTCCACAGC-AAGCGCCAAAAGCAGAGCGGTG 496
|||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||
Sbjct 118 GAGCCGCTGACGAAACTCTCTTCCTCTGTTCCACCGCGAA-CGCCAAAAGCAGAGCGGTG 176
Query 497 GCTGCGGCAGCTGATTACGAAGCGACTCCGATTCAGCTTCAAGCGATCGTCCACTACGCG 556
||||| || |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 177 GCTGCAGCGGCTGATTATTCAGCGACTCCGATCCAGCTTCAAGCGATCGTCCACTACGCG 236
Query 557 ACATCTAACGTTGTCCCACAACAGAATCTTGCTGAGATCTCGATCTCTTTCAACATCTTG 616
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACATCTACCGTTGTCCCGCAACAGAATCTTGCTGAGATCTCGATCTCTTTCAACATCTTG 296
Query 617 AAAAAGCTAGCTCCGGCTAACTTTCTCGTGTTCGGTCTCGGTCGTGACTCGCTCATGTGG 676
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 297 AAAAAGCTAGCTCCGGCTAACTTCCTCGTGTTCGGTCTCGGCCGCGACTCGCTCATGTGG 356
Query 677 GCTTCTTTAAATCCACGTGGCAAAACCTTGTTCTTGGAAGAAGATCTTGAATGGTTTCAG 736
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCTTCTTTAAATCCACGTGGGAAAACCTTGTTCTTGGAAGAAGATCTTGAATGGTTTCAG 416
Query 737 AAAGTGACCAAAGACTCTCCTTTCTTACGTGCGCATCACGTGCGTTACAGGACGCAGCTT 796
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 417 AAAGTGACCAAAGACTCTCCTTTCTTACGTGCGCATCACGTGCGTTATAGGACGCAGCTT 476
Query 797 CAACAAGCCGATTCGCTTCTACGTTCGTACAAAACGGAGCCTAAGTGTTTTCCGGCGAAA 856
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 477 CAACAAGCCGATTCGCTTCTACGTTCGTACAAAACGGAGCCAAACTGTTTTCCGGCGAAA 536
Query 857 TCTTATCTCCGGGGAAACGAGAAGTGTAAGCTAGCTCTCACGGGACTGCCCGATGAGTTC 916
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 537 TCTTATCTCCGGGGAAACGAGAAGTGTAAGCTAGCTCTCACGGGACTCCCCGATGAGTTC 596
Query 917 TACGATACAGAGTGGGATCTGCTGATGGTCGATGCTCCTAAAGGTTACTTCGCAGAAGCT 976
||||||||||||||||||||| | ||| ||||||||||||||||||||||| | ||||||
Sbjct 597 TACGATACAGAGTGGGATCTGTTAATGCTCGATGCTCCTAAAGGTTACTTCCCTGAAGCT 656
Query 977 CCGGGAAGAATGGCGGCGATTTTCTCGGCGGCTGTTATGGCTAGGAACCGGAAGAAACCG 1036
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 657 CCGGGAAGAATGGCGGCGATTTTCTCGGCGGCGGTTATGGCTAGGAACCGGAAGAAACCA 716
Query 1037 GGAGTTACGCACGTGTTCTTGCACGATGTTAATCGGAGGGTGGAGAAGACTTTTGCCGAG 1096
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 717 GGAGTTACGCACGTGTTCTTGCACGACGTTAATCGGAGGGTGGAGAAGACTTTCGCCGAA 776
Query 1097 GAGTTTTTATGCCGGAAGTATAGAGTCAACGCCGCCGGGAGGTTATGGCATTTTGCTATT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 777 GAGTTTTTATGCCGGAAGTATAGAGTCAACGCCGCCGGGAGGTTATGGCATTTCGCTATT 836
Query 1157 CCTCCGGCGGCTGCGAACGCTACGATTGACTCTGGTGATTATAGGTTTTGCTAAGATTGC 1216
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 CCTCCGGTGGCTGCGAACGCTACGATTGACTCTGGTGATTATAGGTTTTGCTAAGATTGC 896
Query 1217 GACACG 1222
||||||
Sbjct 897 GACACG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5