BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27950.1
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921841 jgi|Araly1|921841|scaffold_103122.1 983 0.0
> Ahg921841 jgi|Araly1|921841|scaffold_103122.1
Length=718
Score = 983 bits (532), Expect = 0.0
Identities = 669/731 (92%), Gaps = 26/731 (4%)
Strand=Plus/Plus
Query 7 GTAATTGAACAAAAGAAAGAAAAACTGATAATGAAGGGTCTTCATCTCCACCTCGTCCTA 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 GTAATTGAACAAAAGAAAGAAAAACTGATAATGAAGGGTCTTCATCTCCACCTCTTCCTA 60
Query 67 GTCACCATGACGATCGTTGCCTCCATCGCCGCCGCTGCACCGGCTGCTCC--C----GGA 120
|||||||||||||||||||||||||||||| | || ||||| |||||||| | |||
Sbjct 61 GTCACCATGACGATCGTTGCCTCCATCGCCACGGCGGCACCTGCTGCTCCAGCGGGTGGA 120
Query 121 GGAGCTCTGGCTGATGAATGCAACCAGGATTTTCAAAAGGTGACTTTGTGTTTGGACTTT 180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGCTCTGGCTGACGAATGCAGCCAGGATTTTCAAAAGGTGACTTTGTGTTTGGACTTT 180
Query 181 GCGACCGGGAAGGCAACAATTCCGTCTAAGAAGTGTTGTGACGCTGTTGAAGATATCAAA 240
|||||||| |||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCGACCGGTAAGGCAACGACGCCGTCTAAGAAGTGTTGTGACGCTGTGGAAGATATCAAA 240
Query 241 GAAAGAGATCCAAAGTGTTTGTGTTTCGTTATACAACAAGCGAAGACAGGAGGACAAGCC 300
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 GAAAGAGATCCAAAGTGTTTGTGTTTCGTGATACAACAAGCAAAGACAGGAGGACAAGCC 300
Query 301 TTGAAGGATCTTGGTGTTCAAGAAGACAAACTCATTCAACTCCCAACTTCTTGTCAGCTC 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TTGAAGGATCTTGGTGTTCAAGAAGACAAACTCATTCAACTCCCAACAGCTTGTCAGCTC 360
Query 361 CACAACGCTAGCATTACCAACTGTCCAAAGCTTCTAGGGATTTCACCTAGCTCGCCAGAC 420
||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 361 CACAACGCTAGCATTACCAACTGTCCAAAGCTTCTAGGGCTTTCGCCGAGCTCGCCAGAC 420
Query 421 GCAGCCGTATTCACAAACAATGCCACAACA--A-CA-C-C-GGTGGCACCAGCAGGAAAG 474
|||||||||||||||||||||||||||||| | || | | ||||||||| |||||||||
Sbjct 421 GCAGCCGTATTCACAAACAATGCCACAACATCAACAACACCGGTGGCACCGGCAGGAAAG 480
Query 475 TCTCCGGCAACTCCAGCTACGTCCACGGATAAGGGAGGATCAGCTTCAGCAAAGGATGGT 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TCTCCGGCAACTCCAGCTACGTCCACGGATAAGGGAGGATCAGCTTCCGCAAAGGATGGT 540
Query 535 CACGCAGTCGTTG-CTCTAGCCGTCGCTTTGATGGCCGTCTCCTTTGTCTTGACCTTGCC 593
||||| || ||| |||||||| ||||||||||| |||||||||| |||| |||||||||
Sbjct 541 CACGCCGTT-TTGGCTCTAGCCATCGCTTTGATGACCGTCTCCTTCGTCTCGACCTTGCC 599
Query 594 TAGACATGTCACATTAGGGATGTAATCTTTTCTTATGAAGTTGGTTGGTGCTTTTGTTTT 653
||||||||| || |||||||||||||||||||| || | | | | || || ||
Sbjct 600 TAGACATGTGACTTTAGGGATGTAATCTTTTCTAATTTA-T-GAA-G-TGGTTG-GT--- 651
Query 654 TGTCCCTTTTGTTTCAAAACTTATCTTTCAAGTGTGTTTCTTTGTTCGGACATTTGTTGT 713
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 -G-C--TTTTGTTTCAAAACTTATCTTTCAAGTGTGTTTCTTTGTTCGGACATTTGTTGT 707
Query 714 AATGAGTCAAC 724
|||||||||||
Sbjct 708 AATGAGTCAAC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29011539837
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5