BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27960.1
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472997 jgi|Araly1|472997|fgenesh2_kg.1__2951__AT1G27960.1 2457 0.0
> Ahg472997 jgi|Araly1|472997|fgenesh2_kg.1__2951__AT1G27960.1
Length=1964
Score = 2457 bits (1330), Expect = 0.0
Identities = 1567/1677 (93%), Gaps = 34/1677 (2%)
Strand=Plus/Plus
Query 274 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGAACCACTCACACT-CGGATG 332
|||||||||||||||||||||||||||||||||||||||| |||| |||| | | ||||
Sbjct 296 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGTACCATTCAC-GTACAGATG 354
Query 333 TTCCTAGCTTTGACAAAGTCTCTCCTGGCATGATAAATGAAATGTTTTACCATAGTAATG 392
| || |||||||| ||||| |||||||||||| |||||||||| |||||||| ||||||
Sbjct 355 TCCCAAGCTTTGAAAAAGTTTCTCCTGGCATGCGAAATGAAATGGTTTACCATGGTAATG 414
Query 393 GTGTACCATCAGATTTTCAGAGGTCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 452
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 GTGTACCATCAGATTTTCAGAGATCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 474
Query 453 ATTATGGCGACCTCTATGCTGATGATTCAAGATATTTCGTTCCTTTTCACTTATCAAATC 512
|||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||
Sbjct 475 ATTATGGCGACCTCTATGCTGATGATTCAAGACATTTCGTTCCTTTTGACTTATTAAATG 534
Query 513 AGCAGTATCCAACCCCTGAAGATATTCATCTTTCTCCGGAGTTTCACATGTTTCAGGCGA 572
|||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 535 AGCAGTATCCAAACCCTGAACATATTCATCTTTCTCCGGAGTTTCACATGTTCCAGGCGA 594
Query 573 ACTCTAGACATTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGATTGATAATATGA 632
||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 595 ACTCTAGACGTTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGACTGATTATGTGA 654
Query 633 TGCGCGCTAGGGGAAATTCTGTCTTAAGAGATAATATATATGGAGAACCTAGGGGTATGA 692
|||| ||||||||||||| || ||||||| || |||||||||||||||||||||||||||
Sbjct 655 TGCGAGCTAGGGGAAATTTTGGCTTAAGAAATGATATATATGGAGAACCTAGGGGTATGA 714
Query 693 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCATTGGCATCTACCAGACCATGTA 752
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 715 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCAATGGCATCTACCGGAACATGTA 774
Query 753 TG-AGACACCTTGGTTCAGCAGAATTGCTGGCAAATGATTTTAATATGGGTCCAGCACAT 811
|| || |||||||||||||||||||||| ||||||||| || ||||||||||||||||||
Sbjct 775 TGAAG-CACCTTGGTTCAGCAGAATTGCCGGCAAATGACTTCAATATGGGTCCAGCACAT 833
Query 812 GGAGGTTTGCATGATGCTTTTGAATCTGCTGCAAACTTAAGTTACAGAGAGCAAGCATAT 871
|||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 834 GGAGTTTTGCACGATGCTTTTGAATCTGCTGCAAGCTTAAGTTACAGAGAGCAAGCTTAT 893
Query 872 -GCTCAATGCAAAAGAAGCCCTTTCTCTGCTTCTTCTTCTAGCCCAACTTGGGAGAATGA 930
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 894 AG-TCAATGCAAAAAAAGCCCTTTCTCTGCTTCTTCTTCTATCCCAACTTGGGAGAATGA 952
Query 931 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGAAAGCTACAATGACTTCA-GCCACT 989
||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 953 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGGAAGCTACAATGACTT-ATGCCACT 1011
Query 990 GCCCTGCCATGCTTGATATGCTTACCGAGAGTAACAGAGGTCCGAGAGCATCCAGGCTAA 1049
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1012 ACCCTGCCATGCTTGATATGCTTACTGAGAGTAACAGAGGTCCGAGAGCATCGAGGCTAA 1071
Query 1050 ACAGTAAAAGTAAAATGATCTCTTATGATCGCGTTGATCGTTTTTGTCAGCAAGAATTGC 1109
|||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||
Sbjct 1072 ACAGTAAAAGTAAAATGATCACTTATGATCACGTTGATCG---TTGTCAACAAGAATTGC 1128
Query 1110 TCTCCCAATTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1169
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCTCCCAGTTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1188
Query 1170 ACAAGAGCATAAAGCATTGTGTTTGGGCAAGCACTAAAAATGGAAACAAAAAGTTGGATG 1229
|||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1189 ACAAGAGCATAAAGTATTGTGTTTGGGCTAGCACTAAAAACGGAAACAAAAAGTTGGATG 1248
Query 1230 CTGCCTATCGTGAAGCAAAGAAAAAGGACGTGGCATGCCCAGTCTTTCTCTTGTTTTCGG 1289
|||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1249 CTGCCTATCGTGAAGCGAAGAAAAAAGAAGTGGCATGCCCAGTCTTTCTCTTATTTTCGG 1308
Query 1290 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1368
Query 1350 CAAGTGTAGAGTACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1409
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CAAGTGTAGAATACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1428
Query 1410 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1488
Query 1470 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAAAAAGGTATAGAGATGT 1529
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1489 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAACAAGGTATAGAAATGT 1548
Query 1530 TAGATATATTCATCAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1589
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TAGATATATTCATTAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1608
Query 1590 AAGAGCGACAGATAGCTATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAATCGC 1649
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1609 AAGAGCGACAGAGAGCGATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAAGCGC 1668
Query 1650 TCGCACTTTCTGCAACCTCTGCTCC-A-ACAT-----AT-T-CTCTCCACGACGATTTTG 1700
||||||||||||||||||||| ||| | |||| || | ||||||||||||| ||||
Sbjct 1669 TCGCACTTTCTGCAACCTCTGTTCCGACACATCCCTCATATTCTCTCCACGACGAATTTG 1728
Query 1701 TAAGGGAAATGTCCAAGCACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1760
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 TAAGGGAAATGTCCAAGAACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1788
Query 1761 CCTCT-T-CTCTTTTAGGACTTGGGATTGGCTGAGGTTTAATTATGGTTT--T--TG--G 1812
||||| | |||| |||||||||| ||||||||||||||||| |||||||| | | |
Sbjct 1789 CCTCTCTTCTCTGTTAGGACTTGAGATTGGCTGAGGTTTAAATATGGTTTAATACTCTAG 1848
Query 1813 ATTTTGTACATTTGATAACGTACTTAAGGAGCATAGGTTGTAAGATAAAATTCAAGGTTC 1872
|||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 1849 ATTTTGTACATTTGATCACGGACTTAAGAAGCATAGGTTGTAAGATAAA-TTCAAGGTTC 1907
Query 1873 TAAAAGTCGGTATCTACACCTTCTTGACT-A--T-TT-GAAAGTTTAGTTTTCGACC 1924
|||||||||||||||| ||| |||||||| | | || ||||||||||||| |||||
Sbjct 1908 TAAAAGTCGGTATCTAAACCATCTTGACTTAACTATTTGAAAGTTTAGTTTACGACC 1964
Score = 148 bits (80), Expect = 1e-34
Identities = 138/162 (85%), Gaps = 19/162 (12%)
Strand=Plus/Plus
Query 55 TTCCT-T-TC-AGTATCAAAGAGATTCTCGCTTT-TGTCTAACTTTATCGTCTCTCTTCC 110
||||| | || ||| || ||||||||||| |||| | ||| ||||||||| |||| |
Sbjct 28 TTCCTCTCTCAAGTCTC-AAGAGATTCTCACTTTGTCTCTTACTTTATCG--TCTC-T-- 81
Query 111 TTTTTGCCTCCGATTGGCTGATTTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 170
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 82 TTTTT--CTCCGATTGGCTGA-TTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 138
Query 171 TTCCTCCTACTACTACTACTGGTTCATTTACGGGCCTAAATA 212
|||||||| | ||||| ||||||||||||||| ||||||
Sbjct 139 TTCCTCCT-C--CTACT---GGTTCATTTACGGGCTTAAATA 174
Score = 76.8 bits (41), Expect = 5e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1 ACTCCCAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCCAAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72523826480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5