BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G27960.1 Length=1930 Score E Sequences producing significant alignments: (Bits) Value Ahg472997 jgi|Araly1|472997|fgenesh2_kg.1__2951__AT1G27960.1 2457 0.0 > Ahg472997 jgi|Araly1|472997|fgenesh2_kg.1__2951__AT1G27960.1 Length=1964 Score = 2457 bits (1330), Expect = 0.0 Identities = 1567/1677 (93%), Gaps = 34/1677 (2%) Strand=Plus/Plus Query 274 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGAACCACTCACACT-CGGATG 332 |||||||||||||||||||||||||||||||||||||||| |||| |||| | | |||| Sbjct 296 CACAGAATCATTTCACATTGGAGCTGATACTCCAAGGTCGTACCATTCAC-GTACAGATG 354 Query 333 TTCCTAGCTTTGACAAAGTCTCTCCTGGCATGATAAATGAAATGTTTTACCATAGTAATG 392 | || |||||||| ||||| |||||||||||| |||||||||| |||||||| |||||| Sbjct 355 TCCCAAGCTTTGAAAAAGTTTCTCCTGGCATGCGAAATGAAATGGTTTACCATGGTAATG 414 Query 393 GTGTACCATCAGATTTTCAGAGGTCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 452 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 415 GTGTACCATCAGATTTTCAGAGATCATCTCTTTCTACCAGAAATCAATCATCACTGCAGC 474 Query 453 ATTATGGCGACCTCTATGCTGATGATTCAAGATATTTCGTTCCTTTTCACTTATCAAATC 512 |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| Sbjct 475 ATTATGGCGACCTCTATGCTGATGATTCAAGACATTTCGTTCCTTTTGACTTATTAAATG 534 Query 513 AGCAGTATCCAACCCCTGAAGATATTCATCTTTCTCCGGAGTTTCACATGTTTCAGGCGA 572 |||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 535 AGCAGTATCCAAACCCTGAACATATTCATCTTTCTCCGGAGTTTCACATGTTCCAGGCGA 594 Query 573 ACTCTAGACATTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGATTGATAATATGA 632 ||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||| Sbjct 595 ACTCTAGACGTTTTGATAGGCATGTGAATGAGAGAAACAGTAGTGAGACTGATTATGTGA 654 Query 633 TGCGCGCTAGGGGAAATTCTGTCTTAAGAGATAATATATATGGAGAACCTAGGGGTATGA 692 |||| ||||||||||||| || ||||||| || ||||||||||||||||||||||||||| Sbjct 655 TGCGAGCTAGGGGAAATTTTGGCTTAAGAAATGATATATATGGAGAACCTAGGGGTATGA 714 Query 693 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCATTGGCATCTACCAGACCATGTA 752 |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| Sbjct 715 ATCTCAACCCCTTCAGTGGAGAAAACATGTTTCCTCCAATGGCATCTACCGGAACATGTA 774 Query 753 TG-AGACACCTTGGTTCAGCAGAATTGCTGGCAAATGATTTTAATATGGGTCCAGCACAT 811 || || |||||||||||||||||||||| ||||||||| || |||||||||||||||||| Sbjct 775 TGAAG-CACCTTGGTTCAGCAGAATTGCCGGCAAATGACTTCAATATGGGTCCAGCACAT 833 Query 812 GGAGGTTTGCATGATGCTTTTGAATCTGCTGCAAACTTAAGTTACAGAGAGCAAGCATAT 871 |||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 834 GGAGTTTTGCACGATGCTTTTGAATCTGCTGCAAGCTTAAGTTACAGAGAGCAAGCTTAT 893 Query 872 -GCTCAATGCAAAAGAAGCCCTTTCTCTGCTTCTTCTTCTAGCCCAACTTGGGAGAATGA 930 | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 894 AG-TCAATGCAAAAAAAGCCCTTTCTCTGCTTCTTCTTCTATCCCAACTTGGGAGAATGA 952 Query 931 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGAAAGCTACAATGACTTCA-GCCACT 989 ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| Sbjct 953 TTATAACTTGCCACCACTTGATGAAGCAAGAAGTGGAAGCTACAATGACTT-ATGCCACT 1011 Query 990 GCCCTGCCATGCTTGATATGCTTACCGAGAGTAACAGAGGTCCGAGAGCATCCAGGCTAA 1049 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1012 ACCCTGCCATGCTTGATATGCTTACTGAGAGTAACAGAGGTCCGAGAGCATCGAGGCTAA 1071 Query 1050 ACAGTAAAAGTAAAATGATCTCTTATGATCGCGTTGATCGTTTTTGTCAGCAAGAATTGC 1109 |||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||| Sbjct 1072 ACAGTAAAAGTAAAATGATCACTTATGATCACGTTGATCG---TTGTCAACAAGAATTGC 1128 Query 1110 TCTCCCAATTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1169 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1129 TCTCCCAGTTCAGGGACGCAAAGTTCTTCGTTATTAAGTCATATAGCGAGGATAATGTCC 1188 Query 1170 ACAAGAGCATAAAGCATTGTGTTTGGGCAAGCACTAAAAATGGAAACAAAAAGTTGGATG 1229 |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1189 ACAAGAGCATAAAGTATTGTGTTTGGGCTAGCACTAAAAACGGAAACAAAAAGTTGGATG 1248 Query 1230 CTGCCTATCGTGAAGCAAAGAAAAAGGACGTGGCATGCCCAGTCTTTCTCTTGTTTTCGG 1289 |||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||| Sbjct 1249 CTGCCTATCGTGAAGCGAAGAAAAAAGAAGTGGCATGCCCAGTCTTTCTCTTATTTTCGG 1308 Query 1290 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1309 TAAATGCCAGTTCACAGTTTTGTGGAGTTGCTGAGATGGTTGGACCGGTTGACTTCAACA 1368 Query 1350 CAAGTGTAGAGTACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1409 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1369 CAAGTGTAGAATACTGGCAACAGGATAGATGGTCAGGACACTTCCCGGTCCAATGGCTTA 1428 Query 1410 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1429 TTGTCAAAGATGTTCCTAACAGTCTCTTTCGTCACATCATAATTGAAAGCAATGACAATA 1488 Query 1470 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAAAAAGGTATAGAGATGT 1529 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1489 AGCCTGTCACTAACAGTAGAGACACCCAAGAGGTGGGACTGGAACAAGGTATAGAAATGT 1548 Query 1530 TAGATATATTCATCAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1589 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1549 TAGATATATTCATTAGCTGTGAGATGCGTTCTTCGATCCTCGACGACTTTAACTTCTACG 1608 Query 1590 AAGAGCGACAGATAGCTATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAATCGC 1649 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1609 AAGAGCGACAGAGAGCGATCCAAGACAGAAAAGCCAGACAACGTGCTGTTCTTGAAGCGC 1668 Query 1650 TCGCACTTTCTGCAACCTCTGCTCC-A-ACAT-----AT-T-CTCTCCACGACGATTTTG 1700 ||||||||||||||||||||| ||| | |||| || | ||||||||||||| |||| Sbjct 1669 TCGCACTTTCTGCAACCTCTGTTCCGACACATCCCTCATATTCTCTCCACGACGAATTTG 1728 Query 1701 TAAGGGAAATGTCCAAGCACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1760 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1729 TAAGGGAAATGTCCAAGAACTTTGCAGAGGCTTTGGCCTTGCAACACAGACCCAAATAGA 1788 Query 1761 CCTCT-T-CTCTTTTAGGACTTGGGATTGGCTGAGGTTTAATTATGGTTT--T--TG--G 1812 ||||| | |||| |||||||||| ||||||||||||||||| |||||||| | | | Sbjct 1789 CCTCTCTTCTCTGTTAGGACTTGAGATTGGCTGAGGTTTAAATATGGTTTAATACTCTAG 1848 Query 1813 ATTTTGTACATTTGATAACGTACTTAAGGAGCATAGGTTGTAAGATAAAATTCAAGGTTC 1872 |||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||| Sbjct 1849 ATTTTGTACATTTGATCACGGACTTAAGAAGCATAGGTTGTAAGATAAA-TTCAAGGTTC 1907 Query 1873 TAAAAGTCGGTATCTACACCTTCTTGACT-A--T-TT-GAAAGTTTAGTTTTCGACC 1924 |||||||||||||||| ||| |||||||| | | || ||||||||||||| ||||| Sbjct 1908 TAAAAGTCGGTATCTAAACCATCTTGACTTAACTATTTGAAAGTTTAGTTTACGACC 1964 Score = 148 bits (80), Expect = 1e-34 Identities = 138/162 (85%), Gaps = 19/162 (12%) Strand=Plus/Plus Query 55 TTCCT-T-TC-AGTATCAAAGAGATTCTCGCTTT-TGTCTAACTTTATCGTCTCTCTTCC 110 ||||| | || ||| || ||||||||||| |||| | ||| ||||||||| |||| | Sbjct 28 TTCCTCTCTCAAGTCTC-AAGAGATTCTCACTTTGTCTCTTACTTTATCG--TCTC-T-- 81 Query 111 TTTTTGCCTCCGATTGGCTGATTTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 170 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 82 TTTTT--CTCCGATTGGCTGA-TTTTTCTATGGCCGCTTCTTACCGAAGCACCGACTGGT 138 Query 171 TTCCTCCTACTACTACTACTGGTTCATTTACGGGCCTAAATA 212 |||||||| | ||||| ||||||||||||||| |||||| Sbjct 139 TTCCTCCT-C--CTACT---GGTTCATTTACGGGCTTAAATA 174 Score = 76.8 bits (41), Expect = 5e-13 Identities = 43/44 (98%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 1 ACTCCCAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44 ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTCCAAAAATCCTCAAAATTCGACAATTCCTCTCTCAAGTCTC 44 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72523826480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5