BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27970.2
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472998 jgi|Araly1|472998|fgenesh2_kg.1__2952__AT1G27970.1 616 9e-176
Ahg921765 jgi|Araly1|921765|scaffold_103046.1 272 2e-72
Ahg925253 jgi|Araly1|925253|scaffold_200814.1 189 2e-47
> Ahg472998 jgi|Araly1|472998|fgenesh2_kg.1__2952__AT1G27970.1
Length=657
Score = 616 bits (333), Expect = 9e-176
Identities = 358/370 (97%), Gaps = 1/370 (0%)
Strand=Plus/Plus
Query 110 AATGTCTCAGATGGATCCCGACGCTGTATCTAAGGCCTTCGTCGAACATTACTATTCCAC 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AATGTCTCAGATGGATCCCGACGCTGTATCTAAGGCCTTCGTCGAACATTACTATTCCAC 123
Query 170 CTTCGACACCAACCGTGTCGGTCTCGCTGGTCTCTATCAGGAAGCTTCTATGCTCACCTT 229
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 124 CTTCGACACCAACCGCGTCGGTCTCGCTGGTCTCTACCAGGAAGCTTCTATGCTCACCTT 183
Query 230 CGAAGGTCAAAAGATCCAAGGAGTCCAGAGCATCGTCGCTAAGCTCACCTCTCTTCCTTT 289
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 184 CGAAGGTCAAAAGATCCAAGGAGTCCAAAGCATCGTCGCTAAGCTCACCTCTCTTCCCTT 243
Query 290 CCAGCAGTGCAAGCATCACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGG 349
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 244 CCAGCAGTGCAAGCATCACATCTCCACCGTCGATTGTCAGCCTTCTGGTCCCGCTTCCGG 303
Query 350 TATGCTCGTTTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTT 409
|||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||
Sbjct 304 TATGCTCGTTTTCGTCTCCGGTAACCTCCAGCTCGCCGGCGAAGAGCACACTCTCAAGTT 363
Query 410 CAGCCAGATGTTTCATTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATAT 469
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CAGCCAGATGTTTCACTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATAT 423
Query 470 ATTCAG-TTG 478
|||||| |||
Sbjct 424 ATTCAGGTTG 433
> Ahg921765 jgi|Araly1|921765|scaffold_103046.1
Length=412
Score = 272 bits (147), Expect = 2e-72
Identities = 298/369 (81%), Gaps = 18/369 (5%)
Strand=Plus/Plus
Query 118 AGATGGATCCCGACGCTGTAT-CTAAGGCCTTCGTCGAACATTACTATTCCACCTTCGAC 176
|||||||||| ||||| || | | ||||| ||||| || || ||||| |||||||||||
Sbjct 21 AGATGGATCCAGACGCAGT-TGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGAT 79
Query 177 ACCAACCGTGTC-GGTCTCGCTGGTCTCTATCAGGAAGCTTCTATGCTCACCTTCGAAGG 235
| || ||| | ||| | | | ||| || || |||| || ||| | |||||||||||
Sbjct 80 GCAAATCGT-CCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGACCTTCGAAGG 138
Query 236 TCAAAAGATCCAAGGAG-TC-CAGAGCATCGTCGCTAAGCTCACC-TCTCTTCCTTTCCA 292
|| ||||||| ||| | || |||| ||||||||||||||||||| | || ||||||||
Sbjct 139 CCAGAAGATCC-AGG-GCTCTCAGAACATCGTCGCTAAGCTCACCAGC-CTCCCTTTCCA 195
Query 293 GCAGTGCAAGCATC-ACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGGTA 351
|||||| ||||| | ||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 196 GCAGTGTAAGCA-CAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGCGGTA 254
Query 352 TGCTCGT-TTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTTC 410
||||||| ||| |||||||| ||||| |||||||| || ||| |||||||||||||||||
Sbjct 255 TGCTCGTCTTT-GTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGTTC 313
Query 411 AGCCAGATGTTTCATTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATATA 470
||||||||||| |||||||| ||| | | |||| || ||||||||||| ||||||
Sbjct 314 AGCCAGATGTTCCATTTGATATCGAATC-AG--GGAAACTACTACGTGTTCAATGATATA 370
Query 471 TTCAG-TTG 478
||||| |||
Sbjct 371 TTCAGGTTG 379
> Ahg925253 jgi|Araly1|925253|scaffold_200814.1
Length=317
Score = 189 bits (102), Expect = 2e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 294 CAGTGCAAGCATCACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGGTATG 353
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 42 CAGTGCAAGCATGACATCTCTACCGTTGATTGTCAGCCTTCTGGTCCCGCTTCCGGTATG 101
Query 354 CTCGTTTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTTCAGC 413
|| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 102 CTTGTTTTCGTCTCCGGTAATCTCCAGCTCGCCGGCGAAGAGCACGCTCTTAAGTTCAGC 161
Query 414 CAG 416
|||
Sbjct 162 CAG 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5