BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27980.1
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473000 jgi|Araly1|473000|fgenesh2_kg.1__2954__AT1G27980.1 2859 0.0
> Ahg473000 jgi|Araly1|473000|fgenesh2_kg.1__2954__AT1G27980.1
Length=1840
Score = 2859 bits (1548), Expect = 0.0
Identities = 1746/1842 (95%), Gaps = 11/1842 (1%)
Strand=Plus/Plus
Query 18 TGTCCCAAACGATTCAC-TTTTCTCACCATCTCAATCTCCAGACCAAAAGAAACAAAAAA 76
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct 1 TGTCCCAAACGATTCACTTTTTCTCACCATCTCAATCTCCAGAACAAAA-AAAAAAAAAA 59
Query 77 TGGATTCTTTTTCATATTCTTCGATGAAATCCATGTTGATTCAAGCTCGTGGCTCGTTGA 136
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 TGGATTCCTTTTCGTATTCTTCGATGAAATCCATGTTGATTCAAGCTCGTGGCTCGTTAA 119
Query 137 ACTCGCGTTTGTCGGAGTTTGAGCCACTGGTTCTGCTATTGGTTCCGCTTGTCTCTCTGT 196
||||||||||||| || |||||||| ||||||||||| |||||||||||| || | ||||
Sbjct 120 ACTCGCGTTTGTCCGAATTTGAGCCTCTGGTTCTGCTTTTGGTTCCGCTTCTCACCCTGT 179
Query 197 TTCTCGCTCAGATTATCGGATCTGTGTTTGGCGTTGTTCACGAGAAAGGCCTCAAAGCTT 256
|||||||||| || ||||||||||| || ||||||||||| || ||||| | ||||| |
Sbjct 180 TTCTCGCTCAAATGATCGGATCTGTCTTCGGCGTTGTTCATGATAAAGGTTTGAAAGCGT 239
Query 257 GTCTTATTGGGTTTATCATGGGACTCCTCAAAATGATTCCTGGAGTTCAGAATTACATTG 316
|| || | |||||| ||||||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 240 GTTTTGTCGGGTTTCTCATGGGTTTCCTCAAAATGATCCCTGGAGTTCAAAATTACATTG 299
Query 317 ATGCTGAGAAACAAAAGGTTGTTGACCAATTACAATCTGGTAGCAGCTCTAAGAAAAAGA 376
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 ATGCTGAGAAACAAAAGGTTGTTGATCAATTACAATCTGGTAGCAGCTCTAAGAAAAAGA 359
Query 377 ATAAGACTGAAGTATTGCCAGTAAAAGGTCTAGGAGTTGAAGTTTTAGAGAAAATGGAGA 436
|| |||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 360 ATCGGACTGAAGTATTGCCAGTTAAAGGTCTTGGAGTTGAAGTTCTAGAGAAAATGGAGA 419
Query 437 ATGAGAAGAGGAATGATGCTATTTGGCAAGGAAAATGCTCTGGCACTGTATACATAGGTG 496
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGAAAAGAAGAATGATGCTATTTGGCAAGGAAAATGCTCTGGCACTGTATACATAGGTG 479
Query 497 GAGCCGAGTCTGAAGGACATTTTTCATTGATAAATCAAGCATGTTCAATGTTTGCGCATA 556
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 480 GAGGCGAGTCTGCAGGACATTTTGCATTGATAAATCAAGCATGTTCAATGTTTGCACATA 539
Query 557 CCAATCCGTTGCATATAGACGTATTCCAGAGTGTGGTGCGGTTTGAGTCAGAAGTAGTCG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCAATCCGTTGCATATAGACGTATTCCAGAGTGTGGTGCGGTTTGAGTCAGAAGTAGTCG 599
Query 617 CAATGACTGCTGCGTTACTTGGGAGTAAAGAAACGGCGTCAGGAGGTCAAATATGCGGAA 676
||||||||||||| ||||| |||||||||||||| | |||||||| |||||||||||||
Sbjct 600 CAATGACTGCTGCATTACTGGGGAGTAAAGAAACTGTTTCAGGAGGACAAATATGCGGAA 659
Query 677 ACATGACGTCTGGAGGAACAGAAAGTATAGTGTTGGCTGTGAAGTCATCTCGTGACTATA 736
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACATGACATCTGGAGGAACAGAAAGTATAGTGTTGGCTGTGAAGTCATCTCGTGACTATA 719
Query 737 TGAAGTACAAGAAGGGAATCACACGGCCAGAAATGATTATACCTGAGTCGGGTCATTCGG 796
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 TGAAGTACAAGAAGGGAATCACACGGCCAGAAATGATTATACCTGAATCGGGTCATTCGG 779
Query 797 CTTATGATAAGGCGGCCCAGTATTTTAAAATCAAGTTGTGGCGAGTTCCAGTTGACAAAG 856
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 780 CTTATGATAAGGCGGCTCAGTATTTTAACATCAAGTTGTGGCGAGTTCCAGTAGACAAAG 839
Query 857 ACTTCCGAGCTGATGTGAAGGCAACAAGGCGGCATATTAACAGAAACACCATCATGATTG 916
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 ACTTTCGAGCTGATGTGAAGGCAACAAGGCGGCATATTAACAAAAACACCATCATGATTG 899
Query 917 TTGGATCAGCACCAGGATTCCCTCATGGCATCATTGATCCTATCGAGGAGCTTGGTCAAC 976
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 900 TTGGATCAGCACCAGGATTCCCTCATGGCATCATCGATCCTATCGAGGAGCTTGGTCAAC 959
Query 977 TGGCTCTTAGCTATGGAATATGCTTTCATGTTGACCTTTGCCTTGGTGGTTTTGTGTTAC 1036
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 TGGCTCTTAGCTATGGAATATGCTTTCATGTTGACCTTTGCCTTGGTGGGTTTGTGTTAC 1019
Query 1037 CTTTCGCTCGTAAACTTGGGTACCAGATCCCACCTTTTGATTTTTCTGTACAAGGAGTTA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CTTTCGCTCGTAAACTTGGGTACCAGATCCCACCTTTTGATTTTTCTGTACAAGGAGTTA 1079
Query 1097 CTTCAATTTCTGTGGACGTGCATAAATATGGTTTGGCTCCTAAAGGAACTAGTACAGTTC 1156
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTCAATTTCGGTGGATGTGCATAAATATGGTTTGGCTCCTAAAGGAACTAGTACAGTTC 1139
Query 1157 TATATAGAAATCATGAGATCAGAAAGCACCAATTTGTTGCTGTAACTGAATGGTCAGGAG 1216
| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 TCTACAGAAATCATGAGATCAGAAAGCACCAATTCGTTGCTGTAACTGAATGGTCAGGAG 1199
Query 1217 GTCTATACGTGTCTCCAACTATCGCTGGGAGTAGGCCTGGGTCTTTGGTAGCCGGTGCTT 1276
|||||||||||||||||||||| |||||||| |||||||| |||||||| || |||||||
Sbjct 1200 GTCTATACGTGTCTCCAACTATAGCTGGGAGCAGGCCTGGTTCTTTGGTTGCTGGTGCTT 1259
Query 1277 GGGCTGCAATGATGTCGCTCGGCGAAGAAGGTTACCTACAAAACACAAGTAAGATAATGG 1336
|||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1260 GGGCTGCAATGATGTCTCTTGGCGAAGAAGGCTACCTACAAAACACAAGCAAGATAATGG 1319
Query 1337 AAGCATCAAAGAGACTAGAAGAAGGAGTAAGAGAAATCCATGAACTATTCGTCATTGGAA 1396
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAGCATCAAAGAGACTAGAGGAAGGAGTAAGAGAAATCCATGAACTATTCGTCATTGGAA 1379
Query 1397 AGCCAGATATGACAATCGTGGCTTTTGGTTCTAAAGCATTGGATATATTTGAAGTTAATG 1456
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGCCAGATATGACAATTGTGGCGTTTGGTTCTAAAGCATTGGATATATTTGAAGTTAATG 1439
Query 1457 ACATCATGTCTTCTAAAGGTTGGCATTTGAATGCACTACAGAGACCCAACAGCATTCATA 1516
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 ACATCATGTCTTCAAAAGGTTGGCATTTGAATGCACTACAGAGACCCAACAGCATTCATA 1499
Query 1517 TATGTATTACTCTTCAACACGTCCCTGTAGTCGATGACTTCCTTCGGGATCTGCGTGAAG 1576
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TATGTGTAACTCTTCAACACGTCCCTGTAGTCGATGACTTCCTTCGGGATCTGCGTGAAG 1559
Query 1577 CTGTGGAAACTGTAAAAGCAAACCCAGGACCGATCACGGGAGGCTTGGCTCCAATATATG 1636
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1560 CTGTAGAAACTGTAAAAGCAAACCCAGGACCGATCACTGGAGGCTTGGCTCCAATATATG 1619
Query 1637 GAGCAGCAGGGAAGATGCCAGACCGAGGCATGGTGAATGAGCTTCTGGTTAGTTTCATGG 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GAGCAGCAGGGAAGATGCCAGACCGAGGCATGGTGAATGAGCTTCTGGTTAGTTTCATGG 1679
Query 1697 ACAGTCAATATTAAGTTTCTTG---AAGGTTAAAGCATC-T-A-GTGGGTAAATTGATAT 1750
||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||
Sbjct 1680 ACAGTCAATATTAAGTTTCTTTTTTAAGGTTAAAGCATCATCAAGTGGGTAAATTGATAT 1739
Query 1751 CACATTT-CAGTTGGA-GAAGCAAAACTTTGTATATTCACAACCACATTGTTTCGTTTGC 1808
||||||| |||||| | || ||||||||||||| |||||||||||||||||||| |||||
Sbjct 1740 CACATTTTCAGTTGCAAGA-GCAAAACTTTGTACATTCACAACCACATTGTTTCTTTTGC 1798
Query 1809 CCTACTAATAAAATTTCATTACAATCTTCATAATAAACAACT 1850
||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1799 CCTACTAATAAAATTTCATTACAATCTCCATAATAAGCAACT 1840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69895599575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5