BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G27990.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473001 jgi|Araly1|473001|fgenesh2_kg.1__2955__AT1G27990.1 1303 0.0
> Ahg473001 jgi|Araly1|473001|fgenesh2_kg.1__2955__AT1G27990.1
Length=846
Score = 1303 bits (705), Expect = 0.0
Identities = 801/848 (94%), Gaps = 4/848 (0%)
Strand=Plus/Plus
Query 4 TCAACTACATTCTTATCCATTTGAATCATCATGTCAGGCGTGTCTCTTGCGGTTGGTCCA 63
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAACTTCATTCTTATCCGTTTGAATCATCATGTCAGGCGTGTCTCTTGCGGTTGGTCCA 60
Query 64 AGAACCGACGTGGACAAAACGGCGTCATCCAGTGAGAAGGGACGGTGGTCGGGGATGACG 123
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAACGACGTGGACAAAACGGCTTCATCCAGTGAGAAGGGACGGTGGTCGGGGATGACG 120
Query 124 GCGATAGGAGGTGGCAGTGGAGGTTTGATGGGGTCGTTAAGGGTTATAGAGCTACAGCTA 183
|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 121 GCGATAGGAGGTGGCAGTGGCGGTTTGATGGGGTCGCTGAGGGTTATAGAGCTACAGCTA 180
Query 184 GTCGCGTTCATACTAGTTTTCTCAGCAAGCGGTCTCGTACCAATACTTGACATGCTTTTT 243
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 181 GTCGCGTTCATACTAGTCTTCTCAGCGAGCGGTCTCGTACCGATACTTGACATGCTTTTT 240
Query 244 CCAGCGTTTGCGTCTATCTATATAATCGCCCTCTCGCGTTTAGCTTTCCCTTCTCACGGC 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCAGCGTTTGCGTCTGTCTATATAATCGCCCTCTCGCGTTTAGCTTTCCCTTCTCACGGC 300
Query 304 GTTTCCACCGCTTCCCCCGAAGTCTTCCGCGGCAGCAAACTCTTCAGGTTGTACGTGATT 363
||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 301 GTTTCCACCTCTTCCCCTGAAATCTTCCGCGGCAGCAAACTCTTCAGGATGTACGTGATT 360
Query 364 TCGGGGACAACGATTGGTCTGTTCTTGCCTCTAGCTTACGTATTAGGTGGTTTTGCAAGA 423
||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||
Sbjct 361 TCGGGGACAACGATTGGTCTGTTTTTGCCTTTAGCTTACGTGTTAGGTGGTTTCGCAAGA 420
Query 424 GGAGATGATCATGCGGTAAGATCAGCAACACCACACTTGTTTCTACTGTCGTGTCAAATC 483
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GGAGACGATCAAGCGGTAAGATCAGCAACACCACACTTGTTTCTACTGTCGTGCCAAATC 480
Query 484 CTGACAGAGAATGTAATAAGTGGCCTTTCTCTGTTCTCGCCACCGGTAAGAGCTCTCGTC 543
|||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 CTGACAGAAAATGTAATTAGTGGCCTTTCTCTCTTCTCGCCACCGGTAAGAGCTCTCGTG 540
Query 544 CCATTGCTCTACACAGTCTGGAGAATCTTTGTCATCATTGGTTGGTCTAAAGATGTTTGG 603
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 CCACTGCTCTACACAGTCTGGAGAATCTTTGTCATCATTGGTTGGTCTAAAGATGTCTGG 600
Query 604 TTCAACAAGTCTTTACCAATCAATGCTACACCCAATGTGGTTACATGGTTCTGGTTTGGA 663
|||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 601 CTCAATAAGTCTTTACCAATTAATGCTACACCCAATGTGGTTGCGTGGTTCTGGTTTGGA 660
Query 664 AGGTATTTAGCACTAGCAAACTTAGGCTACTTCGGAGTGAATCTACTCTGTTTCTTGATC 723
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGGTATTTAGCAATAGCAAACTTAGGCTACTTCGGAGTGAATCTACTCTGTTTCTTGATC 720
Query 724 CCTAGGTTCCTGCCTCGTGCTTTCGAGCAAT--ACTTCAGAGAGAGAGACGAGATCTTGG 781
||||||||||||||||||||||| || ||| |||||||||| |||||||||||| ||
Sbjct 721 CCTAGGTTCCTGCCTCGTGCTTTTGA--AATCTACTTCAGAGAAAGAGACGAGATCATGT 778
Query 782 CGAAAAGCCAAGAAGACAAGCCAGTTCAAGTTCCTAGATCAAAACCTTCTAACCACAAAT 841
|||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 779 CGAAAAGCGAAGAAGACAAGCCGGTTCAAGTACCTAGATCAAAACCTTCTGACCACAAAT 838
Query 842 CTGATTGA 849
||||||||
Sbjct 839 CTGATTGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5