BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28020.1
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912628 jgi|Araly1|912628|Al_scaffold_0001_2882 2508 0.0
Ahg313509 jgi|Araly1|313509|fgenesh1_pm.C_scaffold_1002289 139 6e-32
> Ahg912628 jgi|Araly1|912628|Al_scaffold_0001_2882
Length=2004
Score = 2508 bits (1358), Expect = 0.0
Identities = 1678/1829 (92%), Gaps = 36/1829 (2%)
Strand=Plus/Plus
Query 1 ATGGTATCATCTTTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACCGTACGGTGCA 60
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1 ATGGTATCATCTGTCCCATTTGTTTATCGGAATATGCTAGCAAAGAGACTGTACGGTGCA 60
Query 61 TACCAGAATGTGATCACTGTTTCCATGTCGTGGCTCAAGATTCATGGTTCATGTCCGCAT 120
||||||||||||||||||||||||| ||| | | | | | |||
Sbjct 61 TACCAGAATGTGATCACTGTTTCCA---CGT---T---G----A------A--T---CAT 96
Query 121 CGTATCACAGATGCTCTCCATCGAAATGCACAAATCATTCCGGTGCTAGAACAGTGGCGG 180
|||||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct 97 CGTATCACGGATGCTCTCCATCGGAATGCACAAATCATTCCAGTGCTAGAGCAATGGCGG 156
Query 181 CAACAGGGGAATCAAGTGAACCCTTCGCACGTGAGAGTCATCATCAAAAAGCTTCGTGAT 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CAGCAGGGTAATCAAGTGAACCCTTCGCACGTGAGAGTCATCATCAAAAAGCTTCGTGAT 216
Query 241 TCCGACCAATCTCTCCAAGCCCTTCAGGTATCAGAGTGGATGAGTAAAGAAAAAATCTGC 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 217 TCTGACCAATCTCTCCAAGCCCTTCAGGTATCAGAGTGGATGAGTAAAGAAAAGATTTGC 276
Query 301 AATCTAATCCCAGAAGATTTTGCAGCTCGGCTTCATCTGATAGAGAATGTTGTAGGGTTA 360
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 277 AATCTAATTCCAGAAGATTTTGCAGCTCGGCTTCATCTTATAGAGAATGTTGTAGGTTTA 336
Query 361 GAAGAAGCAGAGAAGTTCTTTGAAAGTATTCCAAAGAACGCAAGAGGCGATTCTGTTTAC 420
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 337 GAAGAAGCAGAGAAGTTCTTCGAAAGTATTCCAAAGAACGCAAGAGACGATTCTGTTTAC 396
Query 421 ACCTCTCTCTTAAACTCGTACGCAAGATCAGACAAAACTCTGTGTAAAGCCGAAGCCACG 480
||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 397 ACCACTCTCTTAAACTGGTATGCAAGATCAGACAAAACTCTGTGTAAAGCCGAAGCCACG 456
Query 481 TTCCAGAAAATGAGGGACTTAGGTCTTCTCTTAAGACCTGT-TCCTTACAACGCAATGAT 539
|||||||| |||||||| |||||||| |||| |||||| | ||||||||||||||||||
Sbjct 457 TTCCAGAAGATGAGGGAGTTAGGTCTCCTCTCGAGACCT-TCTCCTTACAACGCAATGAT 515
Query 540 GTCTCTCTACAGTGCACTAAAAAATCGTGAAAAAGTCGAGGAGCTTTTGCTTGAGATGAA 599
||||||||||| ||||||||| |||| |||||||| || |||||||||| |||||||||
Sbjct 516 GTCTCTCTACATTGCACTAAATGATCGAGAAAAAGTGGAAGAGCTTTTGCGTGAGATGAA 575
Query 600 AGATAACGACGTGGAGGCGGATAATGTCACAGTGAACAACGTGTTGAAGCTATACTCGGC 659
|||||| ||||||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct 576 AGATAATGACGTGGAGGCCGATAGTATCACAGTAAACAACGTGTTGAAGCTATACTCGGC 635
Query 660 TGTGTGTGACGTGACCGAGATGGAGAAGTTTTTGAATAAGTGGGAAGGGATTCATGGGAT 719
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 636 TGTGTGTGACGTGACCGCGATGGAGAAGTTTTTGAATAAGTGGGAAGGGATTAATGGGAT 695
Query 720 CAAACTTGAGTGGCATACGACTCTTGACATGGCAAAGGCTTACCTGCGAGCCCGTTCAAG 779
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CAAACTTGAGTGGCTTACGACTCTTGACATGGCAAAGGCTTACCTGCGAGCCCGTTCAAA 755
Query 780 TGGAAAGGCAATGAAAATGCTGCGTTTAACAGAGCAATTGGTGGATCAG-AAGTCGTTAA 838
||||||||| || ||||||||||||||||||||| |||||| ||||| | |||||| |||
Sbjct 756 TGGAAAGGCTATCAAAATGCTGCGTTTAACAGAGGAATTGGCGGATC-GTAAGTCGCTAA 814
Query 839 AATCAGCTTACGACCATCTTATGAAGCTGTATGGTGAAGCTGGAAACAGAGAAGAGGTTT 898
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 815 AATCAGCTTACGACCATCTCATGAAGCTGTATGGTGAAGCTGGAAACAGAGAAGAGGTTG 874
Query 899 TACGTGTATGGAAACTTTACAAGAGT-AAGATAGGAGAACGTGATAACAATGGTTACCGA 957
||||| ||||||| |||||||||| | || |||||| ||||||||||||| |||||||||
Sbjct 875 TACGTATATGGAACCTTTACAAGA-TGAACATAGGACAACGTGATAACAAGGGTTACCGA 933
Query 958 ACAGTGATTCGTTCGCTTTTGAAAGTAGATGATATCGTTGGAGCAGAAGAGATCTACAAA 1017
|| ||||| ||||| || ||||| ||||| ||||| |||| ||||||||||| ||||||
Sbjct 934 ACTGTGATCCGTTCTCTCTTGAAGGTAGACGATATTTTTGGGGCAGAAGAGATATACAAA 993
Query 1018 GTGTGGGAATCTTTGCCACTTGAGTTTGATCAT-CGAATCCCGACAATGTTGGCCTCTGG 1076
||||||||||| ||| |||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 994 GTGTGGGAATCGTTGTCACTTGAGTTTGAT-ATCCGAATCCCGACTATGTTGGCCTCTGG 1052
Query 1077 TTATCGAGACAGAGGAATGACAGAGAAGGCTGAGAAACTCATGAACAGTAAAACCATTAA 1136
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1053 TTATCGAGAGAGAGGAATGACAGAGAAGGCTGAGAAACTCATAAACAGTAAAACCATTAA 1112
Query 1137 GGACAGAAGAATGAATAAACCCGTCACTCCGCTTCTGGAGCAATGGGGAGATCAAATGAA 1196
|||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1113 GGACAGAAAAATGAATAAGCCCGTCACTCCGCTTTTGGAGCAATGGGGAGATCAAATGAA 1172
Query 1197 ACCGTCTGATCTCAAATGCCTCATCAAGAATCTCCGTGATTCCAAACAGTTCTCAAAAGC 1256
|||||||||||| |||||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 1173 ACCGTCTGATCTTAAATGCCTTATCAAGAATCTCCGTGATTCCAATCAGTTTTCTAAAGC 1232
Query 1257 CCTTCAGGTTTCCGAATGGATGGGTGAAAAACAAGTTTGTAATCTTTATTTGGAAGATTA 1316
||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 1233 ACTTCAGGTTTCCGAATGGATGGGTGAAAAACGGGTTTGTGATCTTTATTCGGAAGATTA 1292
Query 1317 TGCAGCTAGGCTTTACCTGACTGAGAATGTTTTGGGTTTGGAAGAAGCAGAGAAGTACTT 1376
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1293 TGCAGCTAGGCTTTACCTGACTGAGAATGTGTTGGGTTTGGAAAAAGCAGAGAAGTACTT 1352
Query 1377 TGAAAACATCCCTGAGAACATGAAGGATTACTCTGTCTACGTAGCTCTCTTAAGCTCTTA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 TGAAAACATCCCTGAGAACATGAAGGATTACTCTGTCTACGTAGCTCTCTTAAGCTCTTA 1412
Query 1437 CGCGAAATCCGATAAAAACTTGGGAAACATGGTGGATGAGATTCTTCGTGAGATGGAGGA 1496
||||||||| || ||||| |||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1413 CGCGAAATCTGACAAAAATTTGGAAAATATGGTGGAGGAGATTCTTCGTGAGATGGAGGA 1472
Query 1497 GAACAACGTGGATCCTGATCTTATCACGGTCAACCATGTTTTAAAGGTGTACGCGGCAGA 1556
||||||||||||||||||| ||||||||| ||| ||||||||||||| |||||||| |
Sbjct 1473 GAACAACGTGGATCCTGATAGTATCACGGTGAACTATGTTTTAAAGGTATACGCGGCTGC 1532
Query 1557 ATCAAAGATACAAGCAATGGAAATGTTTATGAGACGTTGGGCGGTAGAGGTGTATGGTGA 1616
||||||| || |||||||||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 1533 ATCAAAGGTAGAAGCAATGGAAATGTTTATGAGACATTGGGCGGTAGAGATGTATGGTAA 1592
Query 1617 TGTGGCACGGT-GTAAAAGAGAGGTGCACAATCTTTGGGACGAATGTAAGAATAACAAGG 1675
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1593 TGTGGCA-GGTTGTAAAAGAGAGGTGCACAATCTTTGGGAAGAATGTAAGAATAAGAAGG 1651
Query 1676 AAGAAGAAGTGGAGGATGGTAAAAAACGTTTACCTGTGGTTA-CAACTTTGTTGAAGATG 1734
||||| |||||| ||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 1652 AAGAAAAAGTGGGGGATGGTAAGGAATGTTTAAATGTGGTTAGCA-CTTTGTTGAAGATG 1710
Query 1735 GACGATGATGGATATCGAACTGTGATTAGTTCTTTGTTGAAGCTGGACGATGTACAAGGA 1794
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1711 GACGATGATGGATATCGAACTGTGATTAGCTCTTTGTTGAAGCTGGATGATGTACAAGGA 1770
Query 1795 GTAGAGAAGGTATACGGAGAGTGGAAACC 1823
| |||||||||||| ||||||||||||||
Sbjct 1771 GCAGAGAAGGTATATGGAGAGTGGAAACC 1799
> Ahg313509 jgi|Araly1|313509|fgenesh1_pm.C_scaffold_1002289
Length=975
Score = 139 bits (75), Expect = 6e-32
Identities = 85/90 (94%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1 ATGGTATCATCTTTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACCGTACGGTGCA 60
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 821 ATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACTGTACGGTGCA 880
Query 61 TACCAGAATGTGATCACTGTTTCCATGTCG 90
| ||||||||||| ||||||||||| ||||
Sbjct 881 TGCCAGAATGTGAACACTGTTTCCACGTCG 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5