BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28040.1
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313509 jgi|Araly1|313509|fgenesh1_pm.C_scaffold_1002289 542 3e-153
Ahg483804 jgi|Araly1|483804|fgenesh2_kg.4__2864__AT2G46495.1 351 6e-96
Ahg912628 jgi|Araly1|912628|Al_scaffold_0001_2882 152 7e-36
> Ahg313509 jgi|Araly1|313509|fgenesh1_pm.C_scaffold_1002289
Length=975
Score = 542 bits (293), Expect = 3e-153
Identities = 471/553 (85%), Gaps = 28/553 (5%)
Strand=Plus/Plus
Query 520 AGGATTCAATCTCCACTGCAACAACCTCGATAAGACAGTCCTAGAGCTTCCTATGTCCGG 579
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 75 AGGATTCAATCTCCACTGCAACAACCTCAATAAGACAGTCCTAGAGCTTCCTATGTCCGG 134
Query 580 AACATTTCTTGTCGAT-GAAATCAACTAC-CAAAAGCAGCAGATTTCTATCAGCGACCCT 637
|||||||||||| ||| ||| || ||||| |||| |||||| ||||||||||||||||||
Sbjct 135 AACATTTCTTGTTGATAGAA-TCGACTACTCAAA-GCAGCAAATTTCTATCAGCGACCCT 192
Query 638 GAAAACTGTATGGTTAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTTAT 697
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 193 GAAGACTGTATGGTCAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTAAT 252
Query 698 GGCTTCAGT--T-TCTACTACACGTTCTTGACCTGTCCGAATGAGGTCGTGATACCGGT- 753
||||| ||| | |||| |||||||||||||||||||||||||||||||||| | | |
Sbjct 253 GGCTTGAGTACTGTCTATTACACGTTCTTGACCTGTCCGAATGAGGTCGTGAGGCTG-TC 311
Query 754 TTGGTCTCTGATGTCCATCCCTTGCCTAAGCAATTCTACCTCCTCCTTCTTCGCCACGTC 813
||||| || | | | |||| |||||||||||||||||||||| ||||||| |||||||
Sbjct 312 TTGGTATCCGC-G-C-ATCCGTTGCCTAAGCAATTCTACCTCCACCTTCTTTTCCACGTC 368
Query 814 TAATTTGACTTTTTCAAAATTGT-TGCCGCCTTCTTGTCAGATTGTGAA-AGGACTATAC 871
|||| || | || |||| || ||| ||||||||| ||||| ||||| || |||| |
Sbjct 369 TAATATGTCACTTGCAAA-TTCAATGCTGCCTTCTTGCCAGATCGTGAAGAG-ACTAG-C 425
Query 872 -GTTCCTGTT-GATGTGATATAT-AAAGATGTGATAACTGAAGAAAAAGGGTTCTCTACA 928
||||| || | ||| | ||| ||| ||||| ||||| | || ||||| |||||| |
Sbjct 426 TGTTCCGGTAAGC-GTGTTTTATGAAA-ATGTGCTAACTCATGAGAAAGGATTCTCTG-A 482
Query 929 GTGCC-CTGGCT-TGGAAACGTCTTGTTGGAATGGAGCTCGCCGAATTGCA-GAGGTTGT 985
|| | || || |||| | ||| |||||||||||||||| ||||||| | ||||||
Sbjct 483 TTGGATCAA-CTATGTAAACCTTTTGCTGGAATGGAGCTCGCCAAATTGCACG-GGTTGT 540
Query 986 GAAAAGGAGTCCTTGAGATGTGGTTTCAAGAACAAGGCCTCCCTCGAAGTCAAATACTTG 1045
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GAAAAGAAGTCCTTGAGATGTGGTTTCAAGAACAAGGCCTCCCTCGAAGTCAAATGCTTC 600
Query 1046 GCTGATCCACCCG 1058
|||||||||||||
Sbjct 601 GCTGATCCACCCG 613
Score = 462 bits (250), Expect = 3e-129
Identities = 319/351 (91%), Gaps = 9/351 (3%)
Strand=Plus/Plus
Query 1124 ACTTGTATTGCTGCTAT-CCGCATTTACAATTCCGAGAGGTTTGTCAATCAGAGAAGACA 1182
|||||||||| | ||| || ||||| |||||| |||||||||||| ||||||||||||
Sbjct 631 ACTTGTATTG-T--TATGCC-CATTTGCAATTCAGAGAGGTTTGTCTTTCAGAGAAGACA 686
Query 1183 AAATGCAGCTATTACAGCCAGAAACAC-AACGCAACAACCACGAGGGGTTGTGGTCACTA 1241
|||||| ||||| ||| || | | | |||||| || ||| |||||| |||||||||||
Sbjct 687 AAATGCTGCTATCGCAGACA-CAGCCCTAACGCAGCAGCCAAGAGGGGATGTGGTCACTA 745
Query 1242 CAGGTCTTGACCAATCTACAATAGAATCATACAAGAAAGTGGAGTTGGGAGAAAGTAGAA 1301
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 746 CAGGTCTTGACCAGTCTACAATAGAGTCATACAAGAAAGTGGAGTTAGGAGAAAGTAGAA 805
Query 1302 GGCTTCCAGGTACTAATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAG 1361
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GGCTTCCGGGTACTAATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAG 865
Query 1362 AGACTGTACGGTGCATGCCAGAATGTGATCACTGTTTCCACGTCCAATGTATCGATG-AG 1420
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 866 AGACTGTACGGTGCATGCCAGAATGTGAACACTGTTTCCACGTCGAATGTATCGATGCA- 924
Query 1421 TGGCTCAAGATTCATAGTTCATGTCCTGTTTGTCGCAACTCACGCTCGTAA 1471
|||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 925 TGGCTCAAGATTCATAATTCATGTCCTGTTTGTCGTAACTCACGCTCGTAA 975
> Ahg483804 jgi|Araly1|483804|fgenesh2_kg.4__2864__AT2G46495.1
Length=1980
Score = 351 bits (190), Expect = 6e-96
Identities = 330/396 (83%), Gaps = 15/396 (4%)
Strand=Plus/Plus
Query 472 ATGTGAACCACTTGGA-ATCCCCATTCGTTTTCCTTTCTGCGGCAATCCAGGATTCAATC 530
||||| ||| ||| || |||||||||||||||||||||| | | || || |||||| |
Sbjct 1011 ATGTGGACC-CTTAGATGTCCCCATTCGTTTTCCTTTCTGTGACCATGCACAATTCAACC 1069
Query 531 TCCACTGCAACAACCTCGATAAGACAGTCCTAGAGCTTCCTATGTCCGGAACATTTCTTG 590
||||||| | | | ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1070 TCCACTGTACCGATCTCAATAAGACAGTCCTAGAACTTCCTATGTCCGGAACATTTCTTG 1129
Query 591 TCGATGAAATCAACTACCAAAAG-CAGCAGATTTCTATCAGCGACCCTGAAAACTGTATG 649
|| |||| ||| ||||| | ||| || |||||| ||||| |||||||||||||||| ||
Sbjct 1130 TCCATGATATCGACTAC-AGAAGGCAAAAGATTTATATCAACGACCCTGAAAACTGTTTG 1188
Query 650 GTTAAAAGGCTTTTAACCTTCAATACTTCAGGATCTCCTTTCTCTTATGGCTTC-AGTTT 708
| |||| |||||||||||||||||| ||||||||||||||||||| | ||||| || |
Sbjct 1189 GCTAAACGGCTTTTAACCTTCAATATTTCAGGATCTCCTTTCTCTCCTCGCTTCGAGAT- 1247
Query 709 CTACTACACGTTCTTGACCTGTCCGAATGAGGTCGTGATACCGGT-TTGGTCTCTGATGT 767
|| |||||| |||||||| ||||| |||||||||||| | ||| | ||||| || | |
Sbjct 1248 CTTCTACACATTCTTGACTTGTCCTAATGAGGTCGTGTTGCCG-TCTTGGTATCCG-T-- 1303
Query 768 CCATCCCTTGCCTAAGCAATTCTACCTCCTCCTTCTTCGCCACGTCTAATTT-GACTTTT 826
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| | || |
Sbjct 1304 CCATTCCTTGCCTAAGCAATTCCACCTCCTCCTTCTTCGCCACGTCTAATTTTG-CTCTC 1362
Query 827 TCAAAAT-TGTTGCCGCCTTCTTGTCAGATTGTGAA 861
|| | | | | || |||||||||||||| |||||
Sbjct 1363 GCACAGTCTAT-GCTACCTTCTTGTCAGATCGTGAA 1397
> Ahg912628 jgi|Araly1|912628|Al_scaffold_0001_2882
Length=2004
Score = 152 bits (82), Expect = 7e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1317 ATGGTATCATCTGTCCCATTTGTTTATCAGAATATGCTAGCAAAGAGACTGTACGGTGCA 1376
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGTATCATCTGTCCCATTTGTTTATCGGAATATGCTAGCAAAGAGACTGTACGGTGCA 60
Query 1377 TGCCAGAATGTGATCACTGTTTCCACGT 1404
| ||||||||||||||||||||||||||
Sbjct 61 TACCAGAATGTGATCACTGTTTCCACGT 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55040404025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5