BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28050.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473005 jgi|Araly1|473005|fgenesh2_kg.1__2959__AT1G28050.1 2161 0.0
Ahg321080 jgi|Araly1|321080|fgenesh1_pm.C_scaffold_4001137 292 4e-78
> Ahg473005 jgi|Araly1|473005|fgenesh2_kg.1__2959__AT1G28050.1
Length=1656
Score = 2161 bits (1170), Expect = 0.0
Identities = 1523/1683 (90%), Gaps = 65/1683 (4%)
Strand=Plus/Plus
Query 23 aaaaaaaaaaaGAGTTCAAAATGAAAAACGTGAGAAATGGATTTGTCATCATTC-TTCTC 81
||||||||||| | | | ||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 29 AAAAAAAAAAAAAATCCGAAATGGAAAACGTGAGTAATGGATTTGTCATCATTCATTCTC 88
Query 82 ACCGTCCTTAGTCTCTGAAAATAAATTCTGATTTTGATTTCGAATTTTAGGGATTTTGAG 141
|||||||||| |||||| ||| | ||||||||| | ||||| |
Sbjct 89 ACCGTCCTTAATCTCTG-----AAA----G---TTGATTTCG------A---ATTTT--G 125
Query 142 AGAGAGTCAGTTATGAG-TAGTTCGGAGAGAGTACCGTGCGATTTCTGCGGCGAGCGTAC 200
|| || ||||||| | ||||||| ||||||||||||||||||||||||||||| | ||
Sbjct 126 AG-GA---AGTTATG-GCTAGTTCGAAGAGAGTACCGTGCGATTTCTGCGGCGAGAGAAC 180
Query 201 GGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATCAGCAAGT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATCAGCACGT 240
Query 261 TCACACGGCGAATCTGTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGCGG 320
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 GCACACGGCGAATCTCTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGTGG 300
Query 321 TAACGAGCCAGTCTCTGTTCGGTGTTTCACCGATAATCTGATTTTGTGTCAGGAGTGTGA 380
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 301 CAACGAGCCAGTCTCTGTTCGGTGCTTCACCGATAATCTCATTTTGTGTCAGGAGTGTGA 360
Query 381 TTGGGATGTTCACGGAAGTTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTGGAAGG 440
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 TTGGGATGTTCACGGAAGCTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTCGAAGG 420
Query 441 TTTTTCCGGTTGTCCATCGGCGTTGGAGCTTGCTGCTTTATGGGGACTTGATTTGGAGCA 500
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 421 TTTTTCCGGTTGTCCATCGGCGTTGGAGCTTGCTGCTTTGTGGGGACTTGATTTGGAACA 480
Query 501 AGGGAGGAAAGATGAAGAGAATCAAGTTCCGATGATGGCGATGATGATGGATAATTTCGG 560
|||||||||||| ||||||| ||||||||||||||||||| |||||||||| ||||| ||
Sbjct 481 AGGGAGGAAAGAAGAAGAGAGTCAAGTTCCGATGATGGCGTTGATGATGGAGAATTTTGG 540
Query 561 GATGCAGTTGGATTCTTGGGTTTTGGGATCTAATGAATTGATTGTTCCCAGCGATACGAC 620
||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 541 GATGCAGTTGGATTCTTGGGTTTCGGGATCTAACGAATTGATTGTTCCCAGTGATACGAT 600
Query 621 GTTTAAGAAGCGTGGATCTTGTGGATCTAGTTGTGGGAGGTATAAGCAGGTATTGTGTAA 680
||||||||| | | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 GTTTAAGAA------A-C--GTGGATCTAGTTGTGGGAGGTATAAGCAGGTGTTGTGTAA 651
Query 681 GCAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTCGGTGGTGATGGCGATGATGGTGATCG 740
|||||||||||||||||||||||||||||||| |||||||| | || ||||||||| |
Sbjct 652 ACAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTTGGTGGTGACGATGAAGATGGTGATGG 711
Query 741 TGACCGTGATTGTGACCGTGAGGGTGCTTGTGATGGAGATGGAGATGGAGAAGCAGGAGA 800
||| ||||| ||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 712 TGATCGTGACCGTGACTGTGACCGTGAGGGTGATGGAGATGGAGATGGAGAAGCAGGAGA 771
Query 801 GGGGCTTATGGTTCCGGAGATGTCAGAGAGATTGAAATGGTCAAGAGATGTTGAGGAGAT 860
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 772 GGGGCTTATGGTTCCGGAGATGTCGGAGAGATTGGAATGGTCAAGAGATGTTGAGGAGAT 831
Query 861 CAATGGTGGCGGAGGAG--GAGGAGTTAACC--AGCAGTGGAATGCTACTACTACTAATC 916
||| || |||||||| | || | || ||||||||||| ||||||||||||
Sbjct 832 CAA---TGCCGGAGGAGTTAAACAG-CAGCCTTTGCAGTGGAATG---CTACTACTAATC 884
Query 917 CTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAACTTGGGACAGTCACGGGGACCTG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 CTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAACTTGGGACAGTCACGGGGACCTG 944
Query 977 AGGATACGAGTCGAGTGGAAGCTGCATATGTAGGGAAAGGTGCTGCTTCTTCATTCACAA 1036
|||| || |||||| | ||||||||||||||| ||||||||||| ||||||||||||
Sbjct 945 AGGACACTAGTCGAATAGAAGCTGCATATGTAACGAAAGGTGCTG---CTTCATTCACAA 1001
Query 1037 TCAACAATTTTGTTGACCATATGAATGAAACTTGTTCCACTAATGTGAAAGGTGTCAAAG 1096
||||||| ||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1002 TCAACAACTTTGTTGACCATATGAATGAAACTTGTTCCACTAACGCCAAAGGTGTTAAGG 1061
Query 1097 AGATTAAAAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAACCAACAAAATCTG 1156
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1062 GGATTTGCAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAATCAACAAAATCTG 1121
Query 1157 AGAGCAACAATCGTCCAATTACCTTTGGCTCTGAGAAAGGTTCGAACTCCTCCAGTGACT 1216
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1122 AGAGCAACAATCTTCCAATTACCTTTGGCTCCGAGAAAGGTTCGAACTCCTCCAGTGACT 1181
Query 1217 TGCATTTCACAGAGCATATTGCTGGAACTAGTTGTAAGACCACAAGACTAGTTGCAACTA 1276
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1182 TGCATTTCACGGAGCATATTGCTGGAACTAGTTGTAAGACCACAAGACTAGTGGCAACTA 1241
Query 1277 AGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGG-AGATGCAATGCAGCGTTACAAGGAA 1335
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1242 AGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGGCA-ACGCAATGCAGCGTTACAAGGAA 1300
Query 1336 AAGAGGAAGACACGGAGATATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCT 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 AAGAGGAAGACACGGAGATATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCT 1360
Query 1396 GACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCTTAA 1455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCTTAA 1420
Query 1456 CCTTAAGTCTCTTCACATAGGCTTCCTTTTAGCTACAAACTTAGTTACtttttttACTTC 1515
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||
Sbjct 1421 ------GTCTCTTCACATAGTTTTCCTTTTAGCTACAAAGTTAGTTACTTTTTCTACTTC 1474
Query 1516 CACTGCCTCATAAATGTACAGACCGGTCTCGTTTCATCTGGCCGCCCTT--CTGTTTTAT 1573
|||||||| |||||||| |||| ||||| ||||||| ||||||||||| ||||||| |
Sbjct 1475 CACTGCCTGGTAAATGTATAGACGGGTCTTGTTTCATTTGGCCGCCCTTTTCTGTTTTTT 1534
Query 1574 TGCCTTATCTGGC-CCTTTTATGTACCTTGGAATCTTATCTAGTTTAAAAAAGATTGTAA 1632
||||||||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1535 TGCCTTATCTGGCTCCTTT-ATGTACCTTGGAATCTTATCTAGTTGAAAAAGGATTGTAA 1593
Query 1633 CCTTCTAGAAAACCATATTCTGTTGACAGTATATACATGTCTATCCAAGCATTTTGAAGT 1692
||||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1594 CCTTCTAGAAAGCAATATTCTGTTGACTGTATATACTTGTCTATCCAAGCATTTTGAAGT 1653
Query 1693 CTC 1695
|||
Sbjct 1654 CTC 1656
> Ahg321080 jgi|Araly1|321080|fgenesh1_pm.C_scaffold_4001137
Length=1203
Score = 292 bits (158), Expect = 4e-78
Identities = 273/328 (83%), Gaps = 10/328 (3%)
Strand=Plus/Plus
Query 176 CGTGCG-ATTTCTGCGGCGAGCGTACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAG 234
|||||| |||| ||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 32 CGTGCGAATTT-TGCGGCGAGAGAACGGCGGTTCTGTTTTGTAGAGCCGATACGGCGAAG 90
Query 235 CTGTGTTTGCCTTGTGATCAGCAAGTTCACACGGCGAATC-TGTTGTCGAGGAAGCACGT 293
|| |||||||||||||| ||||| || ||| | ||||| | | || ||||||||||| ||
Sbjct 91 CTTTGTTTGCCTTGTGACCAGCACGTGCACTCTGCGAACCTTCTT-TCGAGGAAGCATGT 149
Query 294 GCGATCTCAGATCTGCGATAATTGCGGTAACGAGCCAGTCTCTGTTCGGTGTTTCACCGA 353
|| ||||||||||| ||||| || | || ||||| || |||| ||||| ||||||||
Sbjct 150 TCGTTCTCAGATCTGTGATAACTGTAGCAAAGAGCCGGTGACTGTACGGTGCTTCACCGA 209
Query 354 TAATCT-GATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGTTGTTCAGTTT-CC 411
|||||| | | ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 210 TAATCTCG-TCTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCC-TCCGCC 267
Query 412 GATG-CTCATGTTCGATCCGCCGTGGAAGGTTTTTCCGGTTGTCCATCGGCGTTGGAGCT 470
| | | |||| || ||||||||||| || ||||| |||||||| |||| ||||||||
Sbjct 268 GC-GACGCATGAACGCTCCGCCGTGGAGGGGTTTTCTGGTTGTCCTTCGGTTTTGGAGCT 326
Query 471 TGCTGCTTTATGGGGACTTGATTTGGAG 498
||||||| | |||||| | |||||||||
Sbjct 327 TGCTGCTGTGTGGGGAATCGATTTGGAG 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5