BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28060.1
Length=2604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473006 jgi|Araly1|473006|fgenesh2_kg.1__2960__AT1G28060.1 3747 0.0
Ahg938540 jgi|Araly1|938540|scaffold_502731.1 699 0.0
> Ahg473006 jgi|Araly1|473006|fgenesh2_kg.1__2960__AT1G28060.1
Length=2479
Score = 3747 bits (2029), Expect = 0.0
Identities = 2342/2490 (94%), Gaps = 34/2490 (1%)
Strand=Plus/Plus
Query 13 AAACCCTAAATTCTGCCATGGATAAGGAGAGATATTCCAGGAGCCACCGTGACGATCGTG 72
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCCTAAAATCTGCCATGGATAAGGAGAGATATTCCAGGAGCCACCGTGACGATCGTG 60
Query 73 ATCGAGATTCGAGTCCCGACCATTCTCCACAACGTGAAGGAGGACGCCGCCGTGACCGCG 132
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 61 ATCGAGATTCGAGTCCCGACCATTCTCCACAACGTGAAGGCGGTCGCCGCCGTGACCGCG 120
Query 133 ATGTTGATTCGAAGCGTCGTGATTCAGATCACTACCGTTCATCGAGGCGCGGCGATaggg 192
| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ACGGTGATTCCAAGCGTCGTGATTCAGATCACTACCGTTCATCGAGGCGCGACGATAGGG 180
Query 193 aagatgagagagataggaccaaggataga---------agagggagatctgtagagcgag 243
||||||||||||||||||||||||||||| |||||| |||||||||| ||||
Sbjct 181 AAGATGAGAGAGATAGGACCAAGGATAGAGCTCGGGGCAGAGGGGGATCTGTAGATCGAG 240
Query 244 gcgagagagaagggagtagagaTAGGGAAAAGCATCACCATGAGAGGTCTCACGAAGGTA 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 GCGAGAGAGAAGGGAGTAGAGATAGGGAAAAGCATCACCATGAGAGGTCTCACGAAGGAA 300
Query 304 GTAAAGAGAAGGAATCGAGGAGCAAGAGGAAAGATAGAGAGGAAGAGAATGGGGCTAGGG 363
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 GTAAAGAGAAAGAATCGAGGAGCAAGAGGAAAGAGAGAGAGGAAGAGAATGGGGCTAGGG 360
Query 364 ATGGGAAGAAGAAATCTAGGTTTGCTGATGGGAATGGTGAGAGGAGGAGCAGGTTTGAGG 423
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGGAAGAAGAAATCTAGGTTTTCTGATGGGAATGGTGAGAGGAGGAGCAGGTTTGAGG 420
Query 424 ATGTGGCTATTGAAGTTGAGAACAAAGATGCTCAAGTCTCTGAG---GGTTCTGGGGCTA 480
|||||||||| ||||||||||||||| ||| ||||||||||| | ||||| |||||
Sbjct 421 ATGTGGCTATGGAAGTTGAGAACAAAAATGGTCAAGTCTCTGTGTCTTCTTCTGAGGCTA 480
Query 481 CGAATCCAACCAGTGGCGTTACGATGGGAGCCTCTACATATAGTTCTATTCCATCGGAAG 540
||||||||||| ||||| ||||| || || ||| ||||| ||||| || |||||||||
Sbjct 481 TGAATCCAACCAACGGCGTCACGATTGGCGCTTCTTCATATGGTTCTGTTGCATCGGAAG 540
Query 541 CTT-C-TGCTGCCCCTAGTCAAACACTGCTCACTAAGGTATCTTCGATATCTACAACGGA 598
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTCCATG--GCCCCTAGTCAAACACTGCTCACTAAGGTATCTTCGATATCTACAACGGA 598
Query 599 TGAAAATAAGGCTAGTGTTGTCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGG 658
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAAAATAAGGGTAGTATTGTCAGATCTCATGAGGTTCCTGGAAAATCTAGTACAGATGG 658
Query 659 AAGACCATTGTCCACAGCTGGGAAAAGTAGTGCAAACTTGCCTCTTGATTCATCAGCGTT 718
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 AAGACCATTGTCAACAGCTGGGAAAAGTAGTGCAAACTTGTCTCTTGATTCATCAGCGTT 718
Query 719 AGCAGCGAAAGCT-AGGAAAGCACTACAATTGCAAAAGGGATTGGCTGATAGATTGAAGA 777
|||||||||| | |||||||| || ||||||||||||||||||| | ||||||||
Sbjct 719 ---AGCGAAAGCTCA-TAAAGCACTGCAGCTGCAAAAGGGATTGGCTGAAAAATTGAAGA 774
Query 778 ACCTTCCTTTGCTGAAGAAGGCTACTAAGCCAACTTCAGAAGGTAGCCCACATACCAGAG 837
||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 775 ACCTTCCTTCGCTGAAGAAGGTTACTAAGCCAACTTCAGAAGGTAGCCCACACACCAGAG 834
Query 838 TGCCACCAT-CGACTACCACTCCTGCTGTCTCTACAGGCACATCTTTTGCTTCAACATTA 896
||||| ||| || ||||||||||||||| ||||||||||||||||| ||||||| || ||
Sbjct 835 TGCCATCATCCG-CTACCACTCCTGCTGCCTCTACAGGCACATCTTCTGCTTCAGCAGTA 893
Query 897 CCACATACTGGCCTTGCTGGCTTTGGGAGTATTGCCAACATTGAAGCTGTTAAGCGAGCC 956
|||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||
Sbjct 894 CCACATACTGGCCTTGCTGGCTTTGGAAGTATTTCCAACATTCAAGCTGTTAGGCGAGCT 953
Query 957 CAGGAGCTGGCAGCTAATATGGGATTTCATCAGGAT-CGAGAGTTCGCTCCCGTTATTAA 1015
|||||||||||||||| |||||||||||||||||| | | ||| | ||||| ||| ||
Sbjct 954 CAGGAGCTGGCAGCTAGCATGGGATTTCATCAGGATCCCA-TGTTTGGTCCCGCTATCAA 1012
Query 1016 CCTATTTCCAGGACAGGCACCCTCAGATATGACTGTTGCACAGAGACCGGAAAAGCCCCC 1075
|||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1013 CCTATTTCCAGGGCAGGCACCCTTAGATACGACTGATGCACAGAGACCGGAAAAGCCCCC 1072
Query 1076 TGTTCTGCGCGTGGATGCACTAGGAAGGGAGATAGATGAACACGGAAATGTGATTAGTGT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 TGTTCTGCGCGTGGATGCACTAGGAAGGGAGATAGATGAACACGGAAATGTGATTAGTGT 1132
Query 1136 GACTAAACCAAGCAATCTTAGTACATTGAAGGTTAACATAAACAAAAAGAAGAAAGATGC 1195
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1133 GACTAAACCAAGCAATCTTAGTACATTGAAGGTTAACATAAACAAACGGAAGAAAGATGC 1192
Query 1196 TTTTCAGATTCTTAAACCTCAACTGGAAGCAGATCTAAAAGAAAACCCCTATTTTGACAC 1255
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1193 TTTTCAGATTCTTAAACCTCAACTGGAAGCAGATCTAAAAGAAAACCCCCATTTTGACAC 1252
Query 1256 AAGGATGGGTATTGATGaaaaaaaGATTCTGAGACCTAAACGTATGAGTTTCCAGTTTGT 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AAGGATGGGTATTGATGAAAAAAAGATTCTGAGACCTAAACGTATGAGTTTCCAGTTTGT 1312
Query 1316 TGAGGAAGGTAAATGGACAAGAGATGCTGAAAATTTGAAGTTTAAGAGTCATTTTGGTGA 1375
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1313 TGAGGAAGGTAAATGGACAAGAGATGCTGAGAATTTGAAGTTTAAGAGTCATTTTGGTGA 1372
Query 1376 AGCAAAAGCGAAGGAGCTGAAGGTGAAGCAAGCACAACTGGCTAAGGCAAACG-ATGATA 1434
|||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 1373 AGCAAAAGCGAAGGAGCTGAAGGTGAAGCAAGCACAACTGGCAAAGGCAA-CGGATGATA 1431
Query 1435 TAAATCCAAATTTGATAGAGGTATCCGAACGTGTCCCGAGAAAAGAGAAGCCCAAGGAGC 1494
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1432 TAAATCCAAATTTGATAGAGGTTTCCGAACGTGTCCCGAGAAAAGAGAAGCCCAAGGAGC 1491
Query 1495 CAATTCCAGATGTTGAGTGGTGGGATGCAAATGTCCTCACCAATGGCGAATACGGCGAAA 1554
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1492 CAATTCCAGATGCTGAGTGGTGGGATGCAAATGTCCTCATCAATGGCGAATACGGCGACA 1551
Query 1555 TAACTGATGGCACCATTACTGAAAGCCATCTGAAGATAGAAAAACTTACTCATTACATTG 1614
|| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1552 TAGCTGATGGCACCATAACTGATGGCCATCTGAAGATAGAAAAACTTACTCATTACATTG 1611
Query 1615 AGCATCCTCGTCCCATAGAGCCACCTGCAGAGGCAGCTCCTCCACCACCCCAACCTCTTA 1674
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1612 AGCATCCGCGTCCCATAGAGCCACCTGCAGAGGCAGCGCCTCCACCACCCCAACCTCTTA 1671
Query 1675 AACTGACAAAGAAGGAACAGAAGAAACTGCGAACCCAGAGGCGTCTAGCAAAAGAAAAGG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 AACTGACAAAGAAGGAACAGAAGAAACTGCGAACCCAGAGGCGTCTAGCAAAAGAAAAGG 1731
Query 1735 AGAAACAGGAGATGATCAGACAAGGGTTGCTGGAACCACCAAAAGCAAAGGTGAAGATGA 1794
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1732 AGAAACAGGAGATGATCAGACAAGGGTTGCTGGAACCACCAAAGGCAAAGGTGAAGATGA 1791
Query 1795 GCAACTTAATGAAGGTTCTTGGTTCTGAAGCGACCCAAGACCCAACAAAGCTTGAAAAAG 1854
| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1792 GTAACTTAATGAAGGTTCTTGGGTCTGAAGCGACCCAAGACCCAACCAAGCTTGAAAAAG 1851
Query 1855 AGATCCGCACAGCAGCTGCTGAGCGTGAACAGGCTCATACAGATAGGAATGCTGCCCGGA 1914
|||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||
Sbjct 1852 AGATCCGCACCGCAGCTGCGGAGCGTGAACAGGCTCATACGGACAGGAATGCCGCCCGGA 1911
Query 1915 AGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAGAGGAAGCTTTTCGATGATCCAACAA 1974
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AACTAACCCCTGCAGAGAAACGTGAGAAGAAAGAGAGGAAGCTTTTCGATGATCCAACAA 1971
Query 1975 CGGTTGAGACGATTGTGTCGGTGTACAAGATCAAAAAGTTATCGCACCCTAAAACAAGAT 2034
|||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 1972 CGGTTGAGACAATTGTCTCGGTATACAAGATCAAAAAGCTATCGCATCCTAAAACAAGAT 2031
Query 2035 TCAAAGTGGAGATGAATGCAAGAGAGAACAGATTAACAGGGTGTAGTGTGATGACGGATG 2094
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2032 TCAAAGTGGAGATGAATGCAAGAGAGAACAGATTAACAGGGTGTAGTGTGATGACGGAGG 2091
Query 2095 AAATGAGTGTGGTTGTGGTTGAGGGCAAGAGCAAAGCGATAAAGAGATACGGGAAGCTGA 2154
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 GAATGAGTGTGGTTGTGGTTGAGGGCAAGAGCAAAGCGATAAAGAGATACGGGAAGCTGA 2151
Query 2155 TGATGAAGCGAATAAACTGggaagaggcagagaggaaggaagggaatgaagacgaggaag 2214
|| ||||||||||||||||| |||||||||||| |||||| | ||||||||| |||||||
Sbjct 2152 TGCTGAAGCGAATAAACTGGCAAGAGGCAGAGAAGAAGGATGAGAATGAAGATGAGGAAG 2211
Query 2215 aagaag---tgaatggcggaaACAAGTGTTGGTTGGTTTGGCAAGGAAGTATTGGGAAAC 2271
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2212 AAGAAGAAGTGAATGGCGGAAACAAATGTTGGTTGGTTTGGCAAGGAAGTATTGGGAAAC 2271
Query 2272 CGAGTTTTCATAGGTTTCATGTACACGAATGCGTGACGGAATCCACTGCCAAGAAAGTTT 2331
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2272 CGAGCTTTCATAGGTTTCATGTACATGATTGCGTGACGGAATCCACTGCCAAGAAAGTTT 2331
Query 2332 TCATGGATGCTGGTGTTGTTCACTACTGGGATCTCGCTGTCAATTACTCAGACGACTAAA 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2332 TCATGGATGCTGGTGTTGTTCACTACTGGGATCTCGCTGTCAATTACTCAGACGACTAAA 2391
Query 2392 TCCTCTCTCCCTCATATCATCATCATCAC-C-TTGAAATGCGTTAACTATTTGGACATGT 2449
|||||| | | |||||||||||||||||| | ||||||||| ||||||||||| ||||||
Sbjct 2392 TCCTCT-TGC-TCATATCATCATCATCACACCTTGAAATGCTTTAACTATTTGCACATGT 2449
Query 2450 TATTGCACTTCTATGAACATATATTCCCCT 2479
|||||||||| | |||||||||||||||||
Sbjct 2450 TATTGCACTTGTTTGAACATATATTCCCCT 2479
> Ahg938540 jgi|Araly1|938540|scaffold_502731.1
Length=637
Score = 699 bits (378), Expect = 0.0
Identities = 542/619 (88%), Gaps = 19/619 (3%)
Strand=Plus/Plus
Query 1774 CAAA-AGCAAAGGTGAAGATGAGCAACTTAATGAAGGTTCTTG-GTTCTGAAGCGACCCA 1831
|||| | |||||||||| ||| ||||| ||||||||||||||| | |||||||| |||||
Sbjct 3 CAAAGATCAAAGGTGAAAATGGGCAACCTAATGAAGGTTCTTGCG-TCTGAAGCAACCCA 61
Query 1832 AGACCCAACAAAGCTTGAAAAAGAGATCCGCACAGCAGCTGCTGAGCGTGAACAGGCTCA 1891
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 AAACCCAACCAAGCTTGAAAAAGAGATCCGCACAGCAGCTGCTGAGCGTGAACAAGCTCA 121
Query 1892 TACAGATAGGAATGCT-GCCCGGAAGCTAACTCCTGCAGAGAAACGTGAGAAGAAAGAGA 1950
|| || ||||| | | || |||||| ||||||| ||||||||||||||||||||| |
Sbjct 122 TATGGAAAGGAACG-TAGCGAGGAAGCGAACTCCTAAAGAGAAACGTGAGAAGAAAGAAA 180
Query 1951 GGAAGCT-TTTCGATGATCCAACAACGGTTGAGACGATTGTGTCGGTGTACAAGATC-A- 2007
||||| | ||| ||||||||||| || |||||||||||||||||||||||||||||| |
Sbjct 181 GGAAGGTCTTT-GATGATCCAACGACAGTTGAGACGATTGTGTCGGTGTACAAGATCGAC 239
Query 2008 AA-AAGTTATCGCA-CCCTAAAACAAGATTCAAAGTGGAGATGAATGCAAGAGAGAACAG 2065
|| ||| ||||||| ||| |||||||||||||||||||||| |||||||| | ||||||
Sbjct 240 AAGAAGCTATCGCATCCC-AAAACAAGATTCAAAGTGGAGAGGAATGCAAAACAGAACAA 298
Query 2066 ATTAACAGGGTGTAGTGTGATGACGGATGAA-ATGAGTGTGGTTGTGGTTGAGGGCAAGA 2124
||||||||||| | ||||||||| |||| || |||||||| |||||||||||||| ||||
Sbjct 299 ATTAACAGGGTTTTGTGTGATGATGGAT-AATATGAGTGTTGTTGTGGTTGAGGGTAAGA 357
Query 2125 GCAAAGCGATAAAGAGATACGGGAAGCTGATGATGAAGCGAATAAACTGggaagaggcag 2184
||||||| ||||||||||||| |||||||||| ||||||| |||||||||||| |||||
Sbjct 358 GCAAAGCAATAAAGAGATACGAGAAGCTGATGCTGAAGCGTATAAACTGGGAAAAGGCAA 417
Query 2185 agaggaaggaag--g-g-aatgaagacgaggaagaagaagtgaatggcggaaACAAGTGT 2240
||| |||||||| | | || ||||| || |||||||||| |||||| ||||||||||||
Sbjct 418 AGAAGAAGGAAGACGAGGAA-GAAGATGAAGAAGAAGAAGAGAATGGTGGAAACAAGTGT 476
Query 2241 TGGTTGGTTTGGCAAGGAAGTATTGGGAAACCGAGTTTTCATAGGTTTCATGTACACGAA 2300
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 477 TGGTTGGTTTGGCAAGGAAGTGTTGAGAAACCGAGTTTTCATAGGTTTCATGTACAAGAG 536
Query 2301 TGCGTGACGGAATCCACTGCCAAGAAAGTTTTCATGGATGCTGGTGTTGTTCACTACTGG 2360
||| |||| |||| |||||||||||||||||| ||||||||||||| |||||||| |
Sbjct 537 TGCTTGACCAAATCTGCTGCCAAGAAAGTTTTCACAGATGCTGGTGTTGCTCACTACTTG 596
Query 2361 GATCTCGCTGTCAATTACT 2379
||||| ||| ||||| |||
Sbjct 597 GATCTTGCTCTCAATAACT 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98196651610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5