BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28070.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473007 jgi|Araly1|473007|fgenesh2_kg.1__2961__AT1G28070.1 959 0.0
> Ahg473007 jgi|Araly1|473007|fgenesh2_kg.1__2961__AT1G28070.1
Length=730
Score = 959 bits (519), Expect = 0.0
Identities = 647/706 (92%), Gaps = 20/706 (3%)
Strand=Plus/Plus
Query 1 Gttttcattccttccaaatatctatctcttttgtttcttcttcttcttctcctctgcttt 60
||||||||||||| |||| | | || || |||||||||||||||| ||||||||||||||
Sbjct 1 GTTTTCATTCCTT-CAAA-A-C-AT-TC-TTTGTTTCTTCTTCTTTTTCTCCTCTGCTTT 54
Query 61 tGGAATCATTATAGTGATAAGAGGAGATGGCGGATATAACAGAATATCTAGAGAGATCGA 120
||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 55 TGGAAACATTATAGTGATCAGAGGAGATGGCTGATATAACAGAATATCTGGAGAGATCGA 114
Query 121 TGCAGAATTGTTCACTTATTGATCGGAGAAGTAGTATGGGAGATGGATTTGGTATGAGCG 180
|||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||
Sbjct 115 TGCAGAATTGTTCACTGATTGATCGGAGAAGTAGTATCGGAGATGGATATGGTATGAGCG 174
Query 181 ATGAACATATCCCGATCTCAGATAGATTCTTGGAGCTCAGTTCTCACTTCTCTGTTCCTT 240
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 175 ATGAACATATCCCGATCTCAGATAGATTTTTGGAGCTCAATTCTCACTTGTCTGTTCCTT 234
Query 241 CTCATTTGGAACAGTGTCTTGATCTTAAGACAGGAGAGATTTACTACAGAAGCTGGAATA 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 235 CTCATTTGGAACAGTGTCTTGATCTTAAGACAGGAGAGATCTACTACAGAAGCTGGAATA 294
Query 301 GTGGAATGAGAGTGAAAGAAGATCCGAGAAAATCGATGAGTCGTGGTAACTATGCAGACC 360
|||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||| |
Sbjct 295 GTGGAATGAGAGTGAAGGAAGATCCGAGAAAATCGGTGAGTCGTGGCAACAATGCAGATC 354
Query 361 AATCCAGTGGTGAATCGTCTGGAACAGTTTTTTCATCAGAAGAAGTTAGCTCGTATTATG 420
|||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||
Sbjct 355 AATCCAGTGGAGAATCGTATGGAACAGTGTTTTCATCAGAAGAAGTTAGTTCGTATTATG 414
Query 421 AAAGCGAAGAGTCTTCATCAGAGTCGTCTCCTTCATC-A-A-GAAAGTATCACAA--A-G 474
|||||||||||||||||||||||||||| |||||||| | | ||||| ||||||| | |
Sbjct 415 AAAGCGAAGAGTCTTCATCAGAGTCGTCGCCTTCATCGAGAAGAAAGAATCACAAGTACG 474
Query 475 AGGAACAAGACGAAGA---TGTTCTTGTGGTAGCTGGTTGCAAAGCTTGTTTAATGTATT 531
||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 AGGAAGAAGAAGAAGAAGATGTTCTTGTGGTAGCTGGTTGCAAAGCTTGTTTCATGTATT 534
Query 532 TCATGGTACCTAAACTCTTTAAGGATTGCCCCAAATGTGCAACTCAGCTTCTCCACTTTG 591
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 535 TCATGGTACCTAAACTCTTAAAGGATTGCCCCAAGTGTGCAACTCAGCTTCTTCACTTCG 594
Query 592 ATCAACTTCACTCTACTT---CTCCTTGAACCTATCTTTCGTTGTTGAttt-ttttctca 647
|| ||| ||||||||||| |||||| |||||||||||| |||||| ||| ||||||||
Sbjct 595 ATGAACCTCACTCTACTTGATCTCCTTAAACCTATCTTTCTTTGTTGTTTTCTTTTCTCA 654
Query 648 ttt-cattttcagttttcttcacatagatttgagggttgtcttctc 692
||| |||||| | ||||||||||||||||||| || ||||||||||
Sbjct 655 TTTTCATTTTTATTTTTCTTCACATAGATTTGTGGTTTGTCTTCTC 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5