BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28080.1
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313512 jgi|Araly1|313512|fgenesh1_pm.C_scaffold_1002292 1260 0.0
> Ahg313512 jgi|Araly1|313512|fgenesh1_pm.C_scaffold_1002292
Length=891
Score = 1260 bits (682), Expect = 0.0
Identities = 825/892 (92%), Gaps = 17/892 (2%)
Strand=Plus/Plus
Query 1 ATGACCAATATGGTTCCTCTTGAATCCTCAACGCTTTTCGGTGTTTACGGCGGTTTCACG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGACCAATATGGTTCCTCTTGAATCCTCAACGCTTTTCGGCGTTTACGGCGGTTTCACG 60
Query 61 GACTCGATGATGATGAGAGAAACAACTACCAACAATCAAGATCCTAGTGGAGATACATGT 120
||| |||||||||||||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 61 GACGCGATGATGATGAGAGAAACATCCACAAACAATCAAGATCCTAGCGGAGATACATGC 120
Query 121 TCCGTCTCCGATCCAGCACCAGGTTCTACTGATTATTATAACATCTCTTCTTCTCCAGTG 180
||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGTATCCGATCCAACAGCAGCTTCTACTGATTATTATAACATCTCTTCTTCTCCAGTG 180
Query 181 AAAGACGACGGAACGGCCCCAAAGAACGACGTCGTTTGTTCTATTAACGTAGACGATAAT 240
|||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 AAAGACGATGGAACGGCCGCAAAGAACGACGTCGTTTGTTCTATTAACGTAGAAGATAAT 240
Query 241 AAAGACAAATCTTGGCTCCGCTTAGGTATAGGCCCTGA-G-GAG-AAC-A-CGGA-TGGC 294
|||||||||||||||||||| ||||||||||||||||| | ||| ||| | | ||
Sbjct 241 AAAGACAAATCTTGGCTCCGTTTAGGTATAGGCCCTGAGGAGAGCAACAATAACACGGGG 300
Query 295 TCGTATAAGCTCCAACGTTGTTGTAGCAAAAACGGAAGTGGAAGAGAGAATTCATTAGAG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGTATAAGCTCCAACGTTGTTGTAGCAAAAACGGAAGTGGAAGAGAGAATTCATTAGAG 360
Query 355 CTGAGCTTGTTCTCTTCATCCTCAA---C--C----GCGGTTAGTAGTAGTATAGATCAC 405
|| |||||||||||||||||||||| | | |||||||||| |||| ||||||||
Sbjct 361 CTCAGCTTGTTCTCTTCATCCTCAACCGCGGCAGGAGCGGTTAGTAATAGTGTAGATCAC 420
Query 406 CTACCGACGCAACCGTTGCAGCTGCCATATCATCATGATCAGTTATTGACGATGCGTGGA 465
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CTACCGACGCAACCGCCGCAGCTACCATATCATCATGATCAGTTATTGACGATGCGTGGA 480
Query 466 CCGTCGTTGGTTTACAACCACCAATTAATGAAGCCTCAAACGTTATTAAATCGCGGCTTT 525
||||| |||||||| || ||||||||||| | | ||||||||||||||||||||||||||
Sbjct 481 CCGTCATTGGTTTATAATCACCAATTAATTAGGTCTCAAACGTTATTAAATCGCGGCTTT 540
Query 526 TCGTTTCCATCTTCAAAGCCGTGGATACCTCAATATATGGCGCCGTTTAGACCGTCATCA 585
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 541 TCGTTTCCATCTTCAAAGCCGTGGATACCGCAATATACGGCACCGTTTAGACCGTCATCA 600
Query 586 TTGAGTGACCGTGACGTCACTAATAATAATAGTCTTTC-AAGAAGCTGTTGTGTGGATGA 644
||||||||||||||||||||||| ||||| ||| |||| ||| || ||||||||||||||
Sbjct 601 TTGAGTGACCGTGACGTCACTAACAATAACAGTGTTTCAAAG-AGTTGTTGTGTGGATGA 659
Query 645 GGGAGGAGCTGGACCAAGCTCTGAGTTTAGGGTTCTTGATCCTCCAAGAAGACCACATTC 704
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGAGGAGCTGGACCAAGTTCCGAGTTTAGGGTTCTTGATCCTCCAAGAAGACCACATTC 719
Query 705 TGGTCTTTGGTTTCTTCTTCAAGCTTCACAATTTCAGGAAAGGGAACCGTTCTTGCCTCA 764
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 720 TGGTCTTTGGTTTCTTCTTCAAGCTTCACAATTTCAGGAAAAGGAACCGTTCCTGCCTCA 779
Query 765 AGTAAATAAAAGCTACTTGAGAATCAAAGATGGGAGAATCACTGTTAGATTGTTAATTAA 824
||| || ||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 780 AGTGAACAAAAGCTACTTGAGAATCAAAGATGGGAGAATCACCGTTAGATTGCTAATTAA 839
Query 825 GTACCTCATGAAGAAACTTGAATTGGATAGCGAATCTGAGGTAAATATCTAA 876
|||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 840 GTACCTTATGAAGAAACTTGACTTGGATAGCGAATCTGAGGTAAATATATAA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56297382110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5