BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28090.1
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473010 jgi|Araly1|473010|fgenesh2_kg.1__2964__AT1G28090.1 2678 0.0
> Ahg473010 jgi|Araly1|473010|fgenesh2_kg.1__2964__AT1G28090.1
Length=1681
Score = 2678 bits (1450), Expect = 0.0
Identities = 1603/1678 (96%), Gaps = 6/1678 (0%)
Strand=Plus/Plus
Query 18 TCCGATCTGTTTAGCTTCTTCTTCTCCGACTCTCGTAATGTCGTGATATGTTCAATAAGC 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCGATCTGTTTAGCTTCTTCTTCTCCGACTCTCGTAATGTCGTGATATGTTCAATAAGC 60
Query 78 TTTCTTCAATGGCGTATGGTTCTTTCGGCGTCTCATCAAAAGCTCTAGTCTAT-TGCCGT 136
||||||||||||||||||||||||| ||||||||||| ||||||||||||| | |||||
Sbjct 61 TTTCTTCAATGGCGTATGGTTCTTTTGGCGTCTCATCGAAAGCTCTAGTCT-TCTGCCGA 119
Query 137 CCCTGCTATGGCTCCATTAGAGATCTCCCTTTCTCCCTCCGAACGTCAACAATTGGTCAT 196
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 CCTTGCTATGGCTCCATTAGAGATCTCCCTTTCTCTCTCCGAACATCAACAATTGGTCAT 179
Query 197 TGCGGCTGTGTTGGAGCTATCGCAGCACCTAGAAATGTTGTGAAACCTCGCAAGGAAGAA 256
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 180 TGCGGCTGTGTTGGAGCTATTGCAGCACCTAGAAATGTCGTGAAACCACGCAAGGAAGAA 239
Query 257 AGTCGTGATTTTAGTGGAGCACGGGGAAGTAATAAGGATAAATCGATGCCATGGAAGAAG 316
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 240 AGTCGTGATTTTAGTGGAGCACGGAGAAGTAATAAGGATAAATCGATGCCGTGGAAGAAG 299
Query 317 TTAGATGCTAATGAATTTGGTATTCAGAGGTCAATGATACCAGATTCTACACGGATGGTT 376
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 300 TTAGATGCTGATGAATTTGGTATTCAGAGGTCAATGATCCCAGATTCTACACGGATGGTT 359
Query 377 CTCAATAAACTCAAGAAAAAAGGATTTCAAGTTTACCTAGTTGGAGGTTGTGTTCGGGAT 436
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCAATAAACTTAAGAAAAAAGGATTTCAAGTTTACCTAGTTGGAGGTTGTGTTCGGGAT 419
Query 437 CTTATTCTAGATAGAATCCCCAAGGATTTTGATGTTATCACTACTGCTGAACTCAAGGAG 496
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 420 CTTATTCTAGATAGAATCCCCAAGGATTTTGATGTTATCACTACAGCTGAACTCAAGGAG 479
Query 497 GTACGGAAAGTATTTCCCGGCTGTCAAATTGTTGGAAGACGATTTCCAATATGTCATGTT 556
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 GTACGGAAAGTATTTCCCCGCTGTCAAATTGTTGGAAGACGATTTCCCATATGTCATGTT 539
Query 557 TATGTTGATGATATTATCATAGAGGTGTCAAGTTTTAGTACTTCAGCAAGGACTGGTAAA 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATGTTGATGATATTATCATAGAGGTGTCAAGTTTTAGTACTTCAGCAAGGACTGGTAAA 599
Query 617 GCGCCCAATAAAAGCTTTAGACGGCCTGCGGGATGCGATGAGCGGGATTATATTCGTTGG 676
||||| | ||||| ||| ||| ||||||||| ||||||||||| |||||||| ||||||
Sbjct 600 GCGCCTAGTAAAAACTTGAGAAAGCCTGCGGGCTGCGATGAGCGTGATTATATCCGTTGG 659
Query 677 AAGAATTGCTTACAGCGTGATTTTACAGTCAACGGGTTGATGTTTGATCCATCGGAGAAT 736
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 660 AAGAATTGCTTACAGCGTGATTTTACAGTCAATGGGTTGATGTTTGATCTATCAGAGAAT 719
Query 737 GTAGTGTATGACTATATAGGAGGAGTTGAAGATTTAAGGAATTCTAAAGTTAGAACAGTA 796
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GTAGTGTATGACTATATAGGAGGAGTTGAAGATATAAGGAATTCTAAAGTTAGAACAGTA 779
Query 797 TCCGCAGCGAATCTTTCATTTGTCGAGGATACAGCTCGCATTTTACGTGCAATTAGGATT 856
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCCGCAGCGAAGCTTTCATTTGTCGAGGATACAGCTCGCATTTTACGTGCAATTAGGATT 839
Query 857 GCAGCAAGGTTAGGATTCAGCTTGACTAAAGACGTTGCTATTTCTGTGAAGGAGCTTTCT 916
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GCAGCGAGGTTAGGATTCAGCTTGACTAAAGATGTTGCTATTTCTGTGAAGGAGCTTTCT 899
Query 917 TCTTCATTACTGAGACTTGACCCTTCAAGGATTCGGATGGAAATCAATTATATGCTGGCA 976
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCTTCATTGCTGAGACTTGACCCTTCAAGGATTCGGATGGAAATCAATTATATGCTGGCA 959
Query 977 TATGGGTCCGCAGAAGCTTCTTTACGGTTATTATGGAGATTTGGCCTCATGGAAATTCTT 1036
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 960 TATGGGTCCGCAGAAGCTTCTTTACGGCTGTTATGGAGATTTGGCCTCATGGAAATTCTT 1019
Query 1037 CTACCTATCCAGGCATCTTATCTTGTTTCCCAAGGGTTCCGGAGGCGTGATGGAAGGTCC 1096
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1020 CTACCGATCCAGGCATCTTATCTTGTTTCCCAAGGCTTCCGGAGGCGTGATGGAAGGTCC 1079
Query 1097 AACATGCTTCTGTCGCTATTTCGCAACCTTGACCGACTTGTAGCACCTGATCGACCATGC 1156
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1080 AACATGCTTCTGTCCCTATTTCGCAACCTTGATCGACTTGTAGCACCTGATCGACCATGC 1139
Query 1157 AGCGAGTTCCTCTGGATTGGGATCTTAGCATTCCACAAAGCATTAGTCGATCAGCCTCGG 1216
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 AACGAGTTCCTCTGGATTGGGATCTTAGCATTCCACAAAGCATTGGTCGATCAGCCTCGG 1199
Query 1217 GATCCCACGGTAGTAGCTTCCTTCTGCCTTGCCATCTACAGTGAAGTATCTTTATCAGAA 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATCCCACGGTAGTAGCTTCCTTCTGCCTTGCCATCTACAGTGAAGTATCTTTATCAGAA 1259
Query 1277 GCCATCGCAATTGCAAGGAGCAACTCAAAACAACACAACTCACACTTCCAAGAA-TTGTC 1335
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 1260 GCCATCGCGATTGCAAGGAGCAACTCCAAACAACACAACTCACACTTCCAAGAACTT-TC 1318
Query 1336 CAGTCCTGAAAAGGACACTGCTGACTCAGAGAGCAAAATATCGCAGCAGGTCATAAAATT 1395
||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1319 TGGTCATGAAAAAGACACTGCTGACTCAGAGAGCAAATTATCGCAGCAGGTCATAAAATT 1378
Query 1396 AGCAGAGTCTATAAGATCAGCTGCGCGGAAATTGAATAACCGAGACTACATAGCTAACGC 1455
||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 1379 AGCAGAGTCAATAAGATCAGCTGCGCGAAAATTGAATGATCGAGACTACATAGCTAACGC 1438
Query 1456 AATGAGCAAATACCCGCAAGCACCGGGCTCTGATATGGTATTCTTGTCAAGACTTATGTT 1515
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct 1439 AATGAGCAAATACCCGCAAGCACCAGGCTCTGATATGGTGTTCTTGTCAAGACCTATGTT 1498
Query 1516 GGAGAGAGTAGAGAAAATGTTTGGAAATGTGAGAAGAAA-AGGAAACCAAGAGAGAGATG 1574
||||||||| |||||||||||||||| |||||||||||| || ||||||||||| ||| |
Sbjct 1499 GGAGAGAGTGGAGAAAATGTTTGGAAGTGTGAGAAGAAAGAG-AAACCAAGAGACAGAGG 1557
Query 1575 ATGTCCCAAGTTTAGAGCGTAGGATAAACTACAAGTCTCTTGCCCTTGGAGACTTTCATG 1634
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1558 ATGTTCCAAGTTTAGAGCGTAGGATAAACTACAAGTCTCTTGCTCTTGGAGACTTTCACG 1617
Query 1635 AGACACGTCGTGTTTTTGCTAGGATTGTCTTTGATACCATTTACCCTCTGGCCTAAAA 1692
|||||||||||||||||||| ||||||| |||||||||||||| |||| | | |||||
Sbjct 1618 AGACACGTCGTGTTTTTGCTCGGATTGTTTTTGATACCATTTATCCTCCGACTTAAAA 1675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69933689820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5