BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28110.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473017 jgi|Araly1|473017|fgenesh2_kg.1__2971__AT1G28110.2 2344 0.0
Ahg482299 jgi|Araly1|482299|fgenesh2_kg.4__1359__AT2G33530.1 1417 0.0
Ahg489176 jgi|Araly1|489176|fgenesh2_kg.6__2310__AT5G23210.1 71.3 2e-11
> Ahg473017 jgi|Araly1|473017|fgenesh2_kg.1__2971__AT1G28110.2
Length=1795
Score = 2344 bits (1269), Expect = 0.0
Identities = 1407/1474 (95%), Gaps = 8/1474 (1%)
Strand=Plus/Plus
Query 11 CATCACTAGTCTCCTCTTCACTTCTTCTC-AAACCAAACAC--CGAGAAGTGACATCATG 67
||||||| ||||||||||| ||||||||| ||||||||||| | |||||||||||||||
Sbjct 1 CATCACTTGTCTCCTCTTC-CTTCTTCTCAAAACCAAACACAACAAGAAGTGACATCATG 59
Query 68 --T-CTCCTCTCCAATGGCTCACAATCTCTTTTGCTCTAATTATCTTCCACTCTCTCACG 124
| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
Sbjct 60 TCTCCTCCTCTCCAATGGCTCACAATCTCCTTTGCTCTAATTCTCTTCCACTCTCTTATG 119
Query 125 GTCTCCTCTAGTGTTCTGTCCCACTCAGATCGAGTCACCCGTTTACCCGGTCAACCCCGG 184
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 120 GTCTCCTCTAGTGTTCTGTCCCACTCCGATCGGGTCACCCGTTTACCCGGTCAACCCCGG 179
Query 185 GTCGGATTTCAGCAATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCTCTG 244
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 GTCGGATTCCAGCAATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCCCTG 239
Query 245 TTTTACTACTTCGCCGAGGCAGAAACCAATCCATCCTCTAAACCTCTCGTCCTCTGGCTC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTTTACTACTTCGCCGAGGCAGAAACCAATCCATCCTCTAAACCTCTCGTCCTCTGGCTC 299
Query 305 AATGGAGGACCTGGATGTTCATCTTTGGGCGTTGGGGCATTCTCAGAAAACGGACCATTT 364
||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 300 AATGGAGGACCTGGATGTTCATCTTTGGGTGTTGGTGCATTCTCAGAGAATGGACCATTT 359
Query 365 AGACCAAAAGGACCAATCTTGGTCAAGAATCAGCATAGCTGGAACCAAGAGGCTAATATG 424
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AGACCAAAAGGACCAATCTTGGTCAAGAATCAACATAGCTGGAACCAAGAGGCTAATATG 419
Query 425 TTGTATCTAGAGACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCCCATTAT 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TTGTATTTAGAGACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCCCATTAT 479
Query 485 GAGGGTGTTAATGATAAGATCACTGCAAGAGACAACCTTGTGTTCTTGCAAAGATGGTTT 544
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 GAGGGTGTTAATGACAAGATCACTGCAAGAGACAATCTTGTGTTCTTGCAAAGATGGTTC 539
Query 545 CTCAAATTCCCTCATTACCTCAATCGAAGTCTCTTCATCACTGGTGAAAGTTATGCTGGC 604
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 CTCAAATTCCCTCATTATCTCAATCGAAGTCTCTTCATCACTGGTGAAAGCTATGCTGGC 599
Query 605 CATTATGTTCCTCAACTAGCTGAGCTTATGATTCAGTACAACAAGAAGCACCATTTGTTC 664
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 600 CATTATGTTCCTCAACTAGCTCAGCTTATGATTCAGTACAACAAGAAGCATCATTTGTTC 659
Query 665 AATCTGAGAGGAATTGCTATTGGCAATCCAGTTTTGGAGTTTGCGACAGATTTCAACTCG 724
|||||||||||||||||||||||||| || |||||||||||||| || |||||||| |||
Sbjct 660 AATCTGAGAGGAATTGCTATTGGCAACCCGGTTTTGGAGTTTGCAACGGATTTCAATTCG 719
Query 725 CGAGCTGAGTACTTCTGGTCTCATGGCTTGATATCGGATTCGACTTACAAAATGTTCACA 784
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 720 CGCGCTGAGTACTTCTGGTCTCATGGCTTGATATCTGATTCGACTTACAAAATGTTCACA 779
Query 785 TCTTACTGTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCTTACTGTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATG 839
Query 845 TGCTCTAAGGTGATGAGTCAAGTTAGCACTGAGACGAGTCGATTTGTTGATAAATATGAT 904
|||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 840 TGCTCTAAAGTGATGAGTCAAGTTAGCACTGAGACAAGTCGGTTTGTCGACAAATATGAT 899
Query 905 GTCACTCTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCCCAAT 964
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTTACTCTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCCCAAC 959
Query 965 CAAGTGGGAGAATCTGTGGATGTTTGTGTCGAAGATGAGACGGTCAACTATCTAAACCGA 1024
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 CAAGTGGGAGAATCTGTGGATGTTTGTGTCGAAGATGAGACGGTTAACTATCTAAACCGA 1019
Query 1025 AGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATAGGAGTACGTGAATGGACAGTTTGC 1084
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1020 CGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATTGGAGTACGTGAATGGACAGTTTGC 1079
Query 1085 AGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACGATTAATATCGTAGGG 1144
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 AGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACAATTAATATCGTAGGG 1139
Query 1145 AGCCTTGTTAAAGCTGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTGATC 1204
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCCTTGTTAAAGCAGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTGATC 1199
Query 1205 CCGTTGACAGGAAGTAGAACCTTAGTGAGTAGATTGGCCAAACAATTGGGACTGAGAACA 1264
|| ||||| |||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 1200 CCTTTGACCGGAAGTAGAATTTTAGTCAGCAGATTGGCCAAACAATTGGGACTGAGAACA 1259
Query 1265 AGTGTACCTTATCGAGTCTGGTTTGCAGGCCAACAGGTTGGAGGATGGACTCAAGTCTAT 1324
||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1260 AGTGTACCTTATCGAGTCTGGTTTGCAGGACAACAGGTTGGCGGGTGGACTCAAGTCTAT 1319
Query 1325 GGAAATGTCTTGTCCTTTGCAACAGTGCGAGGAGCTTCACACGAGGTCCCATTCTCACAG 1384
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGGAATGTCTTGTCATTTGCAACGGTGCGAGGAGCTTCACACGAGGTCCCATTCTCACAG 1379
Query 1385 CCTGAGAGATCACTTGTCCTGTTCAAGGCGTTCTTGGACGGCCATCCTCTTCCTGAAGAA 1444
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 CCTGAGAGATCACTTGTTCTGTTCAAGGCGTTCTTGGACGGTCATCCTCTTCCTGAAGAA 1439
Query 1445 TTCTGATATTGTACCATGATCTCTTGACCTTATG 1478
|||||||||| ||||||||| | |||| ||||||
Sbjct 1440 TTCTGATATT-TACCATGATTTGTTGAGCTTATG 1472
Score = 182 bits (98), Expect = 1e-44
Identities = 104/107 (97%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1632 GGGTAAATTACAACAGGAGCTTCTACTTGCATTGTTAAGCATTTGAATTGAAGAGCTATG 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 GGGTAAATTACAACAGGAGCTTCTACTTGCATTGTTAAGCATTTGAATTGAAGAGCTATG 1531
Query 1692 ATTGGTTTCGATAGCATCACGGCTTTGCTTAGCTGCCTTTCATTTTC 1738
|||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1532 ATTGGTTTCGATAGCATCACGGCTACGCTTAGCCGCCTTTCATTTTC 1578
> Ahg482299 jgi|Araly1|482299|fgenesh2_kg.4__1359__AT2G33530.1
Length=1491
Score = 1417 bits (767), Expect = 0.0
Identities = 1145/1327 (86%), Gaps = 27/1327 (2%)
Strand=Plus/Plus
Query 152 GATC-GAGTCACCCGTTTACCCGGTCAACCCCGGGTCGGATTTCAGCAATACTCCGGTTA 210
|||| || |||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 95 GATCGGA-TCACCCGTTTACCCGGTCAACCCCGGGTCGGATTTCAGCAGTACTCAGGTTA 153
Query 211 TGTCACTGTCGACGACAAGAAACAGAGAGCTCTGTTTTACTACTTCGCCGAGGCAGAAAC 270
||||||| | ||||| ||||||||||||||||||||||||||||| || || ||||||||
Sbjct 154 TGTCACTATTGACGATAAGAAACAGAGAGCTCTGTTTTACTACTTGGCTGAAGCAGAAAC 213
Query 271 CAATCC-ATCCTCTAAACCTCTCGTCCTCTGGCTCAATGGAGGACCTGGATGTTCATCTT 329
||| || ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 214 CAAACCCATC-TCTAAACCTCTCGTCCTCTGGCTTAATGGAGGACCGGGATGTTCATCAT 272
Query 330 TGGGCGTTGGGGCATTCTCAGAAAACGGACCATTTAGACCAAAAGGACCAATCTTGGTCA 389
| || ||||| |||||||| || || ||||| ||||||||||||||| || ||||||| |
Sbjct 273 TAGGTGTTGGTGCATTCTCTGAGAATGGACCTTTTAGACCAAAAGGATCAGTCTTGGTGA 332
Query 390 AGAATC-AGCATAGCTGGAACCAAGAGGCTAATATGTTGTATCTAGAGACACCTGTTGGA 448
||||| | || |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 333 GGAATCTA-CACAGCTGGAATCAAGAGGCTAATATGTTGTATCTGGAGACACCTGTTGGA 391
Query 449 GTTGGATTCTCTTATTCAACTCAAAGCTCC-CATTATGAGGGTGTTAATGATAAGATCAC 507
|||||||| |||||| ||||| | |||||| | |||||||||||| ||||||||||||||
Sbjct 392 GTTGGATTTTCTTATGCAACTGAGAGCTCCTC-TTATGAGGGTGTGAATGATAAGATCAC 450
Query 508 TGCAAGAGACAACCTTGTGTTCTTGCAAAGATGGTTTCTCAAATTCCCTCATTACCTCAA 567
||||| |||||| |||||||||||||||| |||||| |||||||||||||| || |||||
Sbjct 451 TGCAAAAGACAATCTTGTGTTCTTGCAAAAATGGTTCCTCAAATTCCCTCAATATCTCAA 510
Query 568 TCGAAGTCTCTTCATCACTGGTGAAAGTTATGCTGGCCATTATGTTCCTCAACTAGCTGA 627
| ||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 511 TAGAAGTCTTTTCATCACTGGTGAAAGCTACGCTGGCCATTATGTTCCTCAGTTAGCTCA 570
Query 628 GCTTATGATTCAGTACAACAAGAAGCACCATTTGTTCAATCTGAGAGGAATTGCTATTGG 687
|||||||||||||||||||||||||||| ||||||| ||||| | ||| |||||||||||
Sbjct 571 GCTTATGATTCAGTACAACAAGAAGCACAATTTGTTTAATCTCAAAGGCATTGCTATTGG 630
Query 688 CAATCCAGTTTTGGAGTTTGCGACAGATTTCAACTCGCGAGCTGAGTACTTCTGGTCTCA 747
|||||| ||| ||||||||||||| |||||||| || ||||| ||||| |||||||||||
Sbjct 631 CAATCCGGTTATGGAGTTTGCGACGGATTTCAATTCACGAGCGGAGTATTTCTGGTCTCA 690
Query 748 TGGCTTGATATCGGATTCGACTTACAAAATGTTCACATCTTACTGTAATTACTCGCGCTA 807
|| |||||||||||| | || |||||||||||||||||||| |||||||||||||| ||
Sbjct 691 CGGGTTGATATCGGATCCAACATACAAAATGTTCACATCTTATTGTAATTACTCGCGATA 750
Query 808 TGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATGTGCTCTAAGGTGATGAGTCAAGT 867
||||||||||||||||||||| ||| |||| ||||||||| |||| ||||||||||||||
Sbjct 751 TGTGAGTGAGTACTATAGAGGATCAGTGTCAAGTATGTGCACTAAAGTGATGAGTCAAGT 810
Query 868 TAGCA-CTGAGACGAGTCGATTTGTTGATAAATATGATGTCACTCTCGATGTTTGCATTC 926
||||| | || || ||| |||| || || |||||||| || ||||| || || |||||||
Sbjct 811 TAGCATC-GAAACAAGTAGATTCGTAGACAAATATGACGTTACTCTTGACGTGTGCATTC 869
Query 927 CCTCTGTGCTATCTCAATCCAAAGTAGT-AAGCCC-CAA--TCAA---GTGGGAGA-ATC 978
|||||||||||||||||||||||||||| || ||| ||| |||| |||||||| | |
Sbjct 870 CCTCTGTGCTATCTCAATCCAAAGTAGTTAA-CCCTCAACCTCAACAAGTGGGAGAGA-C 927
Query 979 TGTGGATGTTTGTGTCGAAGATGAGACGGTCAACTATCTAAACCGAAGAGATGTGCAGGA 1038
|||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |
Sbjct 928 GGTGGATGTTTGTGTAGAAGATGAGACGGTGAACTATCTTAACCGGAGAGATGTGCAAAA 987
Query 1039 AGCTCTTCATGCTCGGCTCATAGGAG-TACGTGAATGGACAGTTTGCAGCAATGTGCTTG 1097
|||||| ||||||||||| | ||| | || ||||| | ||||||||||||||||| |
Sbjct 988 AGCTCTCCATGCTCGGCTTGTCGGAACT-CGCAAATGGGCTGTTTGCAGCAATGTGCTGG 1046
Query 1098 ATTACCAATTGCTTGATGTGGAAATACCAACGATTAATATCGTAGGGAGCCTTGTTAAAG 1157
||||| || | |||||||||||| |||||||||||||||| ||||| || || |||||||
Sbjct 1047 ATTACGAAGTACTTGATGTGGAAGTACCAACGATTAATATTGTAGGAAGTCTGGTTAAAG 1106
Query 1158 CTGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTGATCCCGTTGACAGGAA 1217
|||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 1107 CTGGAGTTCCGGTTCTTGTGTACAGCGGAGATCAAGATTCTGTGATTCCGTTGACTGGAA 1166
Query 1218 GTAGAACCTTAGTGA-GTAGATTGGCCAAACAATTGGGACTGAGAACAAGTGTACCTTAT 1276
||||||| ||||||| | || |||| || | |||||||||||||||| || ||||||
Sbjct 1167 GTAGAACATTAGTGAAGC-GACTGGCTGAAGAGTTGGGACTGAGAACAACCGTGCCTTAT 1225
Query 1277 CGAGTCTGGTTTGCAGGCCAACAGGTTGGAGGATGGACTCAAGTCTATGGAAATGTC-TT 1335
||||| ||||| || || ||||||||||| || |||||||| || ||||| ||| | ||
Sbjct 1226 CGAGTTTGGTTCGCGGGACAACAGGTTGGTGGGTGGACTCAGGTTTATGGGAATA-CATT 1284
Query 1336 GTCCTTTGCAACAGTGCGAGGAGCTTCACACGAGGTCCCATTCTCACAGCCTGAGAGATC 1395
| | |||||||| ||| ||||||| | ||||| || |||||||| ||||| | |||| |
Sbjct 1285 GGCGTTTGCAACTGTGAGAGGAGCAGCCCACGAAGTACCATTCTCGCAGCCCGCGAGAGC 1344
Query 1396 ACTTGTCCTGTTCAAGGCGTTCTTGGACGGCCATCCTCTTCCTGAAGAATTCTGATATTG 1455
|| || |||| || || ||||||| ||| | |||||| |||||||||||||||| ||
Sbjct 1345 GCTCGTGTTGTTTAAAGCATTCTTGGGCGGTCGTCCTCTCCCTGAAGAATTCTGATGTTT 1404
Query 1456 T-ACCAT 1461
| |||||
Sbjct 1405 TCACCAT 1411
> Ahg489176 jgi|Araly1|489176|fgenesh2_kg.6__2310__AT5G23210.1
Length=1839
Score = 71.3 bits (38), Expect = 2e-11
Identities = 42/44 (95%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 284 AAACCTCTCGTCCTCTGGCTCAATGGAGGACCTGGATGTTCATC 327
||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 470 AAACCTCTCCTCCTTTGGCTCAATGGAGGACCTGGATGTTCATC 513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5