BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28130.1 Length=2159 Score E Sequences producing significant alignments: (Bits) Value Ahg473020 jgi|Araly1|473020|fgenesh2_kg.1__2974__AT1G28130.1 3384 0.0 > Ahg473020 jgi|Araly1|473020|fgenesh2_kg.1__2974__AT1G28130.1 Length=2165 Score = 3384 bits (1832), Expect = 0.0 Identities = 2062/2172 (95%), Gaps = 20/2172 (1%) Strand=Plus/Plus Query 1 ACCAAAAACCAACCTTCAAGAACAGAGAAGAAGTGATTCTCTAAACAACAAAAATAAAAT 60 ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 ACCAAAATCCAACCATCAAGAACAGAGAAGAAGTGATTCTCTCAACAACAAAAATAAAAT 60 Query 61 -AAAACTCTTCTTTCTCTA-TTTCTGTTGAAGGT-ACCTCATCATTGCAACACAAACTTA 117 ||||||| |||||||||| ||| | || | | | ||||||||||||||||||||||| Sbjct 61 AAAAACTC-TCTTTCTCTATTTTTTCTT--ACTTGAACTCATCATTGCAACACAAACTTA 117 Query 118 AAGCTTTGTTTGTGTCTGCTTTCAGACAATGATACCAAGTTACGACCCAAATGATACAGA 177 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 AAACTTTGTTTGTGTCTGCTTTCAGACAATGATACCAAGTTACGACCCAAATGATACAGA 177 Query 178 GGCTGGTCTCAAGCTTCTCGAGGATCTGACAACAAATGCAGAGGCTATCCAACAACAAGT 237 ||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||| Sbjct 178 AGCTGGCCTCAAGCTTCTCGATGATCTGACAACAAATGCAGAGACTATTCAACAACAAGT 237 Query 238 TCTTCACCAAATACTCTCTCAAAACTCTGGAACTCAATATCTCCGAGCATTTCTGGACGG 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 238 TCTTCACCAAATACTCTCTCAAAACTCTGGAACTCAATATCTCCGAGCATTTCTCGATGG 297 Query 298 AGAAGCCGACAAGAATCAACAAAGCTTCAAAAACAAAGTCCCTGTGGTGAATTATGACGA 357 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 298 AGAATCCGACAAGAATCAACAAAGCTTCAAAAACAAAGTCCCTGTGGTGAATTACGACGA 357 Query 358 CGTAAAGCCTTTCATTCAACGAATCGCTGATGGAGAATCATCTGATATCGTCTCTGCTCA 417 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CATAAAGCCTTTCATTCAACGAATCGCTGATGGAGAATCATCTGATATCGTCTCTGCTCA 417 Query 418 GCCCATCACAGAACTCCTCACTAGTTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCC 477 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 418 GCCCATCACAGAACTCCTCACTAGCTCGGGGACTTCTGCAGGAAAGCCGAAGTTGATGCC 477 Query 478 TTCTACAGCTGAAGAATTGGAAAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCAT 537 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 478 TTCTACAGCTGAAGAATTGGATAGGAAGACATTTTTCTACAGCATGCTTGTGCCTATCAT 537 Query 538 GAACAAATATGTGGATGGGCTAGATGAGGGAAAAGGGATGTATCTTCTATTCATAAAACC 597 ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 538 GAACAAATATGTGAATGGGCTAGATGAAGGAAAAGGGATGTATCTTCTATTCATAAAACC 597 Query 598 AGAGATCAAGACTCCGTCAGGTCTAATGGCCCGTCCTGTTTTGACCAGCTACTACAAAAG 657 ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| Sbjct 598 AGAGATCAAGACTCCTTCAGGTCTAATGGCGCGTCCTGTTTTGACTAGCTACTACAAAAG 657 Query 658 TCAACATTTCAGAAACAGACCATTCAACAAGTACAACGTCTACACTAGCCCTGACCAGAC 717 ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 658 TCAACATTTTAGGAACAGACCCTTCAACAAGTACAACGTCTACACTAGCCCTGACCAGAC 717 Query 718 CATTCTTTGTCAAGACAGCAAGCAGAGCATGTACTGTCAGCTTCTCTGCGGTCTAGTACA 777 ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct 718 CATTCTTTGTCAAGACAGCAAACAGAGCATGTACTGTCAGCTTCTCTGCGGTTTAGTCCA 777 Query 778 GCGATCTCATGTCCTAAGAGTCGGAGCTGTCTTTGCCTCTGCCTTTCTTCGAGCAGTCAA 837 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 778 GCGATCTCATGTCCTAAGAGTCGGAGCTGTCTTTGCCTCTGCCTTCCTTCGAGCGGTCAA 837 Query 838 GTTCTTGGAGGATCATTACAAAGAGCTTTGCGCTGACATTAGAACCGGTACTGTCACTAG 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 GTTCTTGGAGGATCATTACAAAGAGCTTTGCGCTGACATTAGAACCGGTACTGTCACTAG 897 Query 898 CTGGATCACTGACTCATCCTGCAGAGACTCGGTCTTGTCGATCCTTAATGGCCCAAATCA 957 |||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 898 CTGGATAACTAACTCATCCTGCAGAGACTCGGTCTTGTCGATCCTTAACGGCCCAAATCA 957 Query 958 AGAATTGGCTGATGAAATTGAGAGTGAGTGCGCTGAAAAGTCGTGGGAAGGAATCTTGAG 1017 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 958 AGAATTGGCTGATGAAATTGAGAGTGAGTGTGCTGAAAAGTCGTGGGAAGGAATCTTGAG 1017 Query 1018 GAGGATATGGCCTAAGGCTAAATATGTTGAGGTGATTGTGACTGGTTCGATGGCTCAATA 1077 |||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 1018 GAGGATCTGGCCTAAGGCTAAGTACGTTGAGGTGATTGTGACGGGTTCGATGGCTCAATA 1077 Query 1078 CATTCCGACACTAGAGTTTTATAGCGGAGGTTTACCGTTGGTTTCAACGATGTATGCTTC 1137 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1078 CATTCCCACACTCGAGTTTTATAGCGGAGGTTTACCATTGGTTTCAACGATGTATGCTTC 1137 Query 1138 CTCTGAGTGTTACTTTGGTATCAACCTTAATCCGTTGTGTGATCCTGCCGATGTTTCCTA 1197 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 1138 CTCTGAGTGTTACTTTGGTATCAACCTCAATCCGTTGTGTGATCCAGCCGATGTTTCCTA 1197 Query 1198 CACGCTTCTTCCTAACATGGCTTACTTCGAGTTCTTGCCCGTCGACGACAAATCCCACGA 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CACGCTTCTTCCTAACATGGCTTACTTCGAGTTCTTGCCCGTCGACGACAAATCCCACGA 1257 Query 1258 AGAGATTCACTTTGCAACTCACTCCAACACCGATGATGATGATGATGCTCTCAAGGAAGA 1317 ||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||| Sbjct 1258 AGAGATTCACTTTGCGTCGCATTCCAACACGGATGATGATGATGATGCTCTCAAGGAAGA 1317 Query 1318 TCTCATCGTCAATCTTGTTAATGTCGAAGTCGGTCAATACTACGAAATCGTCATCACTAC 1377 ||| || || |||||||||| ||| |||||||||||||||||||||| ||||| ||||| Sbjct 1318 TCTTATTGTTGATCTTGTTAACGTCAAAGTCGGTCAATACTACGAAATTGTCATTACTAC 1377 Query 1378 ATTCACAGGTTTGTACAGATACAGAGTAGGCGATATTCTAAAAGTGACGGGTTTCCACAA 1437 |||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 1378 ATTCACAGGTTTATACAGATACAGAGTTGGCGATATCCTAAAAGTGACAGGTTTCCACAA 1437 Query 1438 CAAAGCGCCTCAATTCCGTTTCGTGCAGCGAAGAAACGTTGTACTAAGCATCGACACTGA 1497 |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || Sbjct 1438 CAAAGCGCCTCAATTCCGTTTCGTCCAGCGAAGAAACGTTGTACTAAGCATTGACACCGA 1497 Query 1498 CAAAACGAGCGAAGAAGATCTACTAAACGCAGTGACACAAGCTAAACTAAACCATCTTCA 1557 |||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 1498 CAAAACGAGCGAGGAAGATCTACTAAATGCGGTGACACAAGCTAAACTCAACCATCTTCA 1557 Query 1558 ACATCCTTCAAGCCTCTTGCTCACGGAGTACACAAGCTACGCAGACACGTCATCAATCCC 1617 ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct 1558 ACACCCTTCAAGCCTCTTGCTCATGGAGTACACAAGCTACGCGGACACGTCATCAATCCC 1617 Query 1618 AGGGCATTACGTGCTCTTCTGGGAGCTAAAGCCACGTCACAGCAATGACCCACCAAAGCT 1677 ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1618 GGGGCATTACGTGCTCTTCTGGGAGCTAAAGCCACGTCACAGTAACGACCCACCAAAGCT 1677 Query 1678 TGACGACAAGACAATGGAGGATTGTTGCTCTGAGGTTGAGGATTGTTTGGATTACGTCTA 1737 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1678 AGACGACAAGACAATGGAAGATTGTTGCTCTGAGGTTGAGGATTGTTTGGATTACGTCTA 1737 Query 1738 CAGGAGATGCAGGAACAGGGACAAGTCGATTGGGCCATTGGAGATAAGAGTGGTGAGTTT 1797 ||| |||||||||||||| || || |||||||| |||||||||||||||||||||||||| Sbjct 1738 CAGAAGATGCAGGAACAGAGATAAATCGATTGGACCATTGGAGATAAGAGTGGTGAGTTT 1797 Query 1798 GGGCACGTTTGATTCGTTAATGGATTTTTGTGTCTCACAAGGATCATCTTTGAATCAGTA 1857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1798 GGGCACGTTTGATTCGTTAATGGATTTTTGTGTCTCACAAGGATCATCTTTGAATCAGTA 1857 Query 1858 TAAGACTCCAAGATGTGTTAAATCTGGAGGAGCTCTTGAGATTCTTGATTCCAGAGTTAT 1917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 TAAGACTCCAAGATGTGTTAAATCTGGAGGAGCTCTTGAGATTCTTGATTCCAGAGTTAT 1917 Query 1918 TGGGAGGTTCTTCAGTAAGAGAGTTCCTCAATGGGAACCACTTGGTTTAGATTCTTAGAC 1977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 TGGGAGGTTCTTCAGTAAGAGAGTTCCTCAATGGGAACCACTTGGTTTAGATTCTTAGAC 1977 Query 1978 TTTACTTCTTTTTCTTTAATGTATGATTAAAGTCTTGATTTTATAAGTATAAGATCTTCA 2037 ||||||||||||| ||||||||||||||||||||||||||| | | |||||||| ||||| Sbjct 1978 TTTACTTCTTTTT-TTTAATGTATGATTAAAGTCTTGATTT-A-A-GTATAAGAACTTCA 2033 Query 2038 TTTGTTAAGTTGCTAATTGGTGTTTCtttttttAATT----G-TTAAGCT-TTT-GTCTC 2090 ||||||||||||||||||||||||| ||||||| || | || ||| ||| ||||| Sbjct 2034 TTTGTTAAGTTGCTAATTGGTGTTTTTTTTTTTTTTTTAAAGCTTTTGCTCTTTTGTCTC 2093 Query 2091 TTTTGTAACAAA---CTTTCAGCAAAGTCCTCTCATTTTGTGAATGTATACTTTTGTGTC 2147 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2094 TTTTGTAACAAATTACTTTCAGCAAAGTCCTCTCATTTTGTGAATGTATACTTTTGTGTC 2153 Query 2148 TCTTTCTTTATT 2159 |||||||||||| Sbjct 2154 TCTTTCTTTATT 2165 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81246492585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5