BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28140.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473022 jgi|Araly1|473022|fgenesh2_kg.1__2976__AT1G28140.1 1548 0.0
> Ahg473022 jgi|Araly1|473022|fgenesh2_kg.1__2976__AT1G28140.1
Length=1010
Score = 1548 bits (838), Expect = 0.0
Identities = 956/1013 (94%), Gaps = 8/1013 (1%)
Strand=Plus/Plus
Query 1 AAACCGGTACGACTTCTGTGAATTCGATTCGTGACTTATGGCCTCGCGTTTGCTATCGAC 60
||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||
Sbjct 1 AAACCGGTACGACCTCTGTGAATTCAATTCGTGACTAATGGCCTCGCGTTTGTTATCGAC 60
Query 61 GACGACACTCGTCACACCGCCGGCTTA-TTTCAACAAATCGCCGGCGTTTTTAACGGCCA 119
|||||||||| |||||||||||| ||| | |||||||||||||||||| ||||||||| |
Sbjct 61 GACGACACTCATCACACCGCCGG-TTACTCTCAACAAATCGCCGGCGTGTTTAACGGCGA 119
Query 120 GAGTTGGGGTGAGAAGAGGAAGGGCTAACGTTAAGGCTGTGAGCAATAGTTCGCAAGGAG 179
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 GAGTTGGGGTGAGAAGAGGAAGGGTTAACGTTAGGGCTGTGAGCAATAGTTCGCAAGGAG 179
Query 180 CCGTCGATGGAACCGTTTACAAAGGTGTTTACGGTCCTTGGACCATTGACCAAGCCGATG 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 CCGTCGATGGAACCGTTTACAAAGGTGTTTACGGTCCCTGGACCATTGACCAAGCCGATG 239
Query 240 TCAAAGAGGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAAAGAGGTTATTTTGTACAGATCAGGACTAGTAACTGCTGCTGCATCTTTTGTAGCTG 299
Query 300 CTTCTTCTGCTGCCTTTTTACCAGGAGACTCTTGGTTAAGTGAAACAATCAAGCAAAACC 359
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CTTCTTCTGCTGCATTTTTACCAGGAGACTCTTGGTTAACTGAAACAATCAAGCAAAACC 359
Query 360 ATGATCTGTTTTACTTTGTTGGTGCTAGTGGTTTGGGGCTATCTCTGTTTCTAATACATA 419
||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 360 ATGATTTGTTTTACTTTGTTGGTGCTAGTGGTTTGGGGCTATCTCTGTTTCTTATTCATA 419
Query 420 TATATGTTACGGAGATTAAGAGGACTCTTCAAGCTTTATGGGCACTTGGTTTTGTTGGTT 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATATGTTACTGAGATTAAGAGGACTCTTCAAGCTTTATGGGCACTTGGTTTTGTTGGTT 479
Query 480 CTTTCGCTACTTACGCAGCCCTTGCTAGACCAGCTGGTGATAACTTGGTTCATTATGTCG 539
| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CGTTGGCTACTTACGCAGCCCTTGCCAGACCAGCTGGTGATAACTTGGTTCATTATGTCG 539
Query 540 TTGATCATCCATCCGCTGTTTGGTTTGTTGGTCCCCTATTCGCATCTCTCACAGGACTCG 599
|||||||||| || ||||||||||||||||||||||| |||||| ||||||| || || |
Sbjct 540 TTGATCATCCGTCTGCTGTTTGGTTTGTTGGTCCCCTTTTCGCAGCTCTCACTGGGCTTG 599
Query 600 TTTTCAAAGAAGGTCTTTGTTATGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATAC 659
|||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTTTAAAGAAGGTCTCTGCTACGGAAAGCTAGAAGCTGGCCTTCTTACATTCATCATAC 659
Query 660 CTTCAGTTCTTCTTGGGCATTTGAGTGGTCTGATGAATGATGAGGTAAAACTGGTGTTGC 719
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 660 CTTCAGTTCTTCTTGGGCATTTGAGCAGTGTGATGAATGATGAGGTAAAACTGGTGTTGT 719
Query 720 TAGGAACATGGATGGCTCTCTTTCTAGTATTTGCTGGAAGAAAGTTTACTCAGCCTATTA 779
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 720 TAGGAACATGGATGGCGCTCTTTCTAGTATTTGCTGGAAGAAAATTTACTCAGCCTATTA 779
Query 780 AGGATGATATCGGAGATAAATCTGTTTTCACGTTCATGTCCCTTTCTGATGATGAAAAGA 839
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 780 AGGATGATATCGGAGATAAATCTGTTTTCACGTTCATGTCCCTCTCTGAAGATGAGAAGA 839
Query 840 AGGCTATAGTTGAAAAGCTCGAGCAAGAAAAGTTGGGGTAAGAATCT-GAATGATAGTGG 898
|||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 840 AGGCTATAGTTGAAAAACTCGAGCAAGAAAAGTTGGGGTAAGACTCTTGAATGATAGTGA 899
Query 899 AATGTTTTAAGCATCTTCAAGAACAGGTAAATATTTTGTATCCATAGATTCTATT-TA-- 955
|||||||||||||||||||||| |||||||||| |||||||||||||||||| | ||
Sbjct 900 AATGTTTTAAGCATCTTCAAGATTAGGTAAATATCTTGTATCCATAGATTCTACTATAAA 959
Query 956 CCACTGAGGAGAAATGCTACCATAAACACAGTTTGTAGATTGTGATTAGTAGC 1008
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||
Sbjct 960 CCACTGAGGAGAGATGCTACTATAAACA--GTTTGTAGATTGTGATTAGTAGC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5