BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G28150.1

Length=613
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473023 jgi|Araly1|473023|fgenesh2_kg.1__2977__AT1G28150.1         553    6e-157


> Ahg473023 jgi|Araly1|473023|fgenesh2_kg.1__2977__AT1G28150.1
Length=552

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 421/474 (89%), Gaps = 32/474 (7%)
 Strand=Plus/Plus

Query  43   AGgaagaagaagaa-gaagagaTGGGTTTTGTCTTAATCTGTACTTGTCCTCCG---TCC  98
            |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||   |||
Sbjct  22   AGGAAGAAGAAGAAGGAAGGGATGGGTTTTGTCTTAACCTGTACTTGTCCTCCGTCCTCC  81

Query  99   TCGGGTGTCGTCGTCTCTCAGCTTCACCATCACCAGTTCTCCGCCGGAGTCAAAAGCAAT  158
            |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct  82   TCGCTTGTCGTCGTCTCTCAGCTTCACCATCACCAGTTCTCCGCCGGAGTCAAAAGCTGC  141

Query  159  GAAC--T--T-T-G------GTTTCGTCCGACTCGT---AGAACCCTAATTTCGAAATCA  203
            ||||  |  | | |      ||||  ||||||||||   |||||||||||||||||||||
Sbjct  142  GAACTTTCCTCTCGTCCTCAGTTTTATCCGACTCGTAGAAGAACCCTAATTTCGAAATCA  201

Query  204  TCTTGTTTCAATCTCCCTCAAGAACCCATTCTCTCCGAAGCTCTCAAGGAGCCAATTGCA  263
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  202  TCTTGTTTCAATCTCCCTCAAGAACCCATTCTCTCCGAGGCTCTCAAGGAGCCAATTGCA  261

Query  264  TTCTTGGGTGGGATGTTTGCTGGACTT-CTAAGACTTGATCTAAACGAAGAGCCGCTCAA  322
            || |||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  262  TTTTTGGGTGGTATGTTTGCTGGA-TTGCTAAGACTTGATCTAAACGAAGAGCCGCTCAA  320

Query  323  GGATTGGGTGACGCGAACAGTTGAAGCCTCGGGTATTACAGAAGAAGAAGTTGATGCAGA  382
            ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct  321  GGATTGGGTGACGCGCACAGTTGAAGCCTCAGGTATTACAGAAGAAGATGTTGATGCAGA  380

Query  383  TGGGGTTGTTTCCAATGATGAAGACTCTCCTCAACAGATAGAGATTGAATGAGGTGT-C-  440
            |||| | ||||| |||||||||||||||||||||||||||||||||||||||||| | | 
Sbjct  381  TGGGATGGTTTCAAATGATGAAGACTCTCCTCAACAGATAGAGATTGAATGAGGTTTGCG  440

Query  441  TT--GGTTCTGC-A-G--TA---TTTACCATCTGCAAGGACCTTTTGTATGTAA  485
            ||  |||||||| | |  |    |||||||||||||||| ||||||||||||||
Sbjct  441  TTTTGGTTCTGCGATGACTCGGCTTTACCATCTGCAAGGTCCTTTTGTATGTAA  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22416275196


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5