BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28160.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473024 jgi|Araly1|473024|fgenesh2_kg.1__2978__AT1G28160.1 1166 0.0
> Ahg473024 jgi|Araly1|473024|fgenesh2_kg.1__2978__AT1G28160.1
Length=727
Score = 1166 bits (631), Expect = 0.0
Identities = 700/733 (95%), Gaps = 6/733 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTGCTCTAGATCAAAAAAGAGTCATAGG 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTCCTCTAGATCAAAAAAGAGTCATAGG 60
Query 61 CAAAAGCAGCAACAACCGCAGCCACAGCCACAACAACATATTGAAGAAATAAAGTATGTA 120
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 61 CAAAAGCAGCAACAACCGCAACCGCAACCACACCAACATATTGAAGAAATAAAGTATGTA 120
Query 121 GGAGTGAGGAGGAGGCCATGGGGAAGATATGCAGCTGAGATAAGAAACCCGACGACGAAA 180
|| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 121 GGGGTGAGGAGGAGGCCATGGGGAAGATACGCAGCTGAAATAAGAAACCCGACTACGAAA 180
Query 181 GAGAGGTATTGGCTAGGTACTTTTGACACGGCCGAGGAGGCTGCATTGGCTTATGATAGA 240
||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||
Sbjct 181 GAGAGGTATTGGCTAGGTACTTTTGACACAGCCGAAGAAGCTGCATTGGCCTATGATAGA 240
Query 241 GCCGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300
Query 301 CGTGGCTCCTCAGTAACTTCCTTTGTGTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 CGTGGCTCCTCAGTAACTTCATTTGTCTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360
Query 361 TTATTCAACCCTCCAAGCCAACTAGAAGCTACTAACAGCAACAATAACAACAATAACAAT 420
|||||||||||||||||||||||||| || |||||||| ||| ||||||||| | |
Sbjct 361 ATATTCAACCCTCCAAGCCAACTAGAAATTATTAACAGCAGCAACAACAACAAT--C--T 416
Query 421 CTCTACTCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTCT--TCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 474
Query 481 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCATTGTGATCAT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 475 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCACTGTAATCAT 534
Query 541 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACC 594
Query 601 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGCTTGATGGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 595 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGTTTGATGGC 654
Query 661 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTACCCTCC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 655 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTATCCTCC 714
Query 721 ACATTCTTCTACC 733
|||||||||||||
Sbjct 715 ACATTCTTCTACC 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5