BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28160.1 Length=738 Score E Sequences producing significant alignments: (Bits) Value Ahg473024 jgi|Araly1|473024|fgenesh2_kg.1__2978__AT1G28160.1 1166 0.0 > Ahg473024 jgi|Araly1|473024|fgenesh2_kg.1__2978__AT1G28160.1 Length=727 Score = 1166 bits (631), Expect = 0.0 Identities = 700/733 (95%), Gaps = 6/733 (1%) Strand=Plus/Plus Query 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTGCTCTAGATCAAAAAAGAGTCATAGG 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 ATGGAGTTCAATGGTAATTTGAATGCCGGTTCTTCCTCTAGATCAAAAAAGAGTCATAGG 60 Query 61 CAAAAGCAGCAACAACCGCAGCCACAGCCACAACAACATATTGAAGAAATAAAGTATGTA 120 |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||| Sbjct 61 CAAAAGCAGCAACAACCGCAACCGCAACCACACCAACATATTGAAGAAATAAAGTATGTA 120 Query 121 GGAGTGAGGAGGAGGCCATGGGGAAGATATGCAGCTGAGATAAGAAACCCGACGACGAAA 180 || |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 121 GGGGTGAGGAGGAGGCCATGGGGAAGATACGCAGCTGAAATAAGAAACCCGACTACGAAA 180 Query 181 GAGAGGTATTGGCTAGGTACTTTTGACACGGCCGAGGAGGCTGCATTGGCTTATGATAGA 240 ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||| Sbjct 181 GAGAGGTATTGGCTAGGTACTTTTGACACAGCCGAAGAAGCTGCATTGGCCTATGATAGA 240 Query 241 GCCGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GCTGCACGGTCCATAAGAGGCTTGACTGCTCGAACCAACTTTGTCTACTCCGATATGCCT 300 Query 301 CGTGGCTCCTCAGTAACTTCCTTTGTGTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 301 CGTGGCTCCTCAGTAACTTCATTTGTCTCTCCTGATGAATCCCAACGTTTCATTTCCGAG 360 Query 361 TTATTCAACCCTCCAAGCCAACTAGAAGCTACTAACAGCAACAATAACAACAATAACAAT 420 |||||||||||||||||||||||||| || |||||||| ||| ||||||||| | | Sbjct 361 ATATTCAACCCTCCAAGCCAACTAGAAATTATTAACAGCAGCAACAACAACAAT--C--T 416 Query 421 CTCTACTCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 480 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 CTCT--TCATCGACCAACAACCAAAACCAGAACTCTATTGAGTTCTCATACAATGGGTGG 474 Query 481 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCATTGTGATCAT 540 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 475 CCTCAGGAGGCTGAATGTGGTTATCAATCTATAACCAGTAATGCTGAGCACTGTAATCAT 534 Query 541 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACG 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 GAGCTTCCACCTCTTCCTCCCAGTACTTGTTTTGGAGCTGAACTGAGGATTCCGGAGACC 594 Query 601 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGCTTGATGGC 660 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 595 GATAGCTATTGGAATGTTGCGCATGCAAGCATAGACACGTTTGCCTTCGAGTTTGATGGC 654 Query 661 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTACCCTCC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 655 TTTGTGGATCAAAACAGTCTTGGTCAGAGTGGAACAGAAGGGTTTAATTCTTTATCCTCC 714 Query 721 ACATTCTTCTACC 733 ||||||||||||| Sbjct 715 ACATTCTTCTACC 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27181639821 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5