BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28170.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912645 jgi|Araly1|912645|Al_scaffold_0001_2899 1321 0.0
Ahg921865 jgi|Araly1|921865|scaffold_103146.1 1009 0.0
> Ahg912645 jgi|Araly1|912645|Al_scaffold_0001_2899
Length=984
Score = 1321 bits (715), Expect = 0.0
Identities = 902/991 (91%), Gaps = 17/991 (2%)
Strand=Plus/Plus
Query 1 ATGGATGAGACCAAGATCCCAAAGAAACTGCAAAGCGATGACGAAGAAAACATAAGTTTG 60
|||||||||||| ||||||||||||||||||||| ||| || ||||||| ||||||||||
Sbjct 1 ATGGATGAGACCGAGATCCCAAAGAAACTGCAAAACGAGGATGAAGAAACCATAAGTTTG 60
Query 61 ATTTCTTCACTTCCCTTTGACGTAGATTTCGACAGCACGAAGCTCTTCAAATACCAAGGA 120
|| |||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||
Sbjct 61 ATCTCTTCACTTCCCTTAGACGTAGATTTCGATGGCACGAAGCTGTTCAAGTACCAAGGA 120
Query 121 TGTTGGTACGACGACAAAACTCTGCAAGGAGTCCTCAATTTTCAAAGAGGTTTCGAGCCA 180
| ||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 121 TATTGGTACAACGACAAAACCCTGCAAGGAGTCCTCCATTTCCAAAGAGGTTTCGAGCCA 180
Query 181 CAAGACACCGATATAATTATTGCTTCGTTCCCCAAATCTGGCACTACTTGGCTCAAAGCT 240
|||||| || ||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 AAAGACATGGACATAATCATTGCCTCGTTCCCCAAATCTGGTACTACTTGGCTCAAAGCT 240
Query 241 CTCACGGTAGCTCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCTCTT 300
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCACCGTAGATCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCTCTT 300
Query 301 CTACTTGATAATCCTCATGGACTGGTACCATTCCTCGAGCTCAGGCTGTTCACTGAGACC 360
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 301 CTCCTTGATAATCCTCATGGCCTTGTACCATTCCTCGAGCTCAGGCTGTTCACGGAGACC 360
Query 361 TCGAAACCAGATCTGACCAGTATCTCATCGTCGCCGAGGTTATTTTCGACTCATGTGGCG 420
||||||||||||||||||| ||||||||| || | ||||| || ||||||||| ||| |
Sbjct 361 TCGAAACCAGATCTGACCACTATCTCATCATCACTAAGGTTGTTCTCGACTCATATGGGG 420
Query 421 TTCCAAACGCTGCGAGAGGCTCTCAAAAACTCTCCTTGTAAGATCGTTTACGTGTGGAGG 480
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 421 TTCCAAACACTGCGAGAGGCTCTCAAGAACTCTCCTTGTAAGATCGTGTACGTGGGGAGG 480
Query 481 AACGTGAAAGACGTACTGGTGTCGTTTTGGTATTTC-AACAGCGCAAAACTAAAGATAGA 539
||| |||||||||||||||||||||||||||| | | ||| ||||| |||||||||||||
Sbjct 481 AACATGAAAGACGTACTGGTGTCGTTTTGGTA-TACTAACTGCGCACAACTAAAGATAGA 539
Query 540 AGAGGAGAGAAGCATTTTGGATTC---AATGTTCGAGTCCTTTTGCAGAGGAGTTATCAA 596
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 AGTGGAGAGAAGCATTTTGGATTCAATAATGTTCGAGTCCTTTTGCAGAGGAGTTATCAA 599
Query 597 TTACGGACCATCCTGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAGACTCCAA 656
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTACGGATCATCATGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAGACTCCAA 659
Query 657 GAATGTGCTTTTCTTGAAGTACGAGGAGTTAAAAACAGAA-CCTCGCG-TGCAGCTGAAG 714
| |||||||||||||||||||||||||||| |||| || | ||||| | | ||||| ||
Sbjct 660 GTATGTGCTTTTCTTGAAGTACGAGGAGTTGAAAA-AGGAGCCTCGTGAT-CAGCTCAAT 717
Query 715 AGACTTGCCGAGTTCTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGGGGATCAGTG 774
| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct 718 ATACTTGCCGAGTTCTTGGGTTGTCCTTTTACAGTGGAAGAAGAAGAGAGCGGATCAGTG 777
Query 775 GAAGAGAT-CTTGGACCTTTGCTCATT-GCGTAACTTGAAGAATTTGGAGATCAACAAGA 832
|||||||| || | ||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 778 GAAGAGATACTAG-ACCTTTGCTCATTTG-GTAACCTGAAGAATTTGGAGATCAACAAGA 835
Query 833 CCGGAAAAACGCTTAGGGGGGCCGATCACAAGAttttttttCGTAAAGGGGAAGTCGGTG 892
|||||||||| |||| ||| |||| ||||||| |||||||||| |||||||||||||||
Sbjct 836 CCGGAAAAACTCTTAAAGGGCCCGAGCACAAGAATTTTTTTCGTGAAGGGGAAGTCGGTG 895
Query 893 ACTCGAAGAATCATCTGACTCCTGAAATGGAGAAGATAATTGACATGATCA-CTGAGGAG 951
|||| |||||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 896 ACTCCAAGAATTATCTGACTCCTGAAATGGAGAAGATAATTGACATGATTATC-GAGGAG 954
Query 952 AAATTT-GAAGGTTCGGATTTGAAATTCTGA 981
|||||| || ||||||||||| |||||||||
Sbjct 955 AAATTTCGA-GGTTCGGATTTAAAATTCTGA 984
> Ahg921865 jgi|Araly1|921865|scaffold_103146.1
Length=1015
Score = 1009 bits (546), Expect = 0.0
Identities = 849/993 (85%), Gaps = 30/993 (3%)
Strand=Plus/Plus
Query 1 ATGGATGAGACCAAGATCCCAAAGAAACTGCAAAGCGATGACGAAGAAAACATAAGTTTG 60
|||||||||| ||||||||||||| ||| | || || ||||||||| || ||||||||
Sbjct 21 ATGGATGAGAAGGAGATCCCAAAGAACCTGGAGAGAGACGACGAAGAATACGTAAGTTTG 80
Query 61 ATTTCTTCACTTCCCTT-TGACGTAGATTTCGACAGCACGA-AGCTCTTCAAATACCAAG 118
|| ||||||||| |||| || ||||||||| || ||| |||| ||||| |||||||
Sbjct 81 ATCTCTTCACTT-CCTTCAGATATAGATTTCGTTGGC-CGAGAGCTGTTCAAGTACCAAG 138
Query 119 GATGTTGGTACGACGACAAAACT-CTGCAAGGAGTCCTCAATTTTCAAAGAGGTTTCGAG 177
|| |||||||| | |||||| | |||||| | | ||||||| ||| |||||||||||
Sbjct 139 AATCTTGGTACGGCAACAAAA-TGTTGCAAGCAATAATCAATTTCCAACGAGGTTTCGAG 197
Query 178 CCACAAGACACCGATATAATTATTGCTTCGTTCCCCAAATCTGGCACTACTTGGCTCAAA 237
||||||||||| || ||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 198 CCACAAGACACGGACATAATCATTGCTTCGTTCCCCAAAGCCGGCACTACTTGGCTCAAA 257
Query 238 GCTCTCACGGTAGCTCTCCTCGAGAGATCCAAACAGAAACACTCTTCTGATGATCATCCT 297
|||||||| ||||| ||||| ||||||| | | |||||||||||||||| |||||||
Sbjct 258 GCTCTCACTGTAGCCCTCCTTGAGAGAT-C---C--AAACACTCTTCTGATGCTCATCCT 311
Query 298 CTTCTACTTGATAATCCTCATGGA-CTGGTACCATTCCTCGAGCTCAG-GCTGTTCACTG 355
|||| |||||||||||||||| | || ||||||||| |||||||| | |||| | |
Sbjct 312 CTTCGACTTGATAATCCTCAT-AACCTAGTACCATTCTTCGAGCTC-GATCTGTACGCCA 369
Query 356 AGACCTCGAAACCAGATCTGACCAGTATCTCATCGTCGCCGAGGTTATTTTCGACTCATG 415
| | ||||||||||||| |||||| | ||||||| | |||||| |||| |||||||||
Sbjct 370 AAAGCTCGAAACCAGATATGACCAATTTCTCATCAACCCCGAGGGTATTCGCGACTCATG 429
Query 416 TGGCGTTCCAAACGCTGCGAGAGGCTCTCAAAAACTCTCCTTGTAAGATCGTTTACGTGT 475
|| || |||| ||||||| ||| |||||||| |||||| |||||||||| || |||||||
Sbjct 430 TGCCGCTCCACACGCTGCAAGAAGCTCTCAAGAACTCTTCTTGTAAGATTGTGTACGTGT 489
Query 476 GGAGGAACGTGAAAGACGTACTGGTGTCGTT-TTGGTATTTCAACAG-C-GCA-AAACTA 531
|||||||||||||||| || ||||||| || |||||||||| | || | ||| | |
Sbjct 490 GGAGGAACGTGAAAGATGTTTTGGTGTC-TTATTGGTATTTC-A-AGTCTGCACTGA-TG 545
Query 532 AAGATAGAAG-AGGAGAGAAGCATT-TTGGATTCAATGTTCGAGTCCTTTTGCAGAGGAG 589
||| |||||| | ||||||||| || ||||| ||||||||||| || |||||||||||||
Sbjct 546 AAGGTAGAAGCA-GAGAGAAGC-TTGTTGGAGTCAATGTTCGAATCGTTTTGCAGAGGAG 603
Query 590 TTATCAATTACGGACCATCCTGGGAACATGTCTTGAACTATTGGAGAGCAAGCTTGGAAG 649
||| | || |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 604 TTAGCTATGGCGGACCATTCTGGGAACATGTCTTGAGCTATTGGAGAGGAAGCTTGGAAG 663
Query 650 ACTCCAAGAATGTGCTTTTCTTGAAGTACGAGGAGTTAAAAACAGAACCTCGCGTGCAGC 709
| ||| |||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 664 AATCCCAGAATGTGCTTTTCTTGAAGTACGAGGATTTGAAAACAGAACCTCGTGTGCAGC 723
Query 710 TGAAGAGACTTGCCGAGTTCTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGGGGAT 769
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 724 TTAAGAGACTTGCCGAGTTTTTGGATTGTCCTTTTACGGTGGAAGAAGAAGAGAGCGGAT 783
Query 770 CAGTGGAAGAGATCTTGGACCTTTGCTCATTGCGTAACTTGAAGAATTTGGAGATCAACA 829
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 784 CTGTGGAAGAGATCTTGGAACTTTGTTCATTGCGTAACTTGAAGAATTTGGAGATCAACA 843
Query 830 AGACCGGAAAAACGCTTAGGGGG-GCCGATCACAAGAttttttttCGTAAAGGGGAAGTC 888
| | ||| | |||| | | | || | ||||||||||| |||||| |||||||||||||||
Sbjct 844 AAATCGGGATAACG-TCAAGAGGAGTCGATCACAAGAATTTTTTCCGTAAAGGGGAAGTC 902
Query 889 GGTGACTCGAAGAATCATCTGACTCCTGAAATGGAGAAGATAATTGACATGATCACTGAG 948
||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 903 GGTGACTCGAAGAATTATCTGACTCCTGAAATGGAGAAGAGGATTGACATGATCACCGAG 962
Query 949 GAGAAATTTGAAGGTTCGGATTTGAAATTCTGA 981
|| ||||||| |||||||| ||||||||| |||
Sbjct 963 GATAAATTTGGAGGTTCGGGTTTGAAATTATGA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5