BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28180.1
Length=1854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473025 jgi|Araly1|473025|fgenesh2_kg.1__2979__AT1G28180.1 1709 0.0
Ahg933960 jgi|Araly1|933960|scaffold_401948.1 159 5e-38
> Ahg473025 jgi|Araly1|473025|fgenesh2_kg.1__2979__AT1G28180.1
Length=1916
Score = 1709 bits (925), Expect = 0.0
Identities = 1083/1159 (93%), Gaps = 12/1159 (1%)
Strand=Plus/Plus
Query 695 CTATACCTTTAGGACTTGAACAGCGTGATGTTATCGGTATTTCAGC-TACGGGTTCCGGC 753
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct 763 CTATACCTTTAGGACTTGAACAGCGTGACGTTATCGGTATTTCA-CAGACGGGTTCTGGC 821
Query 754 AAAACCGCGGCTTTTGTTTTGCCAATGTTGGCTTACATATCTAGGTTGCCACCAATGAGG 813
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 822 AAAACCGCGGCTTTTGTTTTGCCAATGTTGGCTTACATATCTAGATTGCCACCATTGAGG 881
Query 814 GAAGAGAATCAGACAGAAGGTCCTTACGCTCTTGTTATGGTTCCTACACGGGAGCTTGCA 873
||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||
Sbjct 882 GAAGAGAATCAGACAGAAGGTCCTTACGCGCTTGTTATGGCTCCTACAAGAGAGCTTGCA 941
Query 874 CATCAGATAGAAGAAGAGACGGTTAAGTTTTCGCGTTA-CTTGGGGTTCAAGGCGGTTTC 932
||||| || ||||||||||||||||||||| ||||||| ||| ||||| |||||| | ||
Sbjct 942 CATCAAATTGAAGAAGAGACGGTTAAGTTTGCGCGTTATCTT-GGGTTTAAGGCGATCTC 1000
Query 933 TATCACTGGTTGGGAGTCAATAGAGAAACAAGCCTTGAAATTATCACAAGGATGTGAGAT 992
|||||||||| ||||||| || ||||||||||| |||||| |||||||||||||||||||
Sbjct 1001 TATCACTGGTGGGGAGTCTATTGAGAAACAAGCTTTGAAACTATCACAAGGATGTGAGAT 1060
Query 993 TGTGATTGCTACCCCTGGTCGATTGCTAGATTGCCTTGAGAGAAGGTACGTGGTGTTGAA 1052
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1061 TGTGATTGCTACACCTGGTCGATTGATAGATTGCCTTGAGAGAAGGTACGTGGTGTTGAA 1120
Query 1053 CCAATGTAACTATTTAGTTCTTGATGAAGCTGACCGGATGATTGACATGGATTTTGAGCC 1112
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1121 CCAATGTAACTATTTAGTTCTTGATGAAGCTGACCGGATGATCGACATGGGTTTTGAGCC 1180
Query 1113 ACAGGTCTCAGAAGTGTTAGATGTAATGCCTT-GTAGTAATTTGAAACCCGAGAAGGAAG 1171
|||||| | ||||||||||||| |||||||| | ||||||||||||||| |||||||||
Sbjct 1181 GCAGGTCGCGGAAGTGTTAGATGCAATGCCTTCG-AGTAATTTGAAACCCAAGAAGGAAG 1239
Query 1172 ATGAAGAACTCGAAGaaaaaaaGATTTACAGAACTACGTATATGTTCAGTGCCACTATGC 1231
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 ATGAAGAGCTCGAAGAAAAGAAGATTTACAGAACTACGTATATGTTCAGTGCCACTATGC 1299
Query 1232 TTCTTAGTGTAGAGCGTCTCGCTAGAAAATTCTTGAGGAATCCTGTTGTGGTCACCATTG 1291
||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1300 TTCATAGTGTAGAGCGTCTCGCTAGAAAGTACTTGAGGAATCCAGTTGTGGTCACCATTG 1359
Query 1292 GAGAAACCACAAAGTTTATCACTCAACAAGT-GATTATGACCAAAGAATCAGATAAGTTC 1350
|||||||||||||||||||||||||| |||| | | ||||||||||||||| | || |||
Sbjct 1360 GAGAAACCACAAAGTTTATCACTCAAAAAGTTG-TCATGACCAAAGAATCAAACAAATTC 1418
Query 1351 TCTAGGTTAAAGAAACTGATTGACGATCT-AGGTGATGATAAGACAGCGATAGTGTTTGT 1409
|| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 1419 TCAAGGTTAAAGAAACTGATTGACGATCTCAG-TGATGATAAGACAGCGATTGTGTTTGT 1477
Query 1410 GAATACCAGGAACAAGGTTGATTACATTGTTAAGAATCTTGAAAAGGTAGGAAGGTGTCG 1469
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||
Sbjct 1478 GAATACCAGGAACAAGGTTGATTACATTGTTAAGAATCTAGAAAAGTTAGCAAGGTGTCG 1537
Query 1470 TGTGACTACATTGCACGCAGGAAAGTCGCAAGAACAGAGAGATTATAGCTTAGAAGAATT 1529
|||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1538 TGTGACGACATTACACGCTGGGAAGTCACAAGAACAGAGAGATTATAGCTTAGAAGAATT 1597
Query 1530 CAAGAAAAAGAGATTTAACGTTCTTGTTACAACAGATGTTTTAGGCCGTGGG-TTAGATA 1588
||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1598 CAAGAAAAAGAGATTCAACGTTCTTGTTACAACAGATGTTTTAGGCCGAGGGCTT-GATA 1656
Query 1589 TTCTTGACTTGGCACAAGTCATCAACTACGATATGCCTAACACAATGGATCTTTATACGC 1648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 TTCTTGACTTGGCACAAGTCATCAACTACGATATGCCTAACACAATGGATCTTTATACGC 1716
Query 1649 ATAGGATTGGACGAACAGGGCGAGCAGGGAAGACAGGTGTTGCGACAACGTTCTTGACTC 1708
|| |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1717 ATCGGATTGGACGAACAGGACGAGCAGGGAAGACATGTGTTGCGATAACGTTCTTGACTC 1776
Query 1709 TTGAGGATAAAGATGTGTTTTATGGTTTGAAGCAGAAGCTTAATGAGTGTAATAGTTTGG 1768
|||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||| |
Sbjct 1777 TTGAGGATAAAGATGTGTTTTACGGTCTGAAGCAGAAGCTTATTGAGTGTAACAGTTTTG 1836
Query 1769 TGCCACCTGAACTTGCGAGACATGAAGCCTCTAAGTTTAAACCAGGAACCTTTCCTGATA 1828
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1837 TGCCACCTGAACTTGCCAGACATGAAGCCTCTAAGTTTAAACCAGGAACCGTTCCCGATA 1896
Query 1829 GATTCTCCCATTTTTAGGG 1847
|||||||||||||||||||
Sbjct 1897 GATTCTCCCATTTTTAGGG 1915
Score = 848 bits (459), Expect = 0.0
Identities = 619/695 (89%), Gaps = 16/695 (2%)
Strand=Plus/Plus
Query 8 CTGCGATGGAGAAGAAGACGCTCGATTTCGACAATCTTACGAAGCCCGTATTCCTCACCA 67
||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1 CTGCGATGGAGAAGAAGACACTCGATTCCGACAATCTTATGAAGCCCGTATTCCTCACCA 60
Query 68 AAGCTCACAGAAAAGAATTAGCCCTAAAACGCTGTCAGGATGAAATCGCCGATCGTGATC 127
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 61 AAGCTCACAGAGAAGAATTAGCCCTAAAACGCCGTCAGGATGAAATCGCCGATTGTGATC 120
Query 128 GCCGCAGCATCGTTCAGATCTCTCGCTCCAACTCCGATAATGACGATGGAAACCGTCCCC 187
||||| | |||||||||||||| |||||||| || |||||| ||||||||||||| |
Sbjct 121 GCCGC--C-TCGTTCAGATCTCTTGCTCCAACCCCAATAATGGCGATGGAAACCGTTACA 177
Query 188 GAGAT-GTGAAACGAGAACGACA-TCGAAGCCA-CGACCATGACCGAAACAGAGAGAGCG 244
| ||| | ||||||||| || || || || || |||| | | ||| ||||||||||||
Sbjct 178 GGGATCG-GAAACGAGAGCGTCATTC--AGGCAGTGACCGTAAACGAGACAGAGAGAGCG 234
Query 245 ATCGAGAGTTTCGTGAACGTGAAGTTAAAGCTAGGGTTGAGAAATTAGAGATGGTAAAGC 304
|||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||
Sbjct 235 ATCGAGAGTTTCGTGAACGTGACGTCAAAGCTAGGGTTGAGAAATTAGAGAAGCTAAAGC 294
Query 305 GTGAGAAAGAGATTAACGCAATGAAAGAGCAATACTTAGGAACAAC-AAAGCCTAAGAAG 363
||||||||||||||||| ||||||||||||||||||||| | || ||| ||||| |||
Sbjct 295 ACGAGAAAGAGATTAACGCCATGAAAGAGCAATACTTAGGATCTACGAAA-CCTAATAAG 353
Query 364 AGAGTCATCATGAAGCCGAGCAAGAATTTCCGTTTCGATTGGGAGAACACTGAAGATACT 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AGAGTCATCATCAAGCCGAGCAAGAATTTCCGTTTCGATTGGGAGAACACTGAAGATACT 413
Query 424 TTGAGTGGAGAGATGAATGTTCTTTACCAAAACCCTCATGAAGCTCAGCCTCTGTTTGGG 483
| ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 414 TCGAGTGGAGATATGAATGTTCTCTACCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGG 473
Query 484 AGAGGGTGTCGCGCGGGAATAGATCGCCGTGAGCaaaaaaaaCTTA-TGACGGGTAAGCA 542
||||||| ||||||||||||||| ||||||||||| |||||||| | || | |||| |
Sbjct 474 AGAGGGTTTCGCGCGGGAATAGACCGCCGTGAGCAGAAAAAACT-AGTGGCCACTAAGAA 532
Query 543 CgagagagagaagcgtgaggaagaagataagcactggagcgagaagaagttagaggagaT 602
| |||||||| ||||||||| |||||||| | ||||| ||||||||||||||||||||
Sbjct 533 CTCTAGAGAGAAACGTGAGGAACAAGATAAGAATTGGAGTGAGAAGAAGTTAGAGGAGAT 592
Query 603 GAATGAAAGAGATTGGCGTATTTTCAAGGAAGATTTTAATATTTCTTACAGAGGATCAAA 662
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 593 GAGTGAAAGAGATTGGCGTATTTTCAAGGAAGATTTCGATATTTCTTACAAAGGATCCAA 652
Query 663 GATT-C-C-TCATCCGATGAGGAATTGGGAAGAGA 694
|||| | | |||||||||||||| |||| ||||||
Sbjct 653 GATTACTCCTCATCCGATGAGGAGTTGGAAAGAGA 687
> Ahg933960 jgi|Araly1|933960|scaffold_401948.1
Length=2236
Score = 159 bits (86), Expect = 5e-38
Identities = 228/292 (78%), Gaps = 27/292 (9%)
Strand=Plus/Plus
Query 278 GGGTTGAGAAATTAG-AGATG-GTAAAGCGTGAGAAAGAGA-TTAACGCAATGAAAGAGC 334
||||||||||||||| || | | | || | ||||| || | || |||| || |||||||
Sbjct 454 GGGTTGAGAAATTAGTTGA-GAG-AGAGAGGGAGAAGGA-ACTTGACGCCATTAAAGAGC 510
Query 335 AATA-CTTAGGA-ACAACAAAGCCTAAGAAGAGAGTCATCATGAAGCCGAGCAAGAA-TT 391
| || ||| ||| || ||||| |||||||||||||| | | ||| ||| |||| ||
Sbjct 511 AGTATCTT-GGAGGTAA-GAAGCCGAAGAAGAGAGTCAT--T-AGGCCCAGCGAGAAGTT 565
Query 392 TC----C-GTTTCGATTGGGAGAACACTGAAGATACTT-TGAGTGGAGAGATGAATGTTC 445
|| | |||||||||||| |||||||| ||||||| | | || || ||||| ||||
Sbjct 566 TCGTTTCTCTTTCGATTGGGAAAACACTGAGGATACTTCT-A--GG-GATATGAACGTTC 621
Query 446 TTTACCAAAACCCTCATGAAGCTCAGCCTCTGTTTGGGAGAGGGTGTCGCGCGGGAATAG 505
||||||||||||||||||||||||||| ||||||||||||||||| ||| || || || |
Sbjct 622 TTTACCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGGAGAGGGTTTCGTGCTGGTATGG 681
Query 506 ATCGCCGTGAGCaaaaaaaaCTTATGACGGGTAAGCACgagagagagaagcg 557
| || |||||||| || |||| | | ||| ||||| |||| ||||| |||
Sbjct 682 ACCGTCGTGAGCAGAAGAAACA-A-G-CGGCCAAGCATGAGAAAGAGATGCG 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628967860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5