BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28190.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921868 jgi|Araly1|921868|scaffold_103149.1 1179 0.0
> Ahg921868 jgi|Araly1|921868|scaffold_103149.1
Length=832
Score = 1179 bits (638), Expect = 0.0
Identities = 770/832 (93%), Gaps = 16/832 (2%)
Strand=Plus/Plus
Query 92 AATCCAGCTTATACT-AAATGGGTCATGATAACATCACAAAGCTCGGGAGTCTACTCGTA 150
||||||| ||||| | |||||||||| ||||||||||||||| | | |||||||||||||
Sbjct 5 AATCCAG-TTATA-TCAAATGGGTCACGATAACATCACAAAGTTTGCGAGTCTACTCGTA 62
Query 151 AAGCTACACAAAGGTCCTTCAAGTTGGCTTTGTCTTCATCCTCGACCAGACCGAACCAGC 210
|||||||||| || ||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 63 AAGCTACACAGAGCTCCTTCAAGTTGGCTCTGTCTCCATCCCCGACCAGACCGAACCAGC 122
Query 211 AACGGCGGACGAATCAAGCTCGTCAGATCCGACGGTTCTTTACAAGTCTACGATCGTCCC 270
||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 123 AACGGCGGAAGAATCAAGCTCGTCAGATCCGACGGTTCTTTAGAAGTCTATGATCGCCCC 182
Query 271 GTAGTAGTCTCAGAGCTAACAAAAGACTTCCCAAAACACAAAATCTGTAGATCAGACTTA 330
||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 183 GTAGTAGTCTCAGAGCTCACAAGAGACTTCCCAAAACACAAAATCTGTAGATCGGACTTA 242
Query 331 CTCTACATCGGACAGAAAACCCCTGTTCTGTCTGAAACCGAAACACTTAAGCTAGGTCTC 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTCTACATCGGACAGAAAACCCCTGTTCTGTCTGAAACCGAAACACTTAAGCTAGGTCTC 302
Query 391 AACTACTTCCTCCTCCCATCAGATTTCTTCAAGAACGATCTCTCTTTCCTCACCATCGCC 450
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 AACTACTTCCTCCTTCCATCAGATTTCTTCAAGAACGATCTCTCTTTCCTCACCATCGCC 362
Query 451 ACCCTTAAAACCCCACAAAACGGTGGCGTTTTGGTGAAGAAGACTCAACAGCAACCTCAG 510
||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 363 ACCCTAAAAACCCCTCAAAACGGCAGCGTTCTGGTGAAGAAGACTCAACAGCAGCCTCAA 422
Query 511 CCGTTTCTTATACAAAAGGGAGAGAAAGGAGAGCGTTTAAGGATCCGTGTGTCTGAAGAG 570
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 CCATTTCTTATACAAAAGGGAGAAAAAGGAGAGCGTTTAAGGATCCGTGTGTCTGAAGAT 482
Query 571 TTCGTGTCGGAACTGATGATggaagggaagaaaaacagagtaaacgaagaggaagaggaa 630
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 483 TTCGTGTCGGAACTGATGATGGAAGGAAAGAAAAACAGAGCAAACGAAGAGGAAGA--A- 539
Query 631 gaagaaggaggaggagaaggagaaggTAGGGTTTGTACTACGGTGAAGTTGAAGAAAGAC 690
|||| | ||||| | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GAAG--G-AGGAG-A-A-GGAGAAGGTAGAGTTTGTACTACGGTGAAGTTGAAGAAAGAT 593
Query 691 TATGTTCAATTGGTTGGTTTACGTAGATGGAAGCCAAAGCTTGAGACGATAACAGAGACT 750
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 594 TATGTTCAACTGGTTGGTTTACGTAAATGGAAGCCAAAGCTTGAGACCATAACAGAGACT 653
Query 751 AAGGCAATGAAAGCAGCAACGATGGAGAAGACGAAGAAGAAGAGGAAA-AGGTTTACTGT 809
||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 654 AAGGCGATGAAAGCAGCAACGGTGGAGAAGACGAAGAAGAAGAG-AAAGAGGTTTACTGT 712
Query 810 GATGAAGAAGAAGTCTCAGAGTGATTCAAGTTCGAAGCGTAAACTTCAATCCAAATCCAA 869
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 713 GATGAAGAAGAAGTCTCAGACTGATTCAAGTTCGAAGCGTAAGCTTCAATCCAAATTCAA 772
Query 870 GTCCAAAACTAAGAAAAGTATTATGAGGAAA-ATAGATTAGTTTTTGTTTTT 920
||||||||||||||||| | | | | ||| |||||||| |||||||||||
Sbjct 773 GTCCAAAACTAAGAAAACTGCTCTTCG-AAAGATAGATTAATTTTTGTTTTT 823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5