BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28200.1
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921869 jgi|Araly1|921869|scaffold_103150.1 1218 0.0
> Ahg921869 jgi|Araly1|921869|scaffold_103150.1
Length=824
Score = 1218 bits (659), Expect = 0.0
Identities = 759/807 (94%), Gaps = 7/807 (1%)
Strand=Plus/Plus
Query 62 AAATCATGAGTGGGCAAGAGAATCATGATC-ATGGCCGGA--TC-TCTTCTACGCCCGCC 117
|||||||||||||||||||||||||||| | |||| |||| || |||||||| ||||||
Sbjct 17 AAATCATGAGTGGGCAAGAGAATCATGA-CGATGGTCGGATCTCTTCTTCTACTCCCGCC 75
Query 118 GCCGCGTCGGAGCCTTCCAAGGCTGCTGCTCACTCCTCTGACTACGCTCCTTACCCTAAG 177
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 76 GCCGCGTCGGAGCCTTCAAAGGCACCTTCTCACTCCTCTGACTACGCTCCTTACCCTAAG 135
Query 178 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 195
Query 238 ACCACCATGCCAG-CGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 296
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 ACCACCATGCC-GTCGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 254
Query 297 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCTGCCGACGCCACCAA 356
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 255 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCAGCCGATGCCACCAA 314
Query 357 GAAGGCGGAGGATCTCGCCGGAAATTTTTGGCAGCACTTGAAAACAGGCCCAAGTGTAGC 416
|||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 315 GAAGGCAGAGGATCTCGCCGGAAACGTTTGGCAACACTTGAAAACAGGCCCTAGTGTAGC 374
Query 417 AGATGCTGCTGTTTCACGAATTGCTCAGGGGACAAAAATACTTGCAGAGGGTGGATACGA 476
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 375 CGATGCTGCTGTCTCACGAATTGCTCAGGGGACAAAAATACTTGCGGAAGGTGGATATGA 434
Query 477 GAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAAAAACTTCTCAAGACCTATGC 536
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 AAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAGAAACTTCTCAAGACCTATGC 494
Query 537 TTGCTACTTGTCTACATCTGCTGGTCCTGTCCTGGGAGTTATGTATCTTTCGACTCACAA 596
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 495 TTGCTACTTGTCTACATCTGCTGGTCCTGTGATGGGAGTTATGTATCTTTCGACTCACAA 554
Query 597 GCTTGCGTTCTCTAGTGACAATCCTCTCTCTTACAAAGAGGGTGAGCAGACCCTGTGGAG 656
|||||| |||| |||||| | |||||||||||||||||||||||||||||| | ||||||
Sbjct 555 GCTTGCCTTCTGTAGTGATACTCCTCTCTCTTACAAAGAGGGTGAGCAGACTCAGTGGAG 614
Query 657 CTATTACAAGGTGGTACTTCCGGCGAATCAGCTGAAGGCAGTGAACCCATCAACAAGTAG 716
||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| ||
Sbjct 615 CTATTACAAGGTGGTACTTCCAGTGAACCAGCTGAAGGCAGTGAATCCATCAACAAGCAG 674
Query 717 AGTGAACACATCTGATAAATACATACAAGTGATTTCCATCGACAACCACGAGTTCTGGTT 776
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 675 AGTGAACACATCAGAGAAATACATACAAGTGATTTCCATTGACAACCACGAGTTCTGGTT 734
Query 777 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCGGTGCAGTCACA 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 735 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCTGTGCAGTCACA 794
Query 837 TGGTCCGTGAAGGTCCACTGGTATAAA 863
|||||| ||| ||| |||| |||||||
Sbjct 795 TGGTCCATGAGGGTTCACTAGTATAAA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40753398273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5