BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28210.2
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473029 jgi|Araly1|473029|fgenesh2_kg.1__2983__AT1G28210.2 2346 0.0
> Ahg473029 jgi|Araly1|473029|fgenesh2_kg.1__2983__AT1G28210.2
Length=1510
Score = 2346 bits (1270), Expect = 0.0
Identities = 1439/1520 (95%), Gaps = 13/1520 (1%)
Strand=Plus/Plus
Query 1 CAAAAACCTCTCCGTTTTTTCCTCTCTGTTTAGCTTTGAATTCACAAGAGTCATGCGAAG 60
|||||||||||||| |||| || | | | | ||||||||| ||||||||||||||||||
Sbjct 1 CAAAAACCTCTCCG--TTTT-CTGT-T-TCT-GCTTTGAATCCACAAGAGTCATGCGAAG 54
Query 61 ATTCAACTGGGTTCTGCGGCATGTACAAGCTCGAAGAACTTTTGATTCCGCGATCGGATT 120
||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||| ||
Sbjct 55 ATTCAACTGGGTTTTGCGGCATGTACAAGCACGAAGAACATTTGATTCCGAGATCGGTTT 114
Query 121 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGATACATTCACGCTACAGGTATAAACAA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 115 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGTTACATTCACGCTACAGGAATATACAG 174
Query 181 CTCCAGTGCTCGTAATTACTATGATGTTCTCGGTGTTTCTCCTAAAGCTACACGGGAGGA 240
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 175 CTCCAGTGCTCGTAATTACTATGATGTTCTTGGTGTTTCTCCAAAAGCTACACGGGAGGA 234
Query 241 GATTAAAAAATCATTTCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 300
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GATTAAAAAGTCATTCCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 294
Query 301 TCCGTCAGCAAAAAGGAAGTTCCAGGAAATAAGAGAGGCATATGAGACCCTGGGAAATTC 360
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 TCCGTCAGCAAAAAGGAAATTCCAGGAAATAAGAGAGGCTTATGAGACCCTGGGAAATTC 354
Query 361 GGAAAGAAGAGAAGAATATGATAAGCTGCAG-TATCGGAATTCGGATTATGTAAATAATG 419
||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||
Sbjct 355 GGAAAGAAGAGAAGAATATGATAAGCTAC-GCTATCAGAATTCGGATTATGTAAATAATG 413
Query 420 ACGGTGGTGATTCAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATACTTTCC 479
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 ACGGTGGTGATGGAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATTCTTTCC 473
Query 480 ACAAGATTTTTTCTGAGATATTTGAGAACAATCAGATAAAACCTGATATTCGGGTGGAAC 539
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 474 ACAAGATTTTTTCTGAGATATTCGAGAACAATCAGATAAAATCTGATATTCGGGTGGAAC 533
Query 540 TGTCGCTTTCTCTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGTCGCTTTCTTTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 593
Query 600 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTAGCGATGCTGCCATGAGCATTT 659
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 594 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTCGTGATGCTGCCATGAGCGTTT 653
Query 660 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 713
Query 720 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCATGTCTTGTAGAGGATCAGGTA 779
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 714 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCGTGTCTTGTAGAGGATCCGGTA 773
Query 780 TTGTGGAAGGCACAAAGACAGCTGAACTTGTGATCCCTGGAGGGGTGGAGTCTGAAGCTA 839
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 774 TTGTGGAAGCCACAAAGACAGTTGAACTTGTGATCCCTAGAGGGGTGGAGTCTGAAGCTA 833
Query 840 CAATCACAATCGTAGGTGCTGGTAATGTAAGTTCAAGAACAAGTCAACCTGGGAACTTGT 899
| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 834 CGATCACAATCGGAGGTGCTGGTAATGTAAGATCAAGAACAAGTCAACCTGGGAACTTGT 893
Query 900 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 953
Query 960 TGGATGCTAATATTAGCTTTACACAAGCTATTTTGGGGGGCAAAGTTGTGGTGCCAACAC 1019
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 954 TGGATGCTAATATTAGCTTTACACAAGCCATTTTGGGAGGCAAAGTTGTGGTGCCAACAC 1013
Query 1020 TTTCAGGCAAGATACAGCTAGATATACCAAAGGGGACTCAGCCTGATCAACTTCTTGTTT 1079
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1014 TTTCAGGCAAGATACAGCTAGATATACCAGAGGGGACTCAGCCTGGTCAACTTCTTGTTT 1073
Query 1080 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTTC 1139
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1074 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTCC 1133
Query 1140 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATACTGGAAGAGT 1199
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1134 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATATTGGAAGAGT 1193
Query 1200 TTGCAAAGGAAGAAATCAACAATGAGTTGAGCGACTCTGCTGAAGGAAGTTGGTGGAATC 1259
||||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 1194 TTGCAAAAGAAGAAATCAACAATGAATTGAGTGGCTCTGCTGAAGGAAGTTGGTGGAATA 1253
Query 1260 TAACGGGTCCTCAGATCATCCGCGACTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1319
||| |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1254 TAAAGGGTCCTCAGATTATACGCGATTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1313
Query 1320 GCAGGTTAATGGGATGAAGCCACCACGAGAGATGAAAGATAAAAGCATTCAACAGAAGAC 1379
|| |||| | ||||||||||||||||| ||||| |||||||||||||||| |||||||
Sbjct 1314 ACAAGTTAGTCGGATGAAGCCACCACGAAAGATGGAAGATAAAAGCATTCAGCAGAAGAT 1373
Query 1380 AA-ATGAAGACTAATTTCATCTATTGCTGGTAGAACAAAAAGCTCACCAGCATAACAGAG 1438
|| | |||||||||||||| |||||||||||||||||| || ||| |||||||| |||
Sbjct 1374 AACAC-AAGACTAATTTCATTTATTGCTGGTAGAACAAACAGTTCAACAGCATAAAAGAA 1432
Query 1439 AGTGTCATTG-TTTGACCTCATAATTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1497
|| ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1433 AGGGTCAT-GATTTGACCTCATA-TTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1490
Query 1498 ACATCAAACAAGTTAAGCTG 1517
||||||||||||||||||||
Sbjct 1491 ACATCAAACAAGTTAAGCTG 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5