BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28210.2 Length=1517 Score E Sequences producing significant alignments: (Bits) Value Ahg473029 jgi|Araly1|473029|fgenesh2_kg.1__2983__AT1G28210.2 2346 0.0 > Ahg473029 jgi|Araly1|473029|fgenesh2_kg.1__2983__AT1G28210.2 Length=1510 Score = 2346 bits (1270), Expect = 0.0 Identities = 1439/1520 (95%), Gaps = 13/1520 (1%) Strand=Plus/Plus Query 1 CAAAAACCTCTCCGTTTTTTCCTCTCTGTTTAGCTTTGAATTCACAAGAGTCATGCGAAG 60 |||||||||||||| |||| || | | | | ||||||||| |||||||||||||||||| Sbjct 1 CAAAAACCTCTCCG--TTTT-CTGT-T-TCT-GCTTTGAATCCACAAGAGTCATGCGAAG 54 Query 61 ATTCAACTGGGTTCTGCGGCATGTACAAGCTCGAAGAACTTTTGATTCCGCGATCGGATT 120 ||||||||||||| |||||||||||||||| |||||||| |||||||||| |||||| || Sbjct 55 ATTCAACTGGGTTTTGCGGCATGTACAAGCACGAAGAACATTTGATTCCGAGATCGGTTT 114 Query 121 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGATACATTCACGCTACAGGTATAAACAA 180 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| Sbjct 115 GCGTCAAGGGTCTCAGAAGCCGTTGTTCGAGCGTTACATTCACGCTACAGGAATATACAG 174 Query 181 CTCCAGTGCTCGTAATTACTATGATGTTCTCGGTGTTTCTCCTAAAGCTACACGGGAGGA 240 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 175 CTCCAGTGCTCGTAATTACTATGATGTTCTTGGTGTTTCTCCAAAAGCTACACGGGAGGA 234 Query 241 GATTAAAAAATCATTTCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 300 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GATTAAAAAGTCATTCCATGAGCTTGCGAAAAAATTCCACCCTGATACAAATAGAAATAA 294 Query 301 TCCGTCAGCAAAAAGGAAGTTCCAGGAAATAAGAGAGGCATATGAGACCCTGGGAAATTC 360 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 295 TCCGTCAGCAAAAAGGAAATTCCAGGAAATAAGAGAGGCTTATGAGACCCTGGGAAATTC 354 Query 361 GGAAAGAAGAGAAGAATATGATAAGCTGCAG-TATCGGAATTCGGATTATGTAAATAATG 419 ||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||| Sbjct 355 GGAAAGAAGAGAAGAATATGATAAGCTAC-GCTATCAGAATTCGGATTATGTAAATAATG 413 Query 420 ACGGTGGTGATTCAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATACTTTCC 479 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 414 ACGGTGGTGATGGAGAGAGGTTCAGACGTGCATACCAGTCCAATTTCTCGGATTCTTTCC 473 Query 480 ACAAGATTTTTTCTGAGATATTTGAGAACAATCAGATAAAACCTGATATTCGGGTGGAAC 539 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 474 ACAAGATTTTTTCTGAGATATTCGAGAACAATCAGATAAAATCTGATATTCGGGTGGAAC 533 Query 540 TGTCGCTTTCTCTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 599 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TGTCGCTTTCTTTTTCCGAAGCTGCAGAAGGGTGCACAAAACGTTTGTCTTTTGATGCAT 593 Query 600 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTAGCGATGCTGCCATGAGCATTT 659 |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| Sbjct 594 ATGTCTTTTGTGATTCCTGTGATGGGCTTGGCCACCCTCGTGATGCTGCCATGAGCGTTT 653 Query 660 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 654 GTCCAACATGCAGGGGGGTTGGACGAGTAACTATTCCTCCTTTTACAGCATCATGCCAGA 713 Query 720 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCATGTCTTGTAGAGGATCAGGTA 779 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 714 CGTGCAAGGGGACGGGACACATTATTAAGGAATACTGCGTGTCTTGTAGAGGATCCGGTA 773 Query 780 TTGTGGAAGGCACAAAGACAGCTGAACTTGTGATCCCTGGAGGGGTGGAGTCTGAAGCTA 839 ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct 774 TTGTGGAAGCCACAAAGACAGTTGAACTTGTGATCCCTAGAGGGGTGGAGTCTGAAGCTA 833 Query 840 CAATCACAATCGTAGGTGCTGGTAATGTAAGTTCAAGAACAAGTCAACCTGGGAACTTGT 899 | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 834 CGATCACAATCGGAGGTGCTGGTAATGTAAGATCAAGAACAAGTCAACCTGGGAACTTGT 893 Query 900 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 ATATCAAACTAAAGGTTGCTAATGATTCAACTTTCACTAGGGATGGCTCAGATATATATG 953 Query 960 TGGATGCTAATATTAGCTTTACACAAGCTATTTTGGGGGGCAAAGTTGTGGTGCCAACAC 1019 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 954 TGGATGCTAATATTAGCTTTACACAAGCCATTTTGGGAGGCAAAGTTGTGGTGCCAACAC 1013 Query 1020 TTTCAGGCAAGATACAGCTAGATATACCAAAGGGGACTCAGCCTGATCAACTTCTTGTTT 1079 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1014 TTTCAGGCAAGATACAGCTAGATATACCAGAGGGGACTCAGCCTGGTCAACTTCTTGTTT 1073 Query 1080 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTTC 1139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1074 TAAGAGGCAAAGGACTACCGAAGCAAGGCTTTTTTGTAGATCATGGAGATCAGTATGTCC 1133 Query 1140 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATACTGGAAGAGT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1134 GCTTCCGCGTTAACTTTCCTACTGAAGTGAATGAACGTCAGCGTGCTATATTGGAAGAGT 1193 Query 1200 TTGCAAAGGAAGAAATCAACAATGAGTTGAGCGACTCTGCTGAAGGAAGTTGGTGGAATC 1259 ||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||| Sbjct 1194 TTGCAAAAGAAGAAATCAACAATGAATTGAGTGGCTCTGCTGAAGGAAGTTGGTGGAATA 1253 Query 1260 TAACGGGTCCTCAGATCATCCGCGACTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1319 ||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||| Sbjct 1254 TAAAGGGTCCTCAGATTATACGCGATTTCTCGTTAATGGTGCTGCTGGCGCTATTGTTGA 1313 Query 1320 GCAGGTTAATGGGATGAAGCCACCACGAGAGATGAAAGATAAAAGCATTCAACAGAAGAC 1379 || |||| | ||||||||||||||||| ||||| |||||||||||||||| ||||||| Sbjct 1314 ACAAGTTAGTCGGATGAAGCCACCACGAAAGATGGAAGATAAAAGCATTCAGCAGAAGAT 1373 Query 1380 AA-ATGAAGACTAATTTCATCTATTGCTGGTAGAACAAAAAGCTCACCAGCATAACAGAG 1438 || | |||||||||||||| |||||||||||||||||| || ||| |||||||| ||| Sbjct 1374 AACAC-AAGACTAATTTCATTTATTGCTGGTAGAACAAACAGTTCAACAGCATAAAAGAA 1432 Query 1439 AGTGTCATTG-TTTGACCTCATAATTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1497 || ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1433 AGGGTCAT-GATTTGACCTCATA-TTCTATTACAAACTCATTTGATGTGAATAATAAGAG 1490 Query 1498 ACATCAAACAAGTTAAGCTG 1517 |||||||||||||||||||| Sbjct 1491 ACATCAAACAAGTTAAGCTG 1510 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56792555295 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5