BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28220.1 Length=1056 Score E Sequences producing significant alignments: (Bits) Value Ahg335959 jgi|Araly1|335959|fgenesh1_pg.C_scaffold_1002524 1633 0.0 > Ahg335959 jgi|Araly1|335959|fgenesh1_pg.C_scaffold_1002524 Length=1047 Score = 1633 bits (884), Expect = 0.0 Identities = 989/1040 (95%), Gaps = 6/1040 (1%) Strand=Plus/Plus Query 1 ATGGTGAAGGCTCTTGTGATCATAAACTGCATAATTCTAGCCATAGGAAACTGTGGAGGT 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGAAGGTTCTTGTGATCATAAACTGCATAATTCTAGCCATAGGAAACTGTGGAGGT 60 Query 61 CCTTTGATTATGCGTCTCTACTTCAACAATGGCGGTAAAAGGATTTGGTTCTCTACGTTT 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 61 CCTTTGATTATGCGTCTCTACTTCAACAATGGTGGTAAAAGGATTTGGTTCTCTACTTTT 120 Query 121 CTTGAAACTGCAGGCTTTCCTGTTATCTTCATTCC-TCTGCTCTTCTCTTACATTACCCG 179 ||||||||||| |||||||| ||||||||||| || | ||||||||||||||||| |||| Sbjct 121 CTTGAAACTGCTGGCTTTCCAGTTATCTTCATCCCAT-TGCTCTTCTCTTACATTGCCCG 179 Query 180 GCGCAGAAGCAACAATGTGGGTGAT-AGTACAAGTTTCTTTCTTATCAAACCGCGTCTTC 238 ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 180 GCGCAGAAGCAACAATGTGGGTGATGA-TACAAGTTTCTTTCTTATCAAACCGCGTCTTC 238 Query 239 TTATCGCCGCTGTTATTG-TAGGCATTCTCTCAGGGTTTGATAACTACTTGTATGCATAT 297 |||||| |||||| || |||||||||| ||||| |||||||||||||||||||||||| Sbjct 239 TTATCGTGGCTGTT-TTCATAGGCATTCTTTCAGGCTTTGATAACTACTTGTATGCATAT 297 Query 298 GGTATAGCTTATCTTCCAGTTTCTACAGCTGCTCTTATCATTGCTTCACAGTTAGCTTTT 357 |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 298 GGTATAGCTTATCTCCCAGTTTCAACAGCTGCTCTCATCATTGCTTCACAGTTAGCTTTC 357 Query 358 ATAGCTATCTTCTCATTCTTCATGGTTAAACATAAGTTCACTCCTTTTACCATCAATGCT 417 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 358 ATAGCTATCTTCTCATTCTTCATGGTTAAACATAAGTTCACTCCTTTTACCATTAATGCT 417 Query 418 GTTGTGTTGTTGACTGTTGGTGCTGCGGTTTTGGGAATGCATACCGAAACTGATAAGCCA 477 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 418 GTTGTGTTGTTGACCGTTGGAGCTGCGGTTTTGGGAATGCATACCGAAACTGATAAGCCG 477 Query 478 GTTCATGAGACTCACAAGCAGTACATAACTGGTTTCTTGATTACTGTAGCAGCAGCTGTT 537 |||||||||||||| ||||||||||| | ||| |||||||| |||||||| ||||||||| Sbjct 478 GTTCATGAGACTCATAAGCAGTACATTATTGGGTTCTTGATGACTGTAGCTGCAGCTGTT 537 Query 538 ATGTATGCTTTCATCTTGCCATTAGTGGAACTTGCTTACCAGAAAGCTAAGCAAACCATG 597 ||||||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||| Sbjct 538 ATGTATGCTTTTATCTTGCCATTAGTGGAACTTGCTTATCAGAAAGCTAGGCAACCCATG 597 Query 598 AGCTATACCCTTGTGCTCGAGTTCCAGTTGATTTTGTGTCTCCTTGCTTCTATTGTCAGC 657 |||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 598 AGCTATACTCTCGTGCTCGAGTTCCAGTTGATTTTGTGTTTCCTTGCTTCTATTGTCAGC 657 Query 658 GTCATCGGTATGTTCATCGCTGGTGATTTCAAGGCCTTACCAAAAGAAGCAAGAGAGTTC 717 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GTCATCGGTATGTTCATAGCTGGTGATTTCAAGGCCTTACCAAAAGAAGCAAGAGAGTTC 717 Query 718 AAGCTTGGAGAGGCATTGTTCTATGTGGTGGCTGTGTTTTCAGCCATCATATGGCAAGGC 777 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 AAGCTTGGAGAGGCACTGTTCTATGTGGTGGCTGTGTTTTCAGCCATCATATGGCAAGGC 777 Query 778 TTCTTCTTGGGAGCCATTGGATTAATCTTCTCCACATCGTCTCTCGTCTCGGGTATTATG 837 ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| Sbjct 778 TTCTTCTTGGGAGCCATTGGATTAATCTTTTGCACATCGTCTCTCGTCTCGGGAATTATG 837 Query 838 ATATCAGTGCTTTTGCCAATTACAGAGGTTTTAGCTGTTATATTCTACCATGAAAAGTTT 897 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 838 ATATCAGTGCTTTTGCCAATCACAGAGGTTTTAGCTGTTATATTCTACCATGAAAAGTTT 897 Query 898 CAAGCTGAGAAGGGACTTTCTCTTGCTCTCTCCCTTTGGGGCTTTGTCTCTTACTTTTAT 957 ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 898 CAAGCAGAGAAGGGACTTTCTCTAGCTCTCTCCCTTTGGGGTTTTGTCTCTTACTTTTAT 957 Query 958 GGTGAGATAAAGTCTGGCGAGGATAAAAGGAGAATTCAGCAGGAGGAGAGTCAGGAGACA 1017 |||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct 958 GGTGAGATAAAGTCTGGCAAGGATAAAAAGAGAATTCAGCAGGAGGAGAGTCCGGAGACA 1017 Query 1018 GAACAATCTTCTTTGTCAAG 1037 |||||||||||||||||||| Sbjct 1018 GAACAATCTTCTTTGTCAAG 1037 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39304727427 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5