BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28230.1
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921873 jgi|Araly1|921873|scaffold_103154.1 1631 0.0
> Ahg921873 jgi|Araly1|921873|scaffold_103154.1
Length=1112
Score = 1631 bits (883), Expect = 0.0
Identities = 1024/1093 (94%), Gaps = 6/1093 (1%)
Strand=Plus/Plus
Query 34 AGCAAGCAGCAAGAAGAAGATGAAGAATGGTTTGATAATCATAAACTGTATTATCCTCAC 93
||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 3 AGCTAGCAATAAGAAGAAGATGAAGAATGGTCTGATAATCATAAACTGTATAATCCTCAG 62
Query 94 TATAGGAACATGTGGAGGTCCTTTGTTAACTCGTCTCTACTTCACCAATGGCGGAAAACG 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TATAGGAACATGTGGAGGTCCTTTGTTAACTCGTCTCTACTTCACCAATGGCGGAAAACG 122
Query 154 AATCTGGTTCATGAGCTTCCTATCAA-CCGCTGGTTTTCCAATCATCCTCATCCCTCTCT 212
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||
Sbjct 123 AATCTGGTTCATGAGCTTCCTA-CAAACCGCTGGTTGTCCAATCATCCTCATCCCTCTCT 181
Query 213 TGGTCTCCTTCCTCAGCCGTCGCCGCAGCAACCGCAACC-CTAACAACGCGGAAAACAAG 271
|||||||||| || || ||||| ||||||||||||||| | |||||||| |||||||||
Sbjct 182 TGGTCTCCTTTCTGAGACGTCGGCGCAGCAACCGCAACAGC-AACAACGCAGAAAACAAG 240
Query 272 -CGGAAAACAAAGCTCTTCCTCATGGAAACTCCTCTGTTTATCGCCTCCATTGTCATAGG 330
|| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 241 GCG-AAAACAAAGCTTTTCCTCATGGAAACTCCTCTGTTCATCGCCTCCATCGTCATCGG 299
Query 331 GTTGCTCACAGGACTTGACAACTACTTATATTCTTACGGATTAGCATATCTGCCAGTTTC 390
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 300 ATTGCTCACAGGACTTGACAACTACTTATACTCTTACGGATTAGCGTATCTGCCAGTTTC 359
Query 391 AACTTCATCGCTCATAATCGGAACTCAACTAGCTTTCAACGCTCTCTTCGCTTTCTTGTT 450
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 360 AACTTCATCTCTCATAATAGGAACTCAACTAGCTTTCAATGCTCTCTTCGCTTTCTTGTT 419
Query 451 AGTCAAGCAAAAGTTCACTCCGTTCTCCATAAACGCCGTCGTTTTGTTGACGGTTGGTAT 510
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 420 GGTCAAGCAAAAGTTCACTCCTTTCTCCATAAACGCCGTCGCTTTGTTGACGGTTGGTAC 479
Query 511 CGGGATCCTTGCGTTACACAGTGATGGAGACAAACCGGCTAAGGAGAGCAAGAAAGAGTA 570
|||||||||||| |||||||| ||||||||||| |||||||| |||||| | ||| ||||
Sbjct 480 CGGGATCCTTGCTTTACACAGCGATGGAGACAAGCCGGCTAACGAGAGCCATAAACAGTA 539
Query 571 TGTGGTTGGGTTCTTGATGACTGTGGTTGCAGCTCTTCTCTATGCTTTTATATTACCGCT 630
| || ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 540 TCTGATTGGGTTCTTGATGACTGTGGTTGCAGCTGTTCTCTATGCTTTTATATTGCCGCT 599
Query 631 CGTTGAGCTAACTTACAAGAAAGCTCGTCAAGAAATCACTTTCCCACTTGTGCTTGAGAT 690
||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 600 CGTTGAGCTCACTTACAAGAAAGCTCGACAAGAAATCACTTTCCCACTTGTGCTCGAGAT 659
Query 691 TCAGATGGTCATGTGCCTTGCTGCTACTTTTTTCTGTGTCATTGGCATGTTCATCGTTGG 750
|||||||||||||||| ||||||||||||| |||||| || |||| ||||||||||||||
Sbjct 660 TCAGATGGTCATGTGCGTTGCTGCTACTTTGTTCTGTCTCGTTGGGATGTTCATCGTTGG 719
Query 751 AGATTTTAAGGTGATAGCAAGAGAAGCAAGAGAGTTCAAGATTGGAGGATCAGTGTTTTA 810
|||||| |||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 720 AGATTTCAAGGTGATAGAAAAAGAAGCAAGAGAGTTCAAGATTGTAGGATCAGTGTTTTA 779
Query 811 CTATGCATTGATAGTGATCACAGGAATAATATGGCAAGGTTTCTTCTTAGGAGCCATAGG 870
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 CTATGCATTGATAGTGATCACAGGAATAGTATGGCAAGGTTTCTTCTTAGGAGCCATAGG 839
Query 871 GATTGTGTTTTGTGCATCATCACTAGCTTCTGGTGTTCTGATAAGTGTTCTGCTTCCGGT 930
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 840 GATTGTGTTTTGTGCATCATCACTAGCTTCTGGTGTTCTCATCAGTGTTCTGCTTCCGGT 899
Query 931 GACTGAAGTTTTCGCCGTCGTTTGTTTCCGGGAGAAGTTTCAGGCAGAGAAAGGTGTCTC 990
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GACTGAAGTTTTGGCCGTCGTTTGTTTCCGGGAGAAGTTTCAGGCAGAGAAAGGTGTCTC 959
Query 991 TCTACTTCTTTCTCTTTGGGGATTTGTCTCTTACTTCTACGGCGAGTTTAAATCCGGCAA 1050
||||||||| ||||| ||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 960 TCTACTTCTATCTCTCTGGGGCTTCGTCTCTTACTTCTACGGCGAGATTAAATCCGGCAA 1019
Query 1051 GAAAGTTGTTGATAAACCTCAACCGCCGGAGACAGAACTGCCTATTCTTCCTGTTAGTGA 1110
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 GAAAGTTCTTGATAAACCTCAGCCGCCGGAGACAGAACTGCCTATTCTTCCAGTTAGTGA 1079
Query 1111 TTATGTTGCTTAA 1123
|| ||||||||||
Sbjct 1080 TTCTGTTGCTTAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5