BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28240.1
Length=2364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473032 jgi|Araly1|473032|fgenesh2_kg.1__2986__AT1G28240.1 3417 0.0
> Ahg473032 jgi|Araly1|473032|fgenesh2_kg.1__2986__AT1G28240.1
Length=2311
Score = 3417 bits (1850), Expect = 0.0
Identities = 2210/2369 (93%), Gaps = 84/2369 (4%)
Strand=Plus/Plus
Query 6 tttttGTTTGTTAGAGAAGGGCGAGAGAGAGTGACtttttttGTTTG-CC--T-TTGTTA 61
|||||||||||||||| | ||| ||||||||||| ||||||| ||| || | ||||||
Sbjct 3 TTTTTGTTTGTTAGAG-A-GGC--GAGAGAGTGAC-TTTTTTG-TTGCCCATTGTTGTTA 56
Query 62 ATGGC--TTGTGTGTGAGATTCATTGAATTTTTTGAAAATTCTGACGAATAAAAACCATA 119
||||| ||||||| ||||||||||| | |||||||||||||||| ||||||||||| ||
Sbjct 57 ATGGCATTTGTGTGAGAGATTCATTG-A-TTTTTGAAAATTCTGAGGAATAAAAACCCTA 114
Query 120 TCTACCAATCACAAACCCTAGATTTTTGTTATCTTCTTCATCCGAAGATTCTCTTTGATC 179
|||||||||||||||||||||| ||||| | ||||||||||| ||| ||||| ||||||
Sbjct 115 TCTACCAATCACAAACCCTAGA-TTTTGAT-TCTTCTTCATCTGAA-TTTCTC-TTGATC 170
Query 180 TGTGTCTCCTTCCTTCTGA-TTCTCCCATTTCATTTCATTGATTC-TTTTGATTCGATTC 237
||||||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 171 TGTGTCTCCTTCCTTGTGATTTCTCCCATTTCA-TTCATTGATTCTTTTTGATTCGATTC 229
Query 238 TATTCGAGCTCAATTTTGTAGATCAGAACCCAGAATCGAATTTGGGATAACTTGAACAAT 297
||||||||||||||| | ||||||| ||||||||||||||| ||| | |||||||||||
Sbjct 230 AATTCGAGCTCAATTTCGCAGATCAGGACCCAGAATCGAATTCGGGGTCACTTGAACAAT 289
Query 298 ATC-CTTGGTAACTTGTTGATCTGAATTTGAGTGAAGAAGACATCGAATTCAAGTTTGGT 356
||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 290 ATCGTTTGGTGACTTGTTGATCTGAATTTGAGTGAAGAAGACATCGAATTCGAGTTT-G- 347
Query 357 GTGGGAGAttttttttAATGGAGTGATGATGATTTAAAGGGGAAGGTAAAGGGAACGATG 416
|| | || | ||| | ||| || | | || | | |||||||||||||
Sbjct 348 GT--GTGA--TGATTT-A--GAG-GA-G--G-----AA---G-A-CAAAAGGGAACGATG 386
Query 417 ACTGGATTGGGTGTTCGATCCAGTAGCTATGGTTCCTTGGAGAAGACGGGACTTAACGGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 ACTGGATTGGGTGTTCGATCCAGTAGCTATGGTTCCTTGGAGAAGACGGGACTTAACGGC 446
Query 477 GTCGTTTTACCTATCCAGATCACTACCACGACGCGTACCAAACCATCTAAGATGCAGAAA 536
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 447 GTCGTTTTGCCTATTCAGATCACCACCACGACGCGTACCAAACCATCTAAGATGCAGAAA 506
Query 537 GATAGAGAAGGTATTGTACATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATG 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 GATAGAGAAGGGATTGTACATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATG 566
Query 597 TTGCTTCTCTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGGT 656
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TGGCTTCTTTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGGT 626
Query 657 GAA--GATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAGTTCAGGCG 714
|| || || | || |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 627 -AATCAAT-GTGAAGATGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCACTTCTGGCG 684
Query 715 TAAATTATTCAAATATGTTACAAACAAATGAAGAGCTAAACATGAATATTGGAAATATAT 774
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 TAAATTATTCAAATATGTTACAAACAAATGAAGAGCAAAACATGAATATTGGAAATATAT 744
Query 775 CGTTCAAGGCAAAAGAAGTTATTGTGTT--C-CCTCCTCCTCCTATACATTTTCTTGGTT 831
|||| ||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
Sbjct 745 CGTTTAAGGCAAAAGAAGTTATTGTGTTCCCTCCTCCTCCTCCTATGCATTTTCTTGGCT 804
Query 832 ATTCGCTTCCTCAAGGTCATCCTTGTAACAGTTTCACTTTACCTCCCCCACCAGCAGACA 891
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 805 ATTCGCTTCCTCAAGGTCATCCTTGTAACAGTTTCACCTTACCTCCCCCACCAGCTGACA 864
Query 892 GGAAAAGAACAGGACCACGCCCATGCCCGGTATGTTACCTTCCAGTAGAAGAAGCAGTTG 951
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 865 GAAAAAGAACAGGACCACGCCCATGCCCCGTATGTTACCTTCCAGTAGAAGAAGCAGTTG 924
Query 952 CCTTGATGCCAAATGCCCCATCATTTTCCCCTGTTCTTAAGAACTTAACGTATATATATG 1011
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 925 CCTTGATGCCAAATGCCCCGTCATTTTCCCCTGTTCTTAAGAACTTAACGTATATATGTG 984
Query 1012 AAGAACCGTTAAACAGAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACTT 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 985 AAGAACCGTTAAACAGAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACAT 1044
Query 1072 TGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGGTTTG 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGGTTTG 1104
Query 1132 TCAAAGGACCTCAACCTGGTCGAAATACAGGATTTGACATTGATGAGGCAGATCTTCTTG 1191
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TCAAAGGACCTCAGCCTGGTCGAAATACAGGATTTGACATTGATGAGGCAGATCTTCTTG 1164
Query 1192 AAATGAAGCAGTGTCGTGGGATAGTTGTTGCTTCAGCAGTATTTGATGCTTTTGATGATG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAATGAAGCAGTGTCGTGGGATAGTTGTTGCTTCAGCAGTATTTGATGCTTTTGATGATG 1224
Query 1252 TAAAAGCCCCACAAAATATCAGTAAATATGCGGAGGAAACAGTTTGCTTCTACATGTTTG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1225 TAAAAGCCCCACAAAATATCAGTAAATATGCGGAGGAAACAGTTTGCTTCTACATTTTTG 1284
Query 1312 TTGATGAAGAGACTGAATCAATTTTGAAGAGAGAACGAGGCCTTGATGGCAATAAGAAAG 1371
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1285 TTGATGAAGAAACTGAATCAATTTTGAAGAGAGAACGAGGCCTTGATGGCAACAAGAAAG 1344
Query 1372 TAGGGATATGGAGAGTTGTTGTTGTTCATAATCTCCCCTATTCAGATGGAAGGCGCAATG 1431
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1345 TAGGGATATGGAGAGTTGTTGTTGTTCATAATCTCCCCTATTCTGATGGAAGGCGCAATG 1404
Query 1432 GAAAGGTGCCCAAGCTTCTTGTCCATAGGATGTTTCCAAATGCTCGCTATTCTTTATGGA 1491
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GAAAGGTTCCCAAGCTTCTTGTCCATAGGATGTTTCCAAATGCTCGCTATTCTTTATGGA 1464
Query 1492 TTGACGGAAAACTAGAACTTGTCGTCGATCCATATCAAATTCTTGAAAGATTCTTGTGGA 1551
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1465 TTGACGGAAAACTTGAGCTTGTCGTCGATCCATATCAAATTCTTGAAAGGTTCTTGTGGA 1524
Query 1552 GGAAAAATGCTACTTTTGCTATTTCTAGACATTACAAACGATTTGATGTCTTAGTGGAAG 1611
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1525 GGAAAAATGCTACTTTTGCAATTTCTAGACATTACAAACGATTTGATGTCTTAGTAGAAG 1584
Query 1612 CCGAAGCAAATAAAGCTGCTGGTAAATATGATAATGCTTCTATCGACTTTCAAGTGGATT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1585 CCGAAGCAAATAAAGCTGCTGGTAAATATGATAATGCTTCTATCGACTTTCAAGTGGATT 1644
Query 1672 TTTACAAGAACGAAGGGTTAACCCCTTATTCTGTCGCAAAGCTCCCAATCACAAGCGACG 1731
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 TTTACAAGAATGAAGGGTTAACCCCTTATTCTGTCGCAAAGCTCCCAATCACAAGCGACG 1704
Query 1732 TACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTC 1791
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1705 TACCCGAGGGCTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTTACTTGTC 1764
Query 1792 TTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGATCAAATCAGTTTCTCAACAGTAA 1851
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1765 TTTGGTTCAACGAAGTTGACCGATTCACTTCAAGAGATCAAATCAGTTTCTCAACTGTAA 1824
Query 1852 GAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGAC 1911
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 GAGATAAAATTGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGAC 1884
Query 1912 GCAATTTTGTAGTTCAGAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGAC 1971
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 GCAATTTTGTAGTTCAGAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGAG 1944
Query 1972 CTCCGGTGCCTAATTTTCCTCCTCCACCACCTTCGCCGCCTCCACCAGTTTTAATCAGCA 2031
||| |||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 1945 CTCTGGTGCCTAATTTTCCTCC---ACC------GCC---TCCACCAGTTTTAATCAGCA 1992
Query 2032 GCGATTTGCCTAGAAAAATGTCAAGTGGAAGAGC----A--AC---GCCGCCTAGAAGAC 2082
||||| |||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct 1993 GCGATCTGCCTAGAAAAATGTCAAGTGGAAGAGCGGTTAGCACAACGCCGCCTAGAAGAC 2052
Query 2083 GAGGAAGAGACAGACGGTCTGGTCAAAGGGGTCACAGGAAAGCTAACTTGCCAGTAAGAT 2142
| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2053 GTGGAAGAGACAGACGGTCTGGTCAAAGGGGTCACAGGAAAGCTAGTTTGCCTGTAAGAT 2112
Query 2143 TACCAGATTCAGCTTAA-GAGTTGGCGTCCGtcttcttcttcttcttcATGGTCACTCTC 2201
||||||||||||||||| ||||||| | |||||| ||||||| | |||||| |||
Sbjct 2113 TACCAGATTCAGCTTAAAGAGTTGG--T---TCTTCTACTTCTTC---AGGGTCACCCTC 2164
Query 2202 ATCACCAACATCACATTCCAATTTTACCACACAGTATGTTTAttttttttGTTTCTCTAT 2261
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2165 ATCACCAACCTCACATTCCAATTTTACCACACAGTATGTTTATTTTTT--GTTTCTCTAT 2222
Query 2262 TTGATTCTAAGGATTCAAAATCAATTTTTTAATGTATATATATACACGAACATTTTGTAC 2321
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2223 TTGATTCTAAGGATTCAAAATCAATTTTTTAATGTATATATACACACGAACATTTTGTAC 2282
Query 2322 TTGGATAATAAATTATAGTTTCGAATTTT 2350
|||||||||||||||||||||||||||||
Sbjct 2283 TTGGATAATAAATTATAGTTTCGAATTTT 2311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89054992810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5