BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28250.1 Length=762 Score E Sequences producing significant alignments: (Bits) Value Ahg921875 jgi|Araly1|921875|scaffold_103156.1 518 3e-146 > Ahg921875 jgi|Araly1|921875|scaffold_103156.1 Length=359 Score = 518 bits (280), Expect = 3e-146 Identities = 322/342 (94%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 30 gaagaagaa-gaaga-aga-aagatggagaagaaATCTCAGATTTCGTCAACGGAAGCTG 86 ||||||||| ||||| || |||| ||||||||||| ||||||||||||||||||||||| Sbjct 8 GAAGAAGAAGGAAGATGGAGAAGAAGGAGAAGAAATGTCAGATTTCGTCAACGGAAGCTG 67 Query 87 TTTTCCTTGGAGCTCTAGCTCCAGGCGTTAATGGTCCAACATGGAACACATTGAGATTCG 146 |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 68 TTTTTCTTGGAGCTCTAGCTCCAGGCGTCAATGGTCCAACATGGAACACACTGAGATTCG 127 Query 147 CGTTTCTGCTACTGGGTCTATGTCTAGCTTTCATGCTCTCTGTAGCTTTCACCAGTGGCC 206 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 128 CGTTTCTACTACTGGGTCTTTGTCTAGCGTTCATGCTCTCTGTAGCTTTCACCAGTGGCC 187 Query 207 AATCAATGTTGCTTGTTCATGTTGGCTTTCTCATTGTTATCGCATCTACTCTCTTTATCC 266 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 188 AATCAATGTTGCTTGTTCATGTTGGCTTTCTCATTGTTATCGCCTCTACTCTCTTTATCC 247 Query 267 TCCTCAATTGGTTTCTTGCTCAGACAGGCTTAGTACAAGTGGAAACACAAATGCAGGAGC 326 ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| Sbjct 248 TCCTCAATTGGTTTCTTGCTCAGACTGGCTTAGTACCAGTGGAGACACAAATGCAGGAGC 307 Query 327 TGAATTTGTTACCGAATGATAAAACCAAATGATCATGGTCAC 368 |||||||| ||||| |||||||||||||||||||||| ||| Sbjct 308 TGAATTTGGCACCGAGTGATAAAACCAAATGATCATGGACAC 349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28096589829 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5