BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G28250.1

Length=762
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921875 jgi|Araly1|921875|scaffold_103156.1                        518    3e-146


> Ahg921875 jgi|Araly1|921875|scaffold_103156.1
Length=359

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 322/342 (94%), Gaps = 3/342 (1%)
 Strand=Plus/Plus

Query  30   gaagaagaa-gaaga-aga-aagatggagaagaaATCTCAGATTTCGTCAACGGAAGCTG  86
            ||||||||| |||||  || |||| ||||||||||| |||||||||||||||||||||||
Sbjct  8    GAAGAAGAAGGAAGATGGAGAAGAAGGAGAAGAAATGTCAGATTTCGTCAACGGAAGCTG  67

Query  87   TTTTCCTTGGAGCTCTAGCTCCAGGCGTTAATGGTCCAACATGGAACACATTGAGATTCG  146
            |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  68   TTTTTCTTGGAGCTCTAGCTCCAGGCGTCAATGGTCCAACATGGAACACACTGAGATTCG  127

Query  147  CGTTTCTGCTACTGGGTCTATGTCTAGCTTTCATGCTCTCTGTAGCTTTCACCAGTGGCC  206
            ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  128  CGTTTCTACTACTGGGTCTTTGTCTAGCGTTCATGCTCTCTGTAGCTTTCACCAGTGGCC  187

Query  207  AATCAATGTTGCTTGTTCATGTTGGCTTTCTCATTGTTATCGCATCTACTCTCTTTATCC  266
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  188  AATCAATGTTGCTTGTTCATGTTGGCTTTCTCATTGTTATCGCCTCTACTCTCTTTATCC  247

Query  267  TCCTCAATTGGTTTCTTGCTCAGACAGGCTTAGTACAAGTGGAAACACAAATGCAGGAGC  326
            ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||
Sbjct  248  TCCTCAATTGGTTTCTTGCTCAGACTGGCTTAGTACCAGTGGAGACACAAATGCAGGAGC  307

Query  327  TGAATTTGTTACCGAATGATAAAACCAAATGATCATGGTCAC  368
            ||||||||  ||||| |||||||||||||||||||||| |||
Sbjct  308  TGAATTTGGCACCGAGTGATAAAACCAAATGATCATGGACAC  349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28096589829


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5