BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28260.1
Length=3211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473035 jgi|Araly1|473035|fgenesh2_kg.1__2989__AT1G28260.2 3976 0.0
Ahg344590 jgi|Araly1|344590|fgenesh1_pg.C_scaffold_4000932 2340 0.0
> Ahg473035 jgi|Araly1|473035|fgenesh2_kg.1__2989__AT1G28260.2
Length=2823
Score = 3976 bits (2153), Expect = 0.0
Identities = 2579/2783 (93%), Gaps = 35/2783 (1%)
Strand=Plus/Plus
Query 315 GTTTC-TCAGGCTGCTTTTGTGCTCTGTCTTCAAATTTCGAACACTTGTCTGAGATATAT 373
||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 35 GTTTCTTCTGGCTGCTTTTGTGCTCTGTCTTCAAATTTCGAACACTTG-C---------- 83
Query 374 TTGTCTGATTCCAAAGATCATGGAAGCTAATTCAGCTGATCAGAAACAAAAACCTAACTT 433
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 ----CTGATTCCAAACATCATGGAAGCTAATTCAGCTGATCAGAAACAAAAACCTAACTT 139
Query 434 TCTTGTTGAGGTTAATAACATTGAGAAACAGCTATGGACATTAATCCATTCAAAGACTAT 493
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 140 TCTTGTTGAGGTTAACAACATTGAGAAACAGCTATGGACATTAATCCATTCAAAGGGTAT 199
Query 494 ATTGCATACCGATGTTTCAGAATTATACGCGAAAGCTGGTTCGACCTACGAGCAAATCTT 553
||||||| |||||||||| ||| |||||| ||||||||||||||| ||||||||||||||
Sbjct 200 ATTGCATCCCGATGTTTCTGAACTATACGTGAAAGCTGGTTCGACATACGAGCAAATCTT 259
Query 554 TAAAAGCAATCTCCAACACGAAGAGCTTCAAGAAGTAGAGTTCTGTCTCTGGAAACTCCA 613
|||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 260 TAAAAGCAATCTTCAACACGAAGAGCTTCAAGAAATAGAGTTCTGCCTCTGGAAACTCCA 319
Query 614 CTATAAACACATCGATGAGTTTCGTAAAGGCCTTAAAACAAATGATCATGCCAAGCATAT 673
|||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 320 CTATAAACACATCGATGAGTTTCGTAAAGGCCTTAAAACAGATGATCCTATCAAGCATAT 379
Query 674 GAAAGCATTCAAGTTGTTTCTGTCAAAAGCAGCTGAGTTTTACCAGAATCTGATTTCCAA 733
||||||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||
Sbjct 380 GAAAGCATTCAAGTTGTTTCTTTCAAAAGCGGCCGAGTTTTACCAGAGTCTGATTTCCAA 439
Query 734 AGTCAGAGGATATTACCACAGACTCTCCGAGGAATCAGGAGAGCAAAAAAGCAGATTCTT 793
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 440 AGTCAGAGGATATTACCACAGACTCTCCGAGGAATCTGGAGAGCAAAAAAGCAGATTCTT 499
Query 794 ATGCCATCGTTTCTACATTTGTCTTGGAGATCTTCAAAGGTATCAAGAACAATATCTGAA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ATGCCATCGTTTCTACATTTGTCTTGGAGATCTTCAAAGGTATCAAGAACAATATCTGAA 559
Query 854 AGCACATGAACATCCTAATTGGTCAACTGCAGCTACTTACTATCTTGAAGCTGCAAAATC 913
| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 560 AACACATGAGCATCCTAATTGGTCAACTGCAGCTACTTACTATCTTGAAGCGGCAAAATC 619
Query 914 TTGGCCTGATAGTGGAAATCCTCATAACCAGCTAGCTGTATTGGCCACATATGTTAGTGA 973
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 620 TTGGCCTGATAGTGGAAATCCTCATAACCAGGTAGCTGTATTGGCGACATATGTTGGTGA 679
Query 974 TGAGTTATTGGCTCTGTATCACTG-CGTAAGAAGCTTAGCTGTGAAAGAGCCTTTTCCTG 1032
|||||| ||||||||||| || || | |||||||||||||||||||||| ||||||||||
Sbjct 680 TGAGTTTTTGGCTCTGTACCATTGTC-TAAGAAGCTTAGCTGTGAAAGAACCTTTTCCTG 738
Query 1033 GTGCTTCGAACAATCTTCTTTTGTTGTTTGAGAAGAACAGGTCATCTCCATTGCAGTCTC 1092
||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| | ||||
Sbjct 739 GTGCTTCGAACAATCTTGTTTTGTTGTTTGAGAAGAACAGGTCTTCTCCTTTGAAATCTC 798
Query 1093 TGTCTACTGATGCAGAGTTTAACTACTTAAACCCATCAGAGAAAAAAGTTTCTGTGAAGG 1152
|||||||||||||| |||||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 799 TGTCTACTGATGCACAGTTTAACTACTTAAACCCATCGGAGAGAAATGTTTCTCTGAAG- 857
Query 1153 AAC-GAGATTTGTCAAAAGCAAAAGGAGAACTAGTTGCCGGAATTGATTTATGGCCCCTG 1211
||| | ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 858 AACCGTGATTTGTCAAAAGCAAAAGGAGAACAAGCTGCCGGAATTGATTTATGGCCCCTG 917
Query 1212 GTTGTTCGAACAACTAGCTTCTTTTTCCTTAAATCCAGTTTTGATGAGTTTGGTCGGGCA 1271
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 918 GTTGTTCGAACAACTAGCTTCTTTTTCCTTAAATCCAGTTTTGATGAGCTTGGTTGTGCA 977
Query 1272 TTTGCATCAACTATAAGAGAACTGGATGCAGCGTTTGCAGCAGATGATAGAAATCTAGAA 1331
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 978 TTTGCATCAACTATAAGAGAACTGGATGCAGCATTTGCAGCAGATGATAGAAATCTAGAA 1037
Query 1332 GCCATGTTGGAGTCTTATCAATTTATGGACACGGCGAGAAAGGGACCTTATAAAATCCTC 1391
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1038 GCCATGTTGGAGTCTTATCAATTTATGGACACAGCGAGAAAGGGACCGTATAAAATTCTC 1097
Query 1392 CAAATTGTTGCGGTTTTTATCTACATCTTCCACAATTTAGCAGAGGCTAATGGATCCGAC 1451
||| ||||||||||||| |||| |||||||||||||||||| |||| ||||||||| |||
Sbjct 1098 CAACTTGTTGCGGTTTTCATCTTCATCTTCCACAATTTAGCCGAGGTTAATGGATCAGAC 1157
Query 1452 ATCGTGAAAGAGGAAGTTAAGCTAACAAATTTAGCATTAACTATGGTGTTTATCGTCATG 1511
| |||||| |||| ||||||||| ||||||| |||||| ||||||||||| |||||||||
Sbjct 1158 AACGTGAAGGAGGCAGTTAAGCTTACAAATTCAGCATTTACTATGGTGTTCATCGTCATG 1217
Query 1512 GGGCGAGTTGTTGAGAGATGTTTGAAGACAACTCCCTTGGATTCTTGCCCTCTCTTACCT 1571
|||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| |||
Sbjct 1218 GGGCGAGTTGTTGAGAGATGTTTGCAGACGAGTCCCTTGGGTTCTTGCCCTCTCTTGCCT 1277
Query 1572 GCTCTACTTGTATTTCTAGACTACTTACCGTTTCTGCTTGACAAGGTagaagaagaagaa 1631
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1278 GCTCTACTTGTATTTCTAGACTACTTACCGCTTCTGCTTGACAAGGTAGAAGAAGAAGAA 1337
Query 1632 gaagaaTGCAGGTTTGATGAGAAGAGCAAGAGTGCAATATCTTACTTCTTTGGCAAACTC 1691
||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1338 GAA---TGCAGGTTTGATGAGAAGAGCGAGACTGCAATATCTTACTTCTTTTGCAAACTC 1394
Query 1692 GTTGATATCTTGAACCAGTTAAAGGTGAAAGACAAAAACTGCCCTGCTAAAACGTTGTTA 1751
||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||
Sbjct 1395 CTTGATTTCTTGAACCAGTTAAAGGTGAAAGGCAAAAACTGCTCTGCTAAAACGTTGGTA 1454
Query 1752 GCTCTCTGGGAAGATCATGAACTGAAGTCCTTGGCTCCTCTGGCTCCCATACATGCACTT 1811
|| ||||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||
Sbjct 1455 CCTATCTGGGAAGATCATGAACTGAAGTCTTTGGCTCCTCTGGCTTCCATACAAGTACTT 1514
Query 1812 TTGGATTTCTCAAGTAATATGGATCTTAGAGAGAGTTTTGATAGAGGGAAGGAGCTTCGT 1871
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1515 TTGGATTTCTCAAGTCATATGGATCTAAGAGAGAGTTTTGATAGAGGGAAGGAGCTCCGT 1574
Query 1872 CTTCAACGGATTATTAGTTCAGCAATTGATATCACAACTAGGCAGAAGAAGGGTTCTCAA 1931
||||| |||||||||| ||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct 1575 CTTCAGCGGATTATTAATTCCGCAATTGAGATCACAAGTAGGCAGAAGAAGGGTTCTCAA 1634
Query 1932 AAGTGGCTATTCTTTGACAATCAACGGACTCATTTCTACACAACTTCGGGTGAATTGCAA 1991
|||||| ||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1635 AAGTGGGTATTCTTTGACAAGCAACTGACTCATTTCTACACAACTTTGGGTGAATTGCAA 1694
Query 1992 AGCAACGGAGAGCTCTTTCATGGAAATGGAGAGGGTAGAAACAGAAAATGCGTTACTATT 2051
|||| | |||||||||||||||||||||||||||||| | || |||||| |||||| ||
Sbjct 1695 TGCAAAGAAGAGCTCTTTCATGGAAATGGAGAGGGTAGTAGCAAAAAATGTGTTACT-TT 1753
Query 2052 -GGACCAGTTGAAATCATTCCTT-TGGAGAATGAAAGATCTGTTCCTGTAGAAGAGGAAG 2109
|||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 1754 AGGACCAGTTGAAATCATTCCTTGTG-AGAATGAAAGATCTGTGCCTGTAGAAGAGGAAG 1812
Query 2110 AAGTCATTCTTCTCAAGCCGCTCGTAAGGTGTCAATCTGCTCCAATATATTCTTCTGGCA 2169
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1813 AAGTCATTCTTCTCAAGCCGCTCGTAAGGTGTCAATCTGCTCCAATCTATTCTTCTGGCA 1872
Query 2170 TTGCAGCAAAGCCACTTAGCTCTGATTGCACAACTTCAGGAAATCAAACAACTACATCCA 2229
||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1873 TTGCAACAAAGCCACTCAGCTCCGATAGCACAACTTCAGGAAATCAAACAACTACATCCG 1932
Query 2230 ATGACAGCCTAAGACGTACCTTATCACTCATTGGGTCTGAAAGTTTCAGCTTTACGCAAG 2289
|||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1933 ATGAAAGCCTAAGACGTACCTTATCACTCATTGAGTCTGAAAGTTTCAGCTTCACGCAAG 1992
Query 2290 GTCTTAAGGACACGGATCCACAACATTTGCATCTCGAAGAAGGCACTGTCTCAGGAAGAC 2349
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||
Sbjct 1993 GTCTTAAGGACACGGATCCACAACATTTGCATCTAGAAGAGGGCACTGTCTCCCGAAAAC 2052
Query 2350 CTCCATCGCTGAGCGCGTGGGTGGTTGACAAGAACAAAGAGAAAGGACGACTCGGTTTAA 2409
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2053 CTCCATCGCTGAGTGCTTGGGTGGTTGACAAGAACAAAGAGAATGGACGACTCGGTTTAA 2112
Query 2410 GTAAACCAAACGGATTGGGCCCTATTGATGAAACAGGTCCTGTCTCAGCCTTTGATAGTC 2469
||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2113 GTAAACCAAACGGGTTGGGACCTATTGATGAAACAGGTCCTGTCTCATCCTTTGATAGTC 2172
Query 2470 TCTCCATCAATAGCAGCACCGAGCATCCTGCGTCTTCCTATTCGCCTCCTACTCCGTCTG 2529
||||||||| || |||||| ||||||||||||| ||| ||||| ||||| ||||||||||
Sbjct 2173 TCTCCATCAGTAACAGCACTGAGCATCCTGCGTTTTCATATTCACCTCCAACTCCGTCTG 2232
Query 2530 CTCCACTACTGCCTGAAGACGCTTCTTGGTTTCATAATGACGCTAGTACTAACAAAGCAG 2589
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2233 CTCCACTACTGCCTGAAGACGCTTCTTGGTTTCATAATGACGCTAGTACTAACAAAACAG 2292
Query 2590 AGAGCTTCTATGATCAGACACGATATATGGAACTCCCCGGTATCATGAAGCCATACACAA 2649
||||||||||||| || | | || ||||||||||| | ||| ||||||||||||||||||
Sbjct 2293 AGAGCTTCTATGACCACAGAAGAAATATGGAACTCTCTGGTTTCATGAAGCCATACACAA 2352
Query 2650 ACCCACCCTTTGTTGGGATTTCTTCTTCTGAATGGTTACGTCGGTACAGAGAAAGTAGGA 2709
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2353 ACCCACCAGTTGTTGGGATTTCTTCTTCTGAATGGTTACGTCGGTACAGAGAAAGTCGGA 2412
Query 2710 ATCTTGGACCAGCCTATTCCTATCAAGCTCAGGGAACAAACAATTTGAGAAACTTTATGG 2769
||||||||| ||| ||||| |||||||||||||| |||||| ||||||||||||||||||
Sbjct 2413 ATCTTGGACAAGCTTATTCGTATCAAGCTCAGGGGACAAACGATTTGAGAAACTTTATGG 2472
Query 2770 CTCATGGCTCTTCCAAGTTCAGTCTCTT-AGCTAGGTACGGGACACCAAACGATTCTTCT 2828
||||||| ||||||||| ||||||| || |||||||||||||||||||||||| ||||||
Sbjct 2473 CTCATGGGTCTTCCAAGGTCAGTCT-TTCAGCTAGGTACGGGACACCAAACGACTCTTCT 2531
Query 2829 CAAAACTCAACGTT-TCACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAGAGAA 2887
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2532 GAAAACTCAACGTTCT-ACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAGAGAA 2590
Query 2888 GCTCGGCAACGTTCAACAAAGCACAACAAATCCTTATGGCTTCAGTGACGATCCCGGACC 2947
|||| |||| | | ||||| ||||||||||| | |||||||||||||| |||||||||||
Sbjct 2591 GCTCTGCAAAGGTGAACAATGCACAACAAATGCGTATGGCTTCAGTGATGATCCCGGACC 2650
Query 2948 GTTTCTTAGATTTCTGAGAGAAAAAGAGTGGCTGAATGAGAACGGTCAGAGGCTAAGAGG 3007
||||||||||||| ||||||| ||||| |||||||||||||| ||||||||| |||||||
Sbjct 2651 GTTTCTTAGATTTTTGAGAGAGAAAGACTGGCTGAATGAGAATGGTCAGAGGTTAAGAGG 2710
Query 3008 ACCTCCTCCTGCATATATGAACAACTAAAGATGC--GAGTGAGTGAGTTTTCAAGAAACT 3065
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2711 ACCTTCTCCTGCATATATGAACAACTAAAGATGCACGAGTGAGTGAGTTTACAAGAAACT 2770
Query 3066 GTC-CTAAGTTGACAAGTTGTGA 3087
||| | |||||| ||||||||||
Sbjct 2771 GTCTC-AAGTTGGCAAGTTGTGA 2792
> Ahg344590 jgi|Araly1|344590|fgenesh1_pg.C_scaffold_4000932
Length=2454
Score = 2340 bits (1267), Expect = 0.0
Identities = 1586/1738 (91%), Gaps = 29/1738 (2%)
Strand=Plus/Plus
Query 532 GTTCGACCTACGAGCAAATCTTTAAAAGCAATCTCCAACACGAAGAGCTTCAAGAAGTAG 591
||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 32 GTTCGACATATGAGAAAATCTTTAAAAGCAATCTCCAACATGAAGAGCTTCAAGAAGTAG 91
Query 592 AGTTCTGTCTCTGGAAACTCCACTATAAACACATCGATGAGTTTCGTAAAGGCCTTAAAA 651
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 92 AGTTCTGCCTCTGGAAACTCCACTATAAGCACATCGATGAGTTTCGTAAAGGCCTTAAAA 151
Query 652 CAAATGATCATGCCAAGCATATGAAAGCATTCAAGTTGTTTCTGTCAAAAGCAGCTGAGT 711
|| ||||||||| ||| |||||||||||||| |||||||||||||||||||| || ||||
Sbjct 152 CAGATGATCATGTCAACCATATGAAAGCATTTAAGTTGTTTCTGTCAAAAGCCGCCGAGT 211
Query 712 TTTACCAGAATCTGATTTCCAAAGTCAGAGGATATTACCACAGACTCTCCGAGGAATCAG 771
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 212 TTTACCAGAGTCTGATTTCCAAAGTCAGAGGATATTACCGCAGACTCTCCGAGGAATCTG 271
Query 772 GAGAGCAAAAAAGCAGATTCTTATGCCATCGTTTCTACATTTGTCTTGGAGATCTTCAAA 831
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 272 GAGAACAAAAAAGCAGATTCTTATGCCATCGTTTCTATATTTGCCTTGGAGATCTTCAAA 331
Query 832 GGTATCAAGAACAATATCTGAAAGCACATGAACATCCTAATTGGTCAACTGCAGCTACTT 891
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 332 GGTATCAAGAACAATATCTGAAAACACATGAGCATCCTAATTGGTCAACTGCAGCTACTT 391
Query 892 ACTATCTTGAAGCTGCAAAATCTTGGCCTGATAGTGGAAATCCTCATAACCAGCTAGCTG 951
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 392 ACTATCTTGAAGCTGCAAAATCTTGGCCTGATAGTGGAAATCCTCATAATCAGCTAGCTG 451
Query 952 TATTGGCCACATATGTTAGTGATGAGTTATTGGCTCTGTATCACTGCGTAAGAAGCTTAG 1011
||||||| ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 452 TATTGGCGACATATGTTGGTGATGAGTTCTTGGCTCTGTACCACTGTGTAAGAAGCTTAG 511
Query 1012 CTGTGAAAGAGCCTTTTCCTGGTGCTTCGAACAATCTTCTTTTGTTGTTTGAGAAGAACA 1071
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 512 CTGTGAAAGAGCCTTTTCCTGGTGCTTCAAACAATCTACTTTTGTTGTTTGAGAAGAACA 571
Query 1072 GGTCATCTCCATTGCAGTCTCTGTCTACTGATGCAGAGTTTAACTACTTAAACCCATCAG 1131
|||| ||||| ||| | |||||||||||||| ||| ||||||||| || |||||||| |
Sbjct 572 GGTCTTCTCCTTTGAAATCTCTGTCTACTGACGCACAGTTTAACTTCTCAAACCCATTGG 631
Query 1132 AGAAAAAAGTTT-CTGTGAAGGAACGAGATTTGTCA-A-AAGCAAAAGGAGAACTAGTTG 1188
|| | ||| ||| ||||| | || | | ||||| | | || | | | || | |
Sbjct 632 AG-AGAAATTTTACTGTG-A--AA--A-A--TGTCAGAGAGGC--CCGCA-ATTTAATAG 679
Query 1189 CCGGAA-TTGATTTATGGCCCCTGGTTGTTCGAACAACTAGCTTCTTTTTCCTTAAATCC 1247
| ||| |||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 680 -CTGAAGTTGATTTATGGCCCCTGGAAGTGCGGACAACCAGCTTCTTTTTCCTTAAATCC 738
Query 1248 AGTTTTGATGAGTTTGGTCGGGCATTTGCATCAACTATAAGAGAACTGGATGCAGCGTTT 1307
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 739 AGTTTTGATGAGTTTGGTTGTGCATTTGCATCAACTATAAGAGAAGTGGATGCAGCGTTT 798
Query 1308 GCAGCAGATGATAGAAATCTAGAAGCCATGTTGGAGTCTTATCAATTTATGGACACGGCG 1367
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 799 GCAGCAGATGATAGACATCTAGAAGTCATGTTGGAGTCTTATCAATTTATGGACACGTCG 858
Query 1368 AGAAAGGGACCTTATAAAATCCTCCAAATTGTTGCGGTTTTT-ATCTACATCTTCCACAA 1426
||||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||||| ||
Sbjct 859 AGAAAGGGACCTTATAAAATCCTTCAACTTGTTGC-GTTTTTCATCTTCATCTTCCATAA 917
Query 1427 TTTAGCAGAGGCTAATGGATCC-GACATCGTGAAAGAGGAAGTTAAGCTAACAAATTTAG 1485
|||||| |||| ||||||| || |||| ||||||| ||||||||||||||||||||||||
Sbjct 918 TTTAGCCGAGGTTAATGGA-CCAGACAACGTGAAAAAGGAAGTTAAGCTAACAAATTTAG 976
Query 1486 CATTAACTATGGTGTTTATCGTCATGGGGCGAGTTGTTGAGAGATGTTTGAAGACAACTC 1545
|||||||||||||||| || |||||| ||||||||||||||||||||||||||| | ||
Sbjct 977 CATTAACTATGGTGTTCATTATCATGGTGCGAGTTGTTGAGAGATGTTTGAAGACGAGTC 1036
Query 1546 CCTTGGATTCTTGCCCTCTCTTACCTGCTCTACTTGTATTTCTAGACTACTTACCGTTTC 1605
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCTTGGATTCTTGCCCTCTCTTGCCTGCTCTACTTGTATTTCTAGACTACTTACCGTTTC 1096
Query 1606 TGCTTGACAAGGTagaagaagaagaagaagaaTGCAGGTTTGATGAGAAGAGCAAGAGTG 1665
||||||||||||| |||||||| || |||||||||||||||||||| | | ||| ||
Sbjct 1097 TGCTTGACAAGGT---AGAAGAAG-AG--GAATGCAGGTTTGATGAGAAAAACGAGACTG 1150
Query 1666 CAATATCTTACTTCTTTGGCAAACTCGTTGATATCTTGAACCAGTTAAAGGTGAAAGACA 1725
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||
Sbjct 1151 CAATATCTTACTTCTTTGGCAAACTCGTTGATTTCTTGAACCGGATAAAGGTGAAAGGCA 1210
Query 1726 AAAACTGCCCTGCTAAAACGTTGTTAGCTCTCTGGGAAGATCATGAACTGAAGTCCTTGG 1785
|||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1211 AAAACTGCTCTGCTAAAACGTTGGTAGCTCTCTGGGAAGAACATGAACTGAAGTCCTTGG 1270
Query 1786 CTCCTCTGGCTCCCATACATGCACTTTTGGATTTCTCAAGTAATATGGATCTTAGAGAGA 1845
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1271 CTCCTCTGGCCCCCATACATGTACTTTTGGATTTCTCAAGTAATATGGATCTTAGAGAGA 1330
Query 1846 GTTTTGATAGAGGGAAGGAGCTTCGTCTTCAACGGATTATTAGTTCAGCAATTGATATCA 1905
||||||||||||||||||| |||||||||||||||| |||| ||| ||||||| ||||
Sbjct 1331 GTTTTGATAGAGGGAAGGAAATTCGTCTTCAACGGATCATTAATTCCGCAATTGGGATCA 1390
Query 1906 CAACTAGGCAGAAGAAGGGTTCTCAAAAGTGGCTATTCTTTGACAATCAACGGACTCATT 1965
||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1391 CAAGTAGGCCGAAGAAGGGTTCTCAAAAGTGGCTATTCTTTGACAAGCAACGGTCTCATT 1450
Query 1966 TCTACACAACTTCGGGTGAATTGCAAAGCAACGGAGAGCTCTTTCATGGAAATGGAGAGG 2025
|||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||
Sbjct 1451 TCTACACAACTTCGGGTGAATTGCAATGCAAAGAAGAGCTCTTTTATGGAAATGGAGAGG 1510
Query 2026 GTAGAAACAGAAAATGCGTTACTATTGGACCAGTTGAAATCATTCCTT-TGGAGAATGAA 2084
|| | ||||||||||| |||||||| ||||| |||||||||||||||| || ||||||||
Sbjct 1511 GTGGTAACAGAAAATGTGTTACTATAGGACCTGTTGAAATCATTCCTTGTG-AGAATGAA 1569
Query 2085 AGATCTGTTCCTGTAGAAGAGGAAGAAGTCATTCTTCTCAAGCCGCTCGTAAGGTGTCAA 2144
||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1570 GGATCTGTGCCTGTGGAAGAGGAAGAAGTCATTCTTCTCAAGCAGCTCGTAAGGTCTCAA 1629
Query 2145 TCTGCTCCAATATATTCTTCTGGCATTGCAGCAAAGCCACTTAGCTCTGATTGCACAACT 2204
||||||||||| |||||||||||||||||| |||||||||| ||||| ||| ||| ||||
Sbjct 1630 TCTGCTCCAATCTATTCTTCTGGCATTGCAACAAAGCCACTCAGCTCCGATAGCATAACT 1689
Query 2205 TCAGGAAATCAAACAACTACATCCAATGACAGCCTAAGACGTACCTTATCACTCATTG 2262
|||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||
Sbjct 1690 TCAGGAAATCAAACAACTACGTCCGATGAAAGCCTAAGACATACCTTATCACTCATTG 1747
Score = 760 bits (411), Expect = 0.0
Identities = 566/638 (89%), Gaps = 22/638 (3%)
Strand=Plus/Plus
Query 2376 GACAAGAACAAAGAGAAAGGACGACTCGGTTTAAGTAAACCAAACGGATTGGGCCCTATT 2435
|||| |||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 1807 GACACGAACAAAGAGAATGGGCGACTCGGTTTAAGTAAACCAAACGGGTTGGGCCCTATT 1866
Query 2436 GATGAAACAGGTCCTGTCTCAGCCTTTGATAGTCTCTCCATCAATAGCAGCACCGAGCAT 2495
||||||||||||||||| ||| ||||||||||||||||||||| || |||||| |||
Sbjct 1867 GATGAAACAGGTCCTGTATCATCCTTTGATAGTCTCTCCATCAGTAACAGCACTGAG--- 1923
Query 2496 CCTGCGTCTTCCTATTCGCCTCCTACTCCGTCTGCTCCACTACTGCCTGAAGACGCTTCT 2555
| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1924 -C--CGTCTTCATATTCACCTCCAACTCCGTCTGCTCCACTACTGCCTGAAGACGCTTCT 1980
Query 2556 TGGTTTCATAATGACGCTAGTACTAACAAAGCAGAGAGCTTCTATGATCAGACACGATAT 2615
|||||||||||||||||| | | |||||||||||||||||||||||| || | | |||||
Sbjct 1981 TGGTTTCATAATGACGCTGGAAATAACAAAGCAGAGAGCTTCTATGACCACAGAAGATAT 2040
Query 2616 ATGGAACTCCCCGGTATCATGAAGCCATACACAAACCCACCCTTTGTTGGGATTTCTTCT 2675
||||||||| | ||| ||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 2041 ATGGAACTCTCTGGTTTCATGAAGCCATACACAAACCTACCAGTTGTTGAAATTTCTTCT 2100
Query 2676 TCTGAATGGTTACGTCGGTACAGAGAAAGTAGGAATCTTGGACCAGCCTATTCCTATCAA 2735
||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 2101 TCTGAATGGTTACGTCGGTACAGAGAAAGCCGGAATCTTGGACCAGCCTATTCGTATCAA 2160
Query 2736 GCTCAGGGAACAAACAATTTGAGAAACTTTATGGCTCATGGCTCTTCCAAGTTCAGTCTC 2795
|||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2161 GCTCAGGGGACAAACGATTTGAGAAACTTTATGGCTCATGGGTCTTCCAAGGTCAGTCTT 2220
Query 2796 TTAGCTAGGTACGGGACACCAAACGA--------T--TCT-T-CTCAAAACTCAACGTTT 2843
|||||||||||||||||||||||||| | ||| | || ||||||||||||||
Sbjct 2221 TTAGCTAGGTACGGGACACCAAACGAACAACCGATGATCTCTTCTGAAAACTCAACGTTT 2280
Query 2844 CACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAG-AGAAGCTCGGCAACGTTCA 2902
||||||||||||||||||||||||||||||||||||||| | |||||| |||||| | |
Sbjct 2281 TACCCTCAGCTCTACATGGAAGACCATGAATCTAGAGGAGCA-AAGCTCTGCAACGGTGA 2339
Query 2903 ACAAAGCACAACAAATCCTTATGGCTTCAGTGACGATCCCGGACCGTTTCTTAGAT-TTC 2961
|||| ||||||||||| ||| |||||||||||| |||||| ||| |||||||||| ||
Sbjct 2340 ACAATGCACAACAAATGCTTTTGGCTTCAGTGATGATCCCAAACCATTTCTTAGATATT- 2398
Query 2962 TGAGAGAAAAAGAGTGGCTGAATGAGAACGGTCAGAGG 2999
||||||| ||||| |||||||||||||| |||||||||
Sbjct 2399 TGAGAGAGAAAGACTGGCTGAATGAGAATGGTCAGAGG 2436
Score = 69.4 bits (37), Expect = 2e-10
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 2264 GTCTGAAAGTTTCAGCTTTACGCAAGGTCTTAAGGACACG 2303
||||||||||||||||||||||||||||||| ||||||||
Sbjct 1773 GTCTGAAAGTTTCAGCTTTACGCAAGGTCTTGAGGACACG 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121317430325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5