BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28270.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473036 jgi|Araly1|473036|fgenesh2_kg.1__2990__AT1G28270.1 1232 0.0
> Ahg473036 jgi|Araly1|473036|fgenesh2_kg.1__2990__AT1G28270.1
Length=793
Score = 1232 bits (667), Expect = 0.0
Identities = 760/801 (95%), Gaps = 22/801 (3%)
Strand=Plus/Plus
Query 1 CTGCATAATCTCTCACACACTTCTATTTCTCCCTCTCCTTGTCACAAGGAAAGGGCGTAG 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGCATAATCTCTCATACACTTCTATTTCTCCCTCTCCTTGTCACAAGGAAAGGGCGTAG 60
Query 61 AAG-aaccaaaacctaaacaaaagagcaataataactcattaaaaaaccaaaac----ca 115
||| |||||||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 61 AAGAAACCAAAACCTAAACAAAAGAGTAATAATAACTCATTAAAAAAACAAAACAAAACA 120
Query 116 aaaaaaaacaaaaTGGGTGTCAAAATGTTATTAATCTTTGGTCTCTTGATCTTAGCTATG 175
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 121 AAAATAAACAAAATGGGTGTCAAGATGTTACTAATCTTTGGTCTCTTGATCTTAGCCATG 180
Query 176 GTAGCTAAATCCGTCAATGCAACCTACCCTTTAACCAAATCTTGCATCAACGGGCAAGGT 235
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 GTAGCTAAATCCGTCAATGCAACCTACCCATTGACCAAATCTTGCATCAACGGGCAAGGT 240
Query 236 TGCATCGGGGAAGACGATGAGCTCGAATCTCTAATGGATTCAGAGACAAACCGTCGTCAA 295
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGCATCGGGGAAGATGATGAGCTCGAATCTCTAATGGATTCAGAGACAAACCGTCGTCAA 300
Query 296 CTCGCAAGAGGACGTCGTTACATTGGCTACGATGCTCTCAAAAAGAACAATGTGCCTTGC 355
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 CTCGCTAGAGGACGCCGTTACATTGGCTATGATGCTCTCAAAAAGAACAATGTGCCTTGC 360
Query 356 AGTAGACGTGGCCGATCCTACTACGATTGCAAGAAGAGAAGAAGGAATAATCCTTACAGG 415
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 AGTAGACGTGGCCGATCTTACTACGATTGCAAGAAGAGAAGAAGGAATAATCCTTATAGG 420
Query 416 CGTGGATGCAGTGCCATCACGCATTGCTATAGGTACGCTCGCTAAATGATAGAGAGGAAG 475
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 421 CGTGGATGCAGTGCCATCACGCATTGCTATAGGTACGCACGCTAAATGATAGAGAGG-A- 478
Query 476 AGATTTGATTCAACAACGTACGTTCGTATCTTCATTCTTCTTTCTTGATCGTTAATA--T 533
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct 479 AGATTTGATTCAACAACGTACGTTCG-ATCTTCATTCTTCATTCTTGATCGTTAATATTT 537
Query 534 TAATTGCCTCTCCTTACTTCCATCttttttttttttCATTCTTTCTTAACGTATCCTATG 593
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 538 TAATTGCCTCTCCTTACTTCCA-C---CTTTTTTTTCATTCTTTCTTAACGTATCCTATG 593
Query 594 TTATACGTATGATC----TATATATTC---TTTTTTGTTCTTTATATAATCATCATGATG 646
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||
Sbjct 594 TTATACGTATGATCTATATATATATTCTTTTTTTTTGTTCTTTATTTAATCATCATGATG 653
Query 647 CATATAAGCTTTTGATTCATTGGTATATCACTTACTTTTCCTTTGTTGTTGTCCTTTTTT 706
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 654 CATATAAGCTTTTGATTCATTGGTATATCACTT-CTTTTCCTTTGTTGTTGTCCTTTTTT 712
Query 707 ATTTCGTTTCGTTCATATAATTAAGTTCCGTTTTGTCTATTATATACATCATGATGTTTT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 ATTTCGTTTCGTTCATATAATTAAGTTCCGTTTTGTCTATTATATACATCATGATGTTTT 772
Query 767 AGTATTTTACAATTAAGCATT 787
|||||||||||||||||||||
Sbjct 773 AGTATTTTACAATTAAGCATT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5