BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28280.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921879 jgi|Araly1|921879|scaffold_103160.1 1216 0.0
> Ahg921879 jgi|Araly1|921879|scaffold_103160.1
Length=781
Score = 1216 bits (658), Expect = 0.0
Identities = 748/789 (95%), Gaps = 15/789 (2%)
Strand=Plus/Plus
Query 61 tctaaaagctctcttctctTACAATGGAGAATTCACCGAGATACAGAGAAGCGACGAATC 120
||||||||||||| | || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TCTAAAAGCTCTC-T-TC-TACAATGGAGAATTCGCCGAGATACAGAGAAGCGACGAATC 57
Query 121 TGATTCCGTCGCCGAGATGTCACAACAGCAACAACAGTTGCGGTATGAGCAGTAGCAGTG 180
||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 58 TGATTCCATCGCCGAGATGTCACAACA-C--CAACAGTTGCAGTATGAGCAGTAGCAGTG 114
Query 181 AAAGTAACAAACCACCAACAACTCCGACCCGACACGTAACCACAAGATCCGAATCCGGTA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 115 AAAGTAACAAACCACCAACAACTCCGACCCGACACGTAACCACAAGATCCGAATCCGG-A 173
Query 241 A-CCCGTACCCGACAACATTCGTCCAAGCAGATACTTCTTCCTTCAAACAAGTCGTCCAG 299
| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 174 AGCCCGTACCCGACAACATTCGTTCAAGCAGATACTTCATCCTTCAAACAAGTCGTTCAG 233
Query 300 ATGCTAACCGGATCCGCCGAGAGACCCAAACACGGTTCATCTCTCAAACCAAACCCGACC 359
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 234 ATGCTAACCGGATCCTCCGAGAGACCCAAACACGGTTCATCTCTTAAACCAAACCCGACC 293
Query 360 CATCATCAACCCGACCCAAGATCCACTCCTTCTTCTTTCTCAATCCCACCAATCAAAGCC 419
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CATCA--A-CCCGACCCAAGATCCACTCCTTCTTCTTTCTCAATCCCACCAATCAAAGCC 350
Query 420 GTACCTAACAAGAAACAGTCTTCTTCTTCAGC---ATCAGGGTTTCGTCTCTACGAGCGT 476
||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 351 GTACCAAACAAGAAACAGTCTTCTTCTTCTTCCTCATCAGGGTTTCGTCTCTACGAGCGT 410
Query 477 CGTAATTCAATGAAGAATCTCAAAATCAATCCTTTAAACCCGGTTTTTAACCCGGTTAAT 536
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 411 CGTAATTCAATGAAGAATCTCAAAATCAATCCTTTGAACCCGGTTTTTAACCCGGTCAAT 470
Query 537 TCAGCTTTCTCTCCCCGTAAACCGGAGATCCTCTCTCCAAGCATCTTAGATTTCCCATCT 596
||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||
Sbjct 471 TCAGCTTTCTCTCCCCGGAAACCGGAGATCCTCTCTCCGAGCATCCTCGATTTCCCATCT 530
Query 597 CTCGTTCTCAGCCCGGTTACGCCTCTTATACCCGACCCGTTTGATCGATCCGGGTCATCA 656
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 531 CTCGTTCTTAGCCCGGTTACGCCTCTTATACCCGACCCGTTTGATCGATCTGGGTCATCA 590
Query 657 AACCAAAGCCCCAACGAGCTTGCTGCGGAGGAGAAAGCAATGAAAGAGAGAGGCTTTTAT 716
|| | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 591 AATCGAAGCCCCAACGAGCTTGCGGCGGAGGAGAAAGCGATGAAAGAGAGAGGCTTTTAT 650
Query 717 TTGCATCCATCTCCGGCAACAACTCCGATGGATCCAGAGCCTCGACTTCTTCCTCTATTC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 651 TTGCATCCATCTCCGGCAACAACTCCGATGGATCCAGAGCCTCGACTTCTTCCACTATTC 710
Query 777 CCGGTGACTTCTCCTAGAGTCTCAGGTTCTTCATCAGCTTCTACTTCTTGaaaaaaaGAC 836
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 711 CCGGTGACTTCTCCTCGAGTCTCAGGTTCTTCATCAGCTTCTACTTCTTGAAAAAAAC-C 769
Query 837 CTAAttttt 845
|||||||||
Sbjct 770 CTAATTTTT 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5