BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28300.1
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473040 jgi|Araly1|473040|fgenesh2_kg.1__2994__AT1G28300.1 1925 0.0
> Ahg473040 jgi|Araly1|473040|fgenesh2_kg.1__2994__AT1G28300.1
Length=1293
Score = 1925 bits (1042), Expect = 0.0
Identities = 1227/1312 (94%), Gaps = 30/1312 (2%)
Strand=Plus/Plus
Query 13 tctctctctctctctctcCGGGAAAAATGGATAACTTCTTACCCTTTCCCTCTTCTAACG 72
||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct 1 TCTCTCTCTCTCTCTCTCCCTGAAAAATGGATAACTTCTTGCCCTTTTCCTCTTCTAACG 60
Query 73 CAAACTCTGTCCAAGAACTCTCTATGGATCCTAACAACAATCGCTCGCACTTCACAACAG 132
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 61 CAAACTCTGTCCAAGAACTCTCTATGGATCTTAACAACAATCGTTCGCACTTCACAACGG 120
Query 133 TCCCTACTTATGATCATCATCAGGCTCAGCCTCATCACTTCTTGCCTCCGTT-TTCATAC 191
|||||||||||||||| | | |||||||||||||||||| |||| || || |||||||
Sbjct 121 TCCCTACTTATGATCA-C--CTGGCTCAGCCTCATCACTTGATGCCGCC-TTATTCATAC 176
Query 192 CCGGTGGAGCAGATGGCGGCGGTGATGAATCCTCAGCCGGTTTACTTATCGGAGTGTTAT 251
||||||||||||||| ||||||||| |||||| |||||||||||||| |||||| |||||
Sbjct 177 CCGGTGGAGCAGATGACGGCGGTGACGAATCCGCAGCCGGTTTACTTCTCGGAGGGTTAT 236
Query 252 CCTCAGATCCCGGTTACGCAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGT 311
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CCTCAGATCCCGGTTACGAAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGT 296
Query 312 TTGTGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAAC 371
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGAGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAAC 356
Query 372 AGGAAA-AACGCCATGATGAGATCAAGAAACAACTCTAGCCCTAATTCTAGTCCAAGTGA 430
| |||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 A-GAAAGAACGCGATGATCAGATCAAGAAACAACTCTAGCCCTAATTCCAGTCCAAGTGA 415
Query 431 GTTGGTTGATTCAAAGAGACAGCTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTC 490
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 416 GTTGGTTGATTCAAAGAGACAGGTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTC 475
Query 491 CGACAAGAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTG 550
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 CGACAAAAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTG 535
Query 551 TGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTCTACCAAAGAG 610
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 536 TGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTTTACCAAAGAG 595
Query 611 AGATGCAGAAGCAAATCTTCCGAAGCTATCTGATAAAGAAGGAATCGTTGTACAGATGAG 670
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 596 AGATGCAGAAGCAAATCTTCCGAAGTTATCTGATAAAGAAGGAATCGTTCTAGAGATGAG 655
Query 671 AGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAG 715
Query 731 CAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCTGAGATAGG 790
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 716 CAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCAGAGATGGG 775
Query 791 AGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATGAATGGAAA 850
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 776 AGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATTAATGGGAA 835
Query 851 TTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGGAACCACTACGAAGA 910
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 836 TTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGAAACCACTACGAAGA 895
Query 911 GGCAATGCTTGATTACATACCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGG 970
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CACAATGCTTGATTACATATCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGG 955
Query 971 AAATCTAAACGATCACTATCCCATCCCTAACGATCTCATGGACCTCACCACTGACCTTCA 1030
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 956 AAATCTAAATGATCACTATCCCATCCCTAACGATCTCATGGACCTCGCCACTGATCTTCA 1015
Query 1031 GCACCATCAAGCCACGTCCTCATCAATGCCACCTGAGGATCACGCGTACGTGGGTTCATC 1090
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 1016 GTACCATCAAGCCACGTCCTCAG---TGCCACCTGAGGATCACGCGTACATGGGTTCGTC 1072
Query 1091 CGATGATCAGGTGAGCTTTAACGACTTTGAGTGGTGGTGATATGGTGGTGGAAGTTCTCA 1150
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1073 CGATGATCAAGTGAGCTTTAACGACTTTGAGTGGTGGTGATATGGTGG---AAGTTCTCA 1129
Query 1151 AGTTCATA-A-C--CCCCTTTATGAAAATAGACCTTAAGATATACAAAAGAGATTAAAAG 1206
|||||||| | | |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1130 AGTTCATATAGCTACCCCCTTATGAAAATAGACCTTAAGATATACAAGAGAGATTAAAAG 1189
Query 1207 aaaaaaaaGTTAGTATATTTCATCATATCTCTC-AT-TG-AAGATGAGATTTATATCTAT 1263
||||| | | ||||||||||||| |||| | || | || |||||||| ||||||||
Sbjct 1190 AAAAAGA--T-AGTATATTTCATCGTATC-CGAGATATTCAACATGAGATTCATATCTAT 1245
Query 1264 AATTG-TTTA-ATAGTGTTTTTATTACTTTTCTATCAATATATTAAAGTTTT 1313
||||| |||| | ||||||||||||| || |||||| ||||||||||||
Sbjct 1246 AATTGCTTTATAGAGTGTTTTTATTAATT----ATCAATGTATTAAAGTTTT 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49254808764
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5