BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G28300.1 Length=1317 Score E Sequences producing significant alignments: (Bits) Value Ahg473040 jgi|Araly1|473040|fgenesh2_kg.1__2994__AT1G28300.1 1925 0.0 > Ahg473040 jgi|Araly1|473040|fgenesh2_kg.1__2994__AT1G28300.1 Length=1293 Score = 1925 bits (1042), Expect = 0.0 Identities = 1227/1312 (94%), Gaps = 30/1312 (2%) Strand=Plus/Plus Query 13 tctctctctctctctctcCGGGAAAAATGGATAACTTCTTACCCTTTCCCTCTTCTAACG 72 ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| Sbjct 1 TCTCTCTCTCTCTCTCTCCCTGAAAAATGGATAACTTCTTGCCCTTTTCCTCTTCTAACG 60 Query 73 CAAACTCTGTCCAAGAACTCTCTATGGATCCTAACAACAATCGCTCGCACTTCACAACAG 132 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | Sbjct 61 CAAACTCTGTCCAAGAACTCTCTATGGATCTTAACAACAATCGTTCGCACTTCACAACGG 120 Query 133 TCCCTACTTATGATCATCATCAGGCTCAGCCTCATCACTTCTTGCCTCCGTT-TTCATAC 191 |||||||||||||||| | | |||||||||||||||||| |||| || || ||||||| Sbjct 121 TCCCTACTTATGATCA-C--CTGGCTCAGCCTCATCACTTGATGCCGCC-TTATTCATAC 176 Query 192 CCGGTGGAGCAGATGGCGGCGGTGATGAATCCTCAGCCGGTTTACTTATCGGAGTGTTAT 251 ||||||||||||||| ||||||||| |||||| |||||||||||||| |||||| ||||| Sbjct 177 CCGGTGGAGCAGATGACGGCGGTGACGAATCCGCAGCCGGTTTACTTCTCGGAGGGTTAT 236 Query 252 CCTCAGATCCCGGTTACGCAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGT 311 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 237 CCTCAGATCCCGGTTACGAAAACCGGAAGTGAATTCGGTTCTCTGGTTGGTAATCCTTGT 296 Query 312 TTGTGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAAC 371 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TTGAGGCAAGAGAGAGGTGGTTTTCTTGATCCGCGTATGACGAAGATGGCAAGGATCAAC 356 Query 372 AGGAAA-AACGCCATGATGAGATCAAGAAACAACTCTAGCCCTAATTCTAGTCCAAGTGA 430 | |||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 357 A-GAAAGAACGCGATGATCAGATCAAGAAACAACTCTAGCCCTAATTCCAGTCCAAGTGA 415 Query 431 GTTGGTTGATTCAAAGAGACAGCTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTC 490 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 416 GTTGGTTGATTCAAAGAGACAGGTGATGATGCTTAACTTGAAAAATAACGTGCAGATCTC 475 Query 491 CGACAAGAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTG 550 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 CGACAAAAAAGATAGCTACCAACAGTCCACATTTGATAACAAGAAGCTTAGGGTTTTGTG 535 Query 551 TGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTCTACCAAAGAG 610 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 536 TGAGAAGGAATTGAAGAACAGCGATGTTGGGTCACTCGGGAGGATAGTTTTACCAAAGAG 595 Query 611 AGATGCAGAAGCAAATCTTCCGAAGCTATCTGATAAAGAAGGAATCGTTGTACAGATGAG 670 ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 596 AGATGCAGAAGCAAATCTTCCGAAGTTATCTGATAAAGAAGGAATCGTTCTAGAGATGAG 655 Query 671 AGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAG 730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 AGATGTTTTCTCTATGCAGTCTTGGTCTTTCAAATACAAGTTTTGGTCCAATAACAAGAG 715 Query 731 CAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCTGAGATAGG 790 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 716 CAGAATGTATGTCCTCGAGAACACAGGAGAATTTGTGAAGCAAAATGGAGCAGAGATGGG 775 Query 791 AGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATGAATGGAAA 850 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 776 AGACTTTTTAACAATATACGAGGACGAAAGCAAGAATCTCTACTTCGCCATTAATGGGAA 835 Query 851 TTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGGAACCACTACGAAGA 910 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 836 TTCGGGAAAACAAAATGAAGGAAGAGAAAATGAGTCGAGGGAAAGAAACCACTACGAAGA 895 Query 911 GGCAATGCTTGATTACATACCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGG 970 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 896 CACAATGCTTGATTACATATCAAGAGACGAAGAGGAAGCTTCCATTGCAATGCTCATCGG 955 Query 971 AAATCTAAACGATCACTATCCCATCCCTAACGATCTCATGGACCTCACCACTGACCTTCA 1030 ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 956 AAATCTAAATGATCACTATCCCATCCCTAACGATCTCATGGACCTCGCCACTGATCTTCA 1015 Query 1031 GCACCATCAAGCCACGTCCTCATCAATGCCACCTGAGGATCACGCGTACGTGGGTTCATC 1090 | |||||||||||||||||||| ||||||||||||||||||||||| ||||||| || Sbjct 1016 GTACCATCAAGCCACGTCCTCAG---TGCCACCTGAGGATCACGCGTACATGGGTTCGTC 1072 Query 1091 CGATGATCAGGTGAGCTTTAACGACTTTGAGTGGTGGTGATATGGTGGTGGAAGTTCTCA 1150 ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1073 CGATGATCAAGTGAGCTTTAACGACTTTGAGTGGTGGTGATATGGTGG---AAGTTCTCA 1129 Query 1151 AGTTCATA-A-C--CCCCTTTATGAAAATAGACCTTAAGATATACAAAAGAGATTAAAAG 1206 |||||||| | | |||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1130 AGTTCATATAGCTACCCCCTTATGAAAATAGACCTTAAGATATACAAGAGAGATTAAAAG 1189 Query 1207 aaaaaaaaGTTAGTATATTTCATCATATCTCTC-AT-TG-AAGATGAGATTTATATCTAT 1263 ||||| | | ||||||||||||| |||| | || | || |||||||| |||||||| Sbjct 1190 AAAAAGA--T-AGTATATTTCATCGTATC-CGAGATATTCAACATGAGATTCATATCTAT 1245 Query 1264 AATTG-TTTA-ATAGTGTTTTTATTACTTTTCTATCAATATATTAAAGTTTT 1313 ||||| |||| | ||||||||||||| || |||||| |||||||||||| Sbjct 1246 AATTGCTTTATAGAGTGTTTTTATTAATT----ATCAATGTATTAAAGTTTT 1293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49254808764 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5