BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G28305.1

Length=783
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921882 jgi|Araly1|921882|scaffold_103163.1                        699    0.0  


> Ahg921882 jgi|Araly1|921882|scaffold_103163.1
Length=459

 Score =  699 bits (378),  Expect = 0.0
 Identities = 433/459 (94%), Gaps = 6/459 (1%)
 Strand=Plus/Plus

Query  58   taaacacctgaaaaaaaaaaaTGAAATATCTGTCAGTGTTTCTAtttttttATGGCCTAT  117
            ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1    TAAACACCTGGGAAAAAAAAATGAAATATCTATCAGTGTTTCTATTTTTTTATGGCCTAT  60

Query  118  GCATAATTGGTAATGTATA---TGGACGAGCAAACAAGCTCCATATCTGGAACGATCTTG  174
            |||| ||||||||||||||   ||||||||||||||||||||||||||||||||| ||||
Sbjct  61   GCATGATTGGTAATGTATATGGTGGACGAGCAAACAAGCTCCATATCTGGAACGAGCTTG  120

Query  175  ATCCCAATCAGAAGCACTCAGACCTCTTTGTGCAGTGTAAATCTGGAAAGGCCGACATGG  234
            |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct  121  ATCCCAATCAAAAGCACTCACACCTCTTTGTGCAGTGTAAATCTGGAAAGGTCGACATGG  180

Query  235  GAAAACATTATGTCAAGTATGGAAAAATATATCAATTTGATATTAGGGATAATTTTTGGA  294
            ||||||||||||||  |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  181  GAAAACATTATGTCCCGTATGGTAAAATATATCAGTTTGATATTAGGGATAATTTTTGGA  240

Query  295  AGACGACACTTTTTTGGTGTACCTTTAGACATGGGCCTGATTATAGGACTGGCCAACAAT  354
            ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct  241  AGACGACACTTTTTTGGTGTACCTTTAGACATGGGCCTGGTTACAGGATTGGCCAACAAT  300

Query  355  TTGATGTGTATGAATATAAACCGGGTGTGGCTCAAGGAGGCACATATGAATGGACAGCTA  414
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  301  TTGATGTGTATGAATATAAACCGGGTGTAGCTCAAGGAGGCACATATGAATGGACAGCCA  360

Query  415  GAGAAGATGGAATATATTTTAGGTTAAATCAAGGTACGATCCATAAAGTTCATAATTGGA  474
            ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct  361  GAGAAGATGGAATATATTTTAGGTTAAATCAAGGTACGATCCATAAAGTGCACAACTGGA  420

Query  475  AGCCAATGCCACCGTAAGAATTGTTAT---CTTGGTATT  510
            |||||||||||||||||||||||||||   |||||||||
Sbjct  421  AGCCAATGCCACCGTAAGAATTGTTATAATCTTGGTATT  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28897171086


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5