BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28327.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912665 jgi|Araly1|912665|Al_scaffold_0001_2919 750 0.0
> Ahg912665 jgi|Araly1|912665|Al_scaffold_0001_2919
Length=633
Score = 750 bits (406), Expect = 0.0
Identities = 565/638 (89%), Gaps = 26/638 (4%)
Strand=Plus/Plus
Query 403 GTCAAAGTTAGAGGACTTACTTCTTCTTCTGGTGATGGAGATAGTCTATCTTACCCATTT 462
|||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |
Sbjct 4 GTCAAAGTTAGAGGACTTGCTTCTTCTTCTGGTGATGGAGATAGTCCATCTTATCCATCT 63
Query 463 GAAAATGAAACTACCATTCGT-AACAGAGAAAAAGATCGTTTAATGCT-TGAAATTTTTG 520
|| ||| |||||||||||||| || |||||||||| |||||||||| | |||||||||||
Sbjct 64 GAGAATCAAACTACCATTCGTGAA-AGAGAAAAAGCTCGTTTAATG-TATGAAATTTTTG 121
Query 521 GGCCTGAAAGCACGGATGATAGTGATGAAAGTGGCACTGAAGAAGAATTCATGGAGACCA 580
| ||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 122 GTCCTGAAATCACGGATGATAGTGATGAAAATGGCTCTGAAGAAGAATTTATGGAGACCA 181
Query 581 ACTTA------AT-GT--CCTTGGTGAGTCTGCAATGGGGAAAACGTGGGAAACGCAGCA 631
||||| | || |||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 182 ACTTATTGCCCTTGGTGCCCTTGGAGAGTCTGAAATGGGGAAAACGTGGAAAACGCAGCA 241
Query 632 TGCGTAAG-GGCACATGGAAAAGACACATACTCGAAAATCATGTTGGACAACACAAAAAT 690
||||| || |||||||| ||||||||||| || ||||||||||||| |||||| ||||
Sbjct 242 TGCGT-AGTGGCACATGCAAAAGACACATGCTAGAAAATCATGTTGAACAACA-TAAAA- 298
Query 691 ACTCAAGATGAGATGGACATTCAAGTCTTGCTTGTTTCAATGGATGCGTCAGTGATACCA 750
| | | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 A-T--A-ATGAGATGGATATTCAAGTCTTGCTTGTTTCAATGGATACGTCAGTGATACCA 354
Query 751 AATTTGCAGAATCCTCAAGTCAGCTGCAAACCTAACGTGACATTGAAGTCATTATGTGAG 810
|||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 355 AATTTGCAGAATCCTCAAGTAAGCTGCAAACCTAACGTGACAATGAAGTCACTATGTGAG 414
Query 811 ATGTACGTTGCTCCTTACGTTGAGGCACAAGCTGAA-AAGATTGAGATGTATGTGGTTAA 869
||||||||||||||||||||||||||||||| |||| || || ||||||| |||||||||
Sbjct 415 ATGTACGTTGCTCCTTACGTTGAGGCACAAGTTGAAGAA-ATCGAGATGTTTGTGGTTAA 473
Query 870 AGAGTTGGTGGCAGAGTTGACAATGATTGATCCCCACAGAGACAGAGTAGAGATTGTGAA 929
||||||||| |||||| || | ||||||||||||||| |||||||||| | ||||||||
Sbjct 474 CGAGTTGGTGACAGAGTCGAGAGTGATTGATCCCCACAAAGACAGAGTACAAATTGTGAA 533
Query 930 CAAGGAAGACAGTGTTGGTGGATTGA-GA-A-TGTATAACTTCAACAATGGATATGTGAT 986
|| ||||||| |||||||||||||| || | ||||| |||||||||| ||| |||||||
Sbjct 534 GAAAGAAGACAATGTTGGTGGATTGATGAGAATGTATGACTTCAACAAGGGACATGTGAT 593
Query 987 TATTGGATATATGAAGACACCTTAAGATAATCAAGAGT 1024
|||||| ||||||||||| |||| |||||| |||||||
Sbjct 594 TATTGGCTATATGAAGACTCCTTCAGATAACCAAGAGT 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5