BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28335.1
Length=477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313537 jgi|Araly1|313537|fgenesh1_pm.C_scaffold_1002317 333 7e-91
> Ahg313537 jgi|Araly1|313537|fgenesh1_pm.C_scaffold_1002317
Length=246
Score = 333 bits (180), Expect = 7e-91
Identities = 222/242 (92%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 42 AATGTCTCTCAAGTCTCGGTAGCCGTTCTACTTATCTTCTCCATTCTTG-TGTTAGGAAT 100
||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 7 AATCTCTCTCAAGTCTCGGTAGCCGTTCTACTTATCTTCTCCATTCT-GATACTAGGAAT 65
Query 101 AGGAGTCCAAGGAAAAGTACCGTGTCTTTCGCGTATGTTTAATAAAAATAATACGTGTTC 160
||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||| |
Sbjct 66 AGGAGTCCAAGGAAAAGTACCATGTCTTAAGCGTATATTTAACAAAAATAATACGTGTGC 125
Query 161 TTTCCTAAGATGTGAAGCTAATTGTGCACGGAAGTATAAAGGGTATGGTGATTGCCGTCC 220
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 126 TTTCCTAAGATGTGAAGCTAATTGTGCACGGAAATATCAAGGATATGGTGATTGCCGTCC 185
Query 221 AGGAGACAGGCCACACGACAAAAAAGACTC-GTTGTTTTGTTTCTGCAATTATCCTTGTT 279
||||||||| |||||||||||| |||||| || |||||||| |||||||||||||||||
Sbjct 186 AGGAGACAGACCACACGACAAACGAGACTCCGT-GTTTTGTTACTGCAATTATCCTTGTT 244
Query 280 AA 281
||
Sbjct 245 AA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17284481817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5