BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28350.1
Length=2554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg921888 jgi|Araly1|921888|scaffold_103169.1 3223 0.0
Ahg482339 jgi|Araly1|482339|fgenesh2_kg.4__1399__AT2G33840.1 1013 0.0
Ahg913042 jgi|Araly1|913042|Al_scaffold_0001_3296 104 3e-21
> Ahg921888 jgi|Araly1|921888|scaffold_103169.1
Length=2384
Score = 3223 bits (1745), Expect = 0.0
Identities = 1994/2113 (94%), Gaps = 22/2113 (1%)
Strand=Plus/Plus
Query 295 CAGGGACTGATGAAGATCATGAATGTGAACAAGTTGACTTCTGCTGGTTGCCGAGTGAAA 354
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 277 CAGGGACTGATGAAGATCTTGAATGTGAACAAATTGACTTCTGCTGGTTGCCGAGTCAAA 336
Query 355 ATATGGATTGCAGATTGGTTTGCATATATGAACAATAAGTTGGGAGGTGATTTGAAGAAA 414
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 337 ATTTGGATTGCAGATTGGTTTGCATATATGAACAACAAGTTAGGAGGTGATTTGAAGAAA 396
Query 415 ATCAGGGTGGTTGGAGAATATTTTAAGGAGATATTTCAGGCAGCCGGGATGAATAGTGAG 474
|||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 397 ATCAGGGTGGTTGGAGAATATTATAAGGAGATATTTCAGGCAGCTGGGATGAACAGTGAG 456
Query 475 AATGTAGAGTTTCTATGGTCATCCGATGAAATAAATGCTAAGGGAGATGAATACTGGCCT 534
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 457 AATGTAGAGTTTCTATGGTCATCCGATGAAATAAATGCTAGGGGAGATGAGTACTGGCCT 516
Query 535 CTTGTGATGGACATTGCCTGCAGAAATAGTCTCGCCCAAATAAAACGGTGTATGCCTATT 594
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTTGTGATGGACATTGCGTGCAGAAATAGTCTCGCCCAAATAAAACGGTGTATGCCTATT 576
Query 595 ATGGGCTTGAGTGAAAATGAGGAGCTGAGTGCAGCTCACATTCTGTATGTGTGTATGCAA 654
||||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 577 ATGGGTTTGAGTGAAACTGAGGAGCTGAGTGCAGCTCACATTCTCTATGTATGTATGCAA 636
Query 655 TGTGCCGATACTTTCTTCCTCGAGGCTGATATTTGCCAGCTTGGGATGGATCAGCAAACA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TGTGCCGATACTTTCTTCCTCGAGGCTGATATTTGCCAGCTTGGGATGGATCAGCAAACA 696
Query 715 GTTAATCTGCTAGCAAGAGATTATTGTGATGTCGTAAAGAGAGAAAACAAACCTGTCATC 774
|| |||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 697 GTAAATCTGCTAGCAAGAGATTATTGTGATGCCGTTAAGAGGGGAAACAAACCTGTCATC 756
Query 775 TTGTCCCACCATATGCTTCCCGGTCTTCAACAAGGACAGAAAAAGATGTCTAAGAGTGAT 834
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 757 TTGTCCCACCATATGCTTCCTGGTCTTCAACAAGGACAGAAAAAGATGTCTAAGAGTGAT 816
Query 835 CCTTCATCAGCCATCTTCATGGAAGATGAAGAGGCTGAAGTTAATGTGAAGATTAAGAAA 894
||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 817 CCTTCCTCTGCTATCTTCATGGAAGATGAAGAGGCTGAAGTTAATGTTAAGATTAAGAAA 876
Query 895 GCTTATTGCCCTCCGGATATAGTGGAAGGTAACCCATGCCTTGAATACGTCAAGCACATA 954
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 877 GCTTATTGCCCCCCGGATATTGTGGAAGGTAACCCATGCCTTGAATACGTGAAATACATC 936
Query 955 ATTTTACCCTGGTTCAGTGAATTCACAGTTGAGCGAGATGAAAAGTACGGTGGTAACAGG 1014
|||||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||
Sbjct 937 ATTTTACCCTGGTTCAGTGAGTTCACAGTTGAGAGAGATGACAAGTATGGCGGTAACAGG 996
Query 1015 ACCTTCAAAAGCTTTGAAGACATCACCACTGACTATGAAAGCGGCCAGTTGCACCCAAAG 1074
||||||||||||||||||||||| || |||||||||||||||| |||||||||| |||
Sbjct 997 ACCTTCAAAAGCTTTGAAGACATTGCCGTTGACTATGAAAGCGGCGAGTTGCACCCTAAG 1056
Query 1075 GATTTGAAGGACGCTCTGTCAAAAGCGTTGAATAAGATACTGCAACCTGTTCGTGATCAT 1134
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1057 GATTTGAAGGACGCTCTGTCGAAAGCATTGAATAAGATACTACAACCTGTTCGTGATCAT 1116
Query 1135 TTCAAAACCAACAGCCGCGCCAAGAATCTGCTCAAACAGGTCAAGGGTTACAAAGTCACC 1194
|||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||
Sbjct 1117 TTCAAAACCAACAGCCGCACCAAAAATCTGCTCAAACAGGTTAAGGGTTACAAAATCACC 1176
Query 1195 AGAGTCATACCAACAGCTTCATCTACAAAGGAGGAGGATCTTTCCATCAACACAT----- 1249
|||||||| |||||||||||||| ||| | |||||||||||||| |||||||||
Sbjct 1177 AGAGTCATGCCAACAGCTTCATCCACAGATAAGGAGGATCTTTCCGTCAACACATCAAGC 1236
Query 1250 -CAGCATCTTCTTCGGCCGCCGGATTACAGATGAGCGAGGAGGCCGAGATGAAATACAAG 1308
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1237 GCAGCATCTTCTTCGGATACCGGATTACAGGTGAGCGAGGAGGCCGAGATGAAATACAAG 1296
Query 1309 ATTGTGAGGAGTATTGGTGAGGAATGCATACAAGAGGATGAGCTGAAGAATCTTCTAGCC 1368
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 ACTGTGAGGAGTATTGGTGAGGAATGCATACAAGAGGATGAGCTGAAGAATCTTCTAGCC 1356
Query 1369 AAGAAGCCTGCTCCTATCTGCTACGATGGTTTTGAACCATCAGGAAGGATGCACATCGCC 1428
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1357 AAGAAGCCTGCTCCGATCTGCTATGATGGTTTTGAACCATCAGGAAGGATGCACATCGCC 1416
Query 1429 CAGGGAGTTATGAAGGTCACCAATGTGAACAAATTGACTTCAGCTGGTTGCCAAGTGAAA 1488
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 CAGGGAGTGATGAAGGTCACCAATGTGAACAAATTGACTTCAGCTGGTTGCCAAGTGAAA 1476
Query 1489 ATTTGGATAGCAGATTGGTTTGCTCAATTGAACAACAAGTTGGGAGGTGACTTGGAGAGA 1548
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 ATTTGGATTGCAGATTGGTTTGCTCAATTGAACAACAAGTTGGGAGGTGACTTGGAGAGA 1536
Query 1549 ATTAGAGTGGTAGGAGAATACTTCAAGGAAATTTGGCAAGCAGGTGGGATGAACAATGAC 1608
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 ATTAGAGTGGTTGGAGAATACTTCAAGGAAATTTGGCAAGCAGGTGGGATGAACAATGAC 1596
Query 1609 AAAGTAGAGTTTCTTTGGGCATCAGACGAAATAAATGGCAAGGGGAGTAAGTATTGGCCT 1668
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1597 AAAGTAGCGTTTCTTTGGGCATCAGACGAAATAAATGGCAAGGGGAATAAGTATTGGCCT 1656
Query 1669 CTTGTGATGGACATTGCTCGTAGAAACAACCTACGTCGAATCTTGAGGTGTGGGCAGATT 1728
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1657 CTTGTGATGGACATTGCTCGTAGAAACAACCTCCGTCGAATCTTGAGGTGTGGGCAGATT 1716
Query 1729 ATGGGACGTAGTGAGACTGAGGTGCTGAGTGCAGCTCAAATTCTTTACCCCTGTATGCAG 1788
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1717 ATGGGACGTAGTGAGACCGAGGTGCTGAGTGCAGCTCAAATTCTTTACCCGTGTATGCAG 1776
Query 1789 TGTGCGGATATTTTCTTACTTGAGGCTGATATTTGCCAGCTCGGG-ATGGATCAGCGAAA 1847
|||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||
Sbjct 1777 TGTGCGGATATTTTCTTACTCGAGGCTGATATTTGCCAGCT-GGGTATGGATCAGCGGAA 1835
Query 1848 AGTAAACATGCTAGCAAGAGAATACTGTGCTGACATTAAGAGGAAA-AATAAACCCATCA 1906
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1836 AGTAAACATGCTAGCAAGAGAATACTGTGCTGACATTAAGAG-AAAGAATAAACCCATCA 1894
Query 1907 TCTTGTCCCACCATATGCTTCCTGGTCTCCAACAAGGACAAGAAAAGATGTCCAAAAGTG 1966
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1895 TCTTGTCCCACCATATGCTTCCTGGTCTCCAACAAGGACAAGAAAAGATGTCTAAAAGCG 1954
Query 1967 ATCCATCATCTGCAATATTTATGGAAGATGAGGAGGCTGATGTTAATGAGAAGATCAGCA 2026
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1955 ATCCATCATCTGCAATATTTATGGAAGATGAGGAGGCTGATGTTAATGAGAAAATCAACA 2014
Query 2027 AAGCCTATTGCCCTCCGAAAACTGTGGAAGGCAATCCATGTCTCGAGTATGTCAAATACA 2086
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 2015 AAGCTTATTGCCCTCCGAAAACTGTGGAAGGCAATCCATGTCTCGAATACGTCAAATACA 2074
Query 2087 TTGTTCTACCACGATTCAATGAGTTCAAGGTTGAAAGTGAAAAGAATGGCGGCAATAAGA 2146
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2075 TTGTTCTACCACGATTCAATGAGTTCAAGGTTGAAAGTGAAAAGAATGGGGGCAACAAGA 2134
Query 2147 CCTTCAACAGCTTTGAAGATATTGTCGCCGACTACGAGACCGGCGAGCTACATCCCGAGG 2206
||||||| |||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||
Sbjct 2135 CCTTCAAAAGCTTTGAGGATATTGTTGCCGACTACGAGAGCGGCGAGCTGCATCCTGAGG 2194
Query 2207 ATCTGAAGAAAGCTCTGATGAAAGCATTGAATATAACTCTGCAACCTGTTCGCGATCACT 2266
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2195 ATCTGAAGAAAGCCCTGATGAAAGCATTGAATATAACTCTGCAACCTGTTCGCGATCATT 2254
Query 2267 TTAAAACCAACGAGCGTGCCAAAAATCTACTGGAACAGGTCAAGGCTTTTAGAGTCACCA 2326
|||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2255 TTAAAACCAACGAGCGTGCCAAAAATCTACTGGAACAGGTCAAG------AG--TCACCA 2306
Query 2327 GGTGAAGTTGCAGAAGCAAAGA-GAGTATTTGTGGACATCAGTTA-AAGAGCTTTCCTAA 2384
||||||||||||||||||| || || |||||||| | | |||| || |||||||||||
Sbjct 2307 GGTGAAGTTGCAGAAGCAACGAAGAATATTTGTGTTCGTT-GTTACAA-AGCTTTCCTAA 2364
Query 2385 GGATTTTGGTGGT 2397
||||||||| |||
Sbjct 2365 GGATTTTGGGGGT 2377
Score = 676 bits (366), Expect = 0.0
Identities = 746/924 (81%), Gaps = 47/924 (5%)
Strand=Plus/Plus
Query 1429 CAGGGAGTTATGAAGGTCACCAATGTGAACAAATTGACTTCAGCTGGTTGCCAAGTGAAA 1488
|||||| | |||||| || |||||||||||||||||||| |||||||||| ||| |||
Sbjct 277 CAGGGACTGATGAAGATCTTGAATGTGAACAAATTGACTTCTGCTGGTTGCCGAGTCAAA 336
Query 1489 ATTTGGATAGCAGATTGGTTTGCTCA-AT-TGAACAACAAGTTGGGAGGTGACTTGGAGA 1546
|||||||| ||||||||||||| || || ||||||||||||| |||||||| ||| |||
Sbjct 337 ATTTGGATTGCAGATTGGTTTG--CATATATGAACAACAAGTTAGGAGGTGATTTGAAGA 394
Query 1547 GAATTAGAGTGGTAGGAGAATACTT-CAAGGA-A-ATTTGGCAAGCAGGTGGGATGAACA 1603
||| || ||||| |||||||| || ||||| | |||| || |||| |||||||||||
Sbjct 395 AAATCAGGGTGGTTGGAGAATA-TTATAAGGAGATATTT--CAGGCAGCTGGGATGAACA 451
Query 1604 ATGACAAAGTAGAGTTTCTTTGGGCATCAGACGAAATAAATGGCAAGGGGAG-TAAGTAT 1662
||| || ||||||||||| ||| |||| || ||||||||| || ||||||| | ||||
Sbjct 452 GTGAGAATGTAGAGTTTCTATGGTCATCCGATGAAATAAAT-GCTAGGGGAGATGAGTAC 510
Query 1663 TGGCCTCTTGTGATGGACATTGC-TCGTAGAAACAACCTACG-TCGAATCTTGA-GGTGT 1719
||||||||||||||||||||||| | | ||||| | || || | ||| | |||||
Sbjct 511 TGGCCTCTTGTGATGGACATTGCGT-GCAGAAATAGTCT-CGCCCAAAT-AAAACGGTGT 567
Query 1720 GGGCAGATTATGGGACGT-AGTGAGACTGAGGTGCTGAGTGCAGCTCAAATTCTTTACCC 1778
|| |||||||| | ||||| ||||||| ||||||||||||||| ||||| ||
Sbjct 568 ATGCCTATTATGGG-TTTGAGTGAAACTGAGGAGCTGAGTGCAGCTCACATTCTCTATGT 626
Query 1779 CTGTATGCAGTGTGCGGATATTTTCTTACTTGAGGCTGATATTTGCCAGCTCGGGATGGA 1838
|||||||| ||||| |||| |||||| || |||||||||||||||||||| ||||||||
Sbjct 627 ATGTATGCAATGTGCCGATACTTTCTTCCTCGAGGCTGATATTTGCCAGCTTGGGATGGA 686
Query 1839 TCAGCGAAA-AGTAAA-CATGCTAGCAAGAGAATACTGTGCTGACATTAAGAGGAAAAAT 1896
||||| ||| |||||| | ||||||||||||| || |||| || | |||||||| |||
Sbjct 687 TCAGC-AAACAGTAAATC-TGCTAGCAAGAGATTATTGTGATGCCGTTAAGAGGGGAAAC 744
Query 1897 AAACCCATCATCTTGTCCCACCATATGCTTCCTGGTCTCCAACAAGGACAAGAAAA-GAT 1955
||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 745 AAACCTGTCATCTTGTCCCACCATATGCTTCCTGGTCTTCAACAAGGACA-GAAAAAGAT 803
Query 1956 GTCCAAAAGTGATCCATCATCTGCAATATTTATGGAAGATGAGGAGGCTGATGTTAATGA 2015
||| || |||||||| || ||||| || || ||||||||||| |||||||| |||||||
Sbjct 804 GTCTAAGAGTGATCCTTCCTCTGCTATCTTCATGGAAGATGAAGAGGCTGAAGTTAATGT 863
Query 2016 GAAGATCA-GCAAAGCCTATTGCCCTCCGAAAACTGTGGAAGGCAATCCATGTCTCGAGT 2074
||||| | | ||||| |||||||| ||| | | ||||||||| || ||||| || || |
Sbjct 864 TAAGATTAAG-AAAGCTTATTGCCCCCCGGATATTGTGGAAGGTAACCCATGCCTTGAAT 922
Query 2075 ATGTCAAATACATTGTTCTACCAC-GATTCAATGAGTTCA-AGGTTGA-A-AG-TGAAAA 2129
| || |||||||| || |||| | | |||| |||||||| || |||| | || ||| ||
Sbjct 923 ACGTGAAATACATCATTTTACC-CTGGTTCAGTGAGTTCACAG-TTGAGAGAGATGACAA 980
Query 2130 GAATGGCGGCAATAAGACCTTCAACAGCTTTGAAGATATTGTCGCCGACTACGAGACCGG 2189
| ||||||| || | ||||||||| ||||||||||| |||| || ||||| || | |||
Sbjct 981 GTATGGCGGTAACAGGACCTTCAAAAGCTTTGAAGACATTGCCGTTGACTATGAAAGCGG 1040
Query 2190 CGAGCTACATCCCGA-GGATCTGAAGAAAGCTCTGAT-GAAAGCATTGAATATA-ACT-C 2245
|||| | || ||| | |||| ||||| | |||||| | |||||||||||||| | | | |
Sbjct 1041 CGAGTTGCA-CCCTAAGGATTTGAAGGACGCTCTG-TCGAAAGCATTGAATA-AGA-TAC 1096
Query 2246 TGCAACCTGTTCGCGATCACTTT-AAAACCAACGAGC-GTGCCAAAAATCTACTGGAACA 2303
| ||||||||||| ||||| ||| ||||||||| ||| | |||||||||| || ||||
Sbjct 1097 TACAACCTGTTCGTGATCA-TTTCAAAACCAAC-AGCCGCACCAAAAATCTGCTCAAACA 1154
Query 2304 GGTCAAGGCTTTTAGAGTCACCAG 2327
||| |||| || | | |||||||
Sbjct 1155 GGTTAAGGGTTACAAAATCACCAG 1178
Score = 385 bits (208), Expect = 1e-105
Identities = 226/235 (96%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 64 GAAACAGCTTCATCGTCAGAGATGGAGGCTCTTTCCATCAACGCACCAACTCAGGCTTCT 123
||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||
Sbjct 1 GAAACAGATTCATCGTCAGAGATGGAGACTCTTTCCATCAATTCACCAACTCAGGATTCT 60
Query 124 ACTTTGCCCTCCGGATTACAAATAAGTAAGGAGGTCGAAAAAAGATACAATGTAGTTAGA 183
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ACTTTGCCCTCCGGATTACAAATAAGCGAGGAGGTCGAAAAAAGATACAATGTAGTTAGA 120
Query 184 AGTGTTGGTGAGCAATGCATACATGATGATGAGCTGAAGGATCTTCTGGCTAAGAAGGCT 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTGTTGGCGAGCAATGCATACATGATGATGAGCTGAAGGATCTTCTGGCTAAGAAGGCT 180
Query 244 GCTCCGGTTTGCTACGACGGTTTTGAACCATCAGGGAGGATGCATATCGCTCAGG 298
||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCCTGTTTGCTACGACGGTTTTGAACCATCAGGGAGGATGCATATCGCTCAGG 235
> Ahg482339 jgi|Araly1|482339|fgenesh2_kg.4__1399__AT2G33840.1
Length=1331
Score = 1013 bits (548), Expect = 0.0
Identities = 941/1127 (83%), Gaps = 42/1127 (4%)
Strand=Plus/Plus
Query 1235 TTTCCATCAACACATCAGCATCTTCTTCGGCCGCCGGATTACAGATGAGCGAGGAGGCCG 1294
||| ||||||| || ||||||||||||| ||| |||||||||||||| || || | |
Sbjct 128 TTT-CATCAACTCA--AGCATCTTCTTCGTCCGATGGATTACAGATGAGTGAAGAAGTAG 184
Query 1295 AGATGAAATACAAGATTGTGAGGAGTATTGGTGAGGAATGCATACAAGAGGATGAGCTGA 1354
||| || |||||| ||||| ||||| || ||||||||||| ||||||||||| ||||| |
Sbjct 185 AGAAGAGATACAAAATTGTTAGGAGCATCGGTGAGGAATGTATACAAGAGGAAGAGCTAA 244
Query 1355 AGAATCTTCTAGCCAAGAAGCCTGCTCCTATCTGCTACGATGGTTTTGAACCATCAGGAA 1414
|||||||||| || |||||| || |||| || |||||||| || ||||||||||||||||
Sbjct 245 AGAATCTTCTTGCTAAGAAGGCTACTCCGATTTGCTACGACGGCTTTGAACCATCAGGAA 304
Query 1415 GGATGCACATCGCCCAGGGAGTTATGAAGGTCACCAATGTGAACAAATTGACTTCAGCTG 1474
|||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 305 GGATGCACATTGCTCAGGGAGTTATGAAGGTCATCAATGTGAACAAAATGACTTCAGCTG 364
Query 1475 GTTGCCA-AGTGAAAATTTGGATAGCAGATTGGTTTGCTCAATTGAACAACAAGTTGGGA 1533
|||| || |||||| |||||||| || |||||||||||||| |||||||| || |||||
Sbjct 365 GTTG-CAGAGTGAAGATTTGGATTGCTGATTGGTTTGCTCAGTTGAACAATAAAATGGGA 423
Query 1534 GGTGACTTGGAG-AGAATTAGAGTGGTAGGAGAATACTT-CAAGGAAATTTGGCAA-GCA 1590
||||||||| || || |||||||| || ||||||||||| ||| || || ||| || ||
Sbjct 424 GGTGACTTGAAGAAG-ATTAGAGTCGTTGGAGAATACTTCCAA-GAGATATGG-AAGGCT 480
Query 1591 GGTGGGATGAACAATGACAAAGTAGAGTTTCTT-TGGGCATCAGACGAAATAAATGGC-A 1648
| ||||||| ||||||| |||||||||||| || ||| | || || ||||| ||| | |
Sbjct 481 GCTGGGATGGACAATGATAAAGTAGAGTTT-TTGTGGTCTTCTGAAGAAATCAAT-TCTA 538
Query 1649 AGG-GGAGTAAGTATTGGCCTCTTGTGATGGACATTGCTCGTAGAAACAACCTACGTCGA 1707
||| ||| ||||||||||||||||||||||||||||||||| | |||||| | | | |
Sbjct 539 AGGCGGA-TAAGTATTGGCCTCTTGTGATGGACATTGCTCGCAAAAACAAGTTGCCTAGG 597
Query 1708 ATCTTGAGGTGTGGGCAGATTATGGGACGTAGTGAGACTGAGGTGCTGAGTGCAGCTCAA 1767
|||| ||||||| |||||||||||||||||||||||| || | |||||||| || ||
Sbjct 598 GTCTTAAGGTGTGTGCAGATTATGGGACGTAGTGAGACCGATGAACTGAGTGCTGCCCAG 657
Query 1768 ATTCTTTACCCCTGTATGCAGTGTGCGGATATTTTCTTACTTGAGGCTGATATTTGCCAG 1827
|| |||||||| || ||||| ||||| |||||||| || |||||||||||||||||||||
Sbjct 658 ATCCTTTACCCATGCATGCAATGTGCAGATATTTTTTTCCTTGAGGCTGATATTTGCCAG 717
Query 1828 CTCGGGATGGATCAGCGAAAAGTAAACATGCTAGCAAGAGAATACTGTGCTGACATTAAG 1887
|| ||||||||||| ||||||||||| ||||||| ||||||||||||| |||||| |||
Sbjct 718 CTTGGGATGGATCAAAGAAAAGTAAACGTGCTAGCGAGAGAATACTGTGATGACATAAAG 777
Query 1888 AGGAAAAATAAACCCATCATCTTGTCCCACCATATGCTTCCTGGTCTCCAACAAGGACAA 1947
|||||||| ||||| || |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 778 AGGAAAAACAAACCGATAATCTTGTCACACCATATGCTTCCTGGTCTACAACAAGGACAA 837
Query 1948 GAAAAGATGTCCAAAAGTGATCCATCATCTGCAATATTTATGGAAGATGAGGAGGCTGAT 2007
||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 838 GAAAAGATGTCCAAAAGTGATCCATTATCTGCCATCTTTATGGAAGATGAGGAGGCTGAA 897
Query 2008 GTTAATG-AGAAGATCA-GCAAAGCCTATTGCCCTCCGAAAACTGTGGAAGGCAATCCAT 2065
||||||| | ||||||| | ||||| || || ||||| |||| |||| ||||||||||||
Sbjct 898 GTTAATGTA-AAGATCAAG-AAAGCTTACTGTCCTCCAAAAATTGTGCAAGGCAATCCAT 955
Query 2066 GTCTCGAGTATGTCAAATACATTGTTCTACCACGATTCAATGAGTTCA-AGGTTGA---A 2121
| || || || | |||||||| ||||||| | || ||||||||| || |||| |
Sbjct 956 GCCTTGAATACATTAAATACATCATTCTACCGTGGTTTGATGAGTTCACAG-TTGAGCGA 1014
Query 2122 AGTGAA-AAGAATGGCGGCAATAAGACCTTCAACAGCTTTGAAGATATTG-TCGCCGACT 2179
| |||| || | |||||| || ||||||| ||| ||||||||||| |||| | || || |
Sbjct 1015 AATGAAGAATA-TGGCGGTAACAAGACCTACAAAAGCTTTGAAGAGATTGCT-GCTGAAT 1072
Query 2180 ACGAGACCGGCGAGCTACATCCC-GAGGATCTGAAGAAAG-CTCTGATGAAAGCATTGAA 2237
| |||| ||| ||| | || ||| | |||||| ||||||| | |||||||| || |||||
Sbjct 1073 ATGAGAGCGGAGAGTTGCA-CCCTGGGGATCTAAAGAAAGGC-CTGATGAACGCGTTGAA 1130
Query 2238 TATA-ACTCT-GCAACCTGTTCGCGATCACTTTAAAACCA-ACG-AGCGTGCCAAAAATC 2293
|| | | ||| |||||||||||| |||||||| ||||| | ||| | || ||||| ||||
Sbjct 1131 TA-AGA-TCTTGCAACCTGTTCGTGATCACTTCAAAAC-AGACGCA-CGGGCCAAGAATC 1186
Query 2294 TACTGGAACAGGTCAAGGCTTTTAGAGTCACCAGGTGAAGTTGCAGA 2340
| || ||||| ||||||||| ||||||||||| | || || ||||
Sbjct 1187 TGCTCAAACAGATCAAGGCTTACAGAGTCACCAGATAAAATTACAGA 1233
Score = 822 bits (445), Expect = 0.0
Identities = 922/1147 (80%), Gaps = 53/1147 (5%)
Strand=Plus/Plus
Query 76 TCGTCAGAGATGGAGGCTCTTTCCATCAACGCACCAACTCAGGCTTCTACTTTGCCCTCC 135
||||| |||||||||||| ||||| | || ||||||| || ||| ||| | ||
Sbjct 103 TCGTCGGAGATGGAGGCTGTTTCCGT---TTCATCAACTCAAGCATCTTCTTCGTCCGAT 159
Query 136 GGATTACAAATAAGT-AAGGAGGTCGAAAAAAGATACAATGTAGTTAGAAGTGTTGGTGA 194
|||||||| || ||| || || || || || |||||||| | ||||| || | |||||
Sbjct 160 GGATTACAGATGAGTGAA-GAAGTAGAGAAGAGATACAAAATTGTTAGGAGCATCGGTGA 218
Query 195 GCAATGCATACATGATGATGAGCTGAAGGATCTTCTGGCTAAGAAGGCTGCTCCGGTTTG 254
| |||| ||||| || || ||||| ||| ||||||| |||||||||||| ||||| ||||
Sbjct 219 GGAATGTATACAAGAGGAAGAGCTAAAGAATCTTCTTGCTAAGAAGGCTACTCCGATTTG 278
Query 255 CTACGACGGTTTTGAACCATCAGGGAGGATGCATATCGCTCAGGGACTGATGAAGATCAT 314
||||||||| |||||||||||||| |||||||| || ||||||||| | |||||| ||||
Sbjct 279 CTACGACGGCTTTGAACCATCAGGAAGGATGCACATTGCTCAGGGAGTTATGAAGGTCAT 338
Query 315 GAATGTGAACAAGTTGACTTCTGCTGGTTGCCGAGTGAAAATATGGATTGCAGATTGGTT 374
||||||||||| ||||||| ||||||||| ||||||| || |||||||| ||||||||
Sbjct 339 CAATGTGAACAAAATGACTTCAGCTGGTTGCAGAGTGAAGATTTGGATTGCTGATTGGTT 398
Query 375 TGCAT-A-TATGAACAATAAGTTGGGAGGTGATTTGAAGAAAATCAGGGTGGTTGGAGAA 432
||| | | | |||||||||| |||||||||| |||||||| || || || |||||||||
Sbjct 399 TGC-TCAGT-TGAACAATAAAATGGGAGGTGACTTGAAGAAGATTAGAGTCGTTGGAGAA 456
Query 433 TA-TTTTAAGGAGATATTTCAGGCAGCCGGGATGAATAGTGAGAATGTAGAGTTTCTATG 491
|| || || ||||||| |||| || |||||| | | ||| || ||||||||| | ||
Sbjct 457 TACTTCCAA-GAGATATGGAAGGCTGCTGGGATGGACAATGATAAAGTAGAGTTTTTGTG 515
Query 492 GTCATCCGATGAAATAAATGCTAAGG-GAGATGAA-TACTGGCCTCTTGTGATGGACATT 549
||| || || ||||| ||| |||||| | ||| || || |||||||||||||||||||||
Sbjct 516 GTCTTCTGAAGAAATCAATTCTAAGGCG-GAT-AAGTATTGGCCTCTTGTGATGGACATT 573
Query 550 GCCT-GCAGAAA-TAGTCTCGCCCA-AAT-AAAACGGTGTATGCCTATTATGGG-CTTGA 604
| || ||| ||| ||| | ||| | | || ||||| ||| |||||||| | | |
Sbjct 574 G-CTCGCAAAAACAAGT-T-GCCTAGGGTCTTAA-GGTGTGTGCAGATTATGGGACGT-A 628
Query 605 GTGAAAATGAGGAGCTGAGTGCAGCTCACATTCTGTATGTGTGTATGCAATGTGCCGATA 664
|||| | || || |||||||| || || || || || || ||||||||||| ||||
Sbjct 629 GTGAGACCGATGAACTGAGTGCTGCCCAGATCCTTTACCCATGCATGCAATGTGCAGATA 688
Query 665 CTTTCTTCCTCGAGGCTGATATTTGCCAGCTTGGGATGGATCA--GCAAACAGTTAATC- 721
||| ||||| |||||||||||||||||||||||||||||||| | ||| ||| || |
Sbjct 689 TTTTTTTCCTTGAGGCTGATATTTGCCAGCTTGGGATGGATCAAAG-AAA-AGTAAA-CG 745
Query 722 TGCTAGCAAGAGATTATTGTGATGTCGTAAAGAGAGAAAA-CAAACCTG-TCATCTTGTC 779
||||||| ||||| || ||||||| | ||||||| ||||| |||||| | | ||||||||
Sbjct 746 TGCTAGCGAGAGAATACTGTGATGACATAAAGAG-GAAAAACAAACC-GATAATCTTGTC 803
Query 780 CCACCATATGCTTCCCGGTCTTCAACAAGGACA-GAAAAAGATGTCTAAGAGTGATCC-T 837
|||||||||||||| ||||| ||||||||||| ||||| |||||| || |||||||| |
Sbjct 804 ACACCATATGCTTCCTGGTCTACAACAAGGACAAGAAAA-GATGTCCAAAAGTGATCCAT 862
Query 838 TCATCAGCCATCTTCATGGAAGATGAAGAGGCTGAAGTTAATGTGAAGATTAAGAAAGCT 897
| ||| |||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 863 T-ATCTGCCATCTTTATGGAAGATGAGGAGGCTGAAGTTAATGTAAAGATCAAGAAAGCT 921
Query 898 TATTGCCCTCCGGATATAGTGGAAGGTAACCCATGCCTTGAATACGTCAAGCACATAATT 957
|| || ||||| | || ||| |||| || ||||||||||||||| | || |||| |||
Sbjct 922 TACTGTCCTCCAAAAATTGTGCAAGGCAATCCATGCCTTGAATACATTAAATACATCATT 981
Query 958 TTACCCTGGTTC-AGTGAATTCACAGTTGAGCGAGATGAA-AAGTACGGTGGTAACAGGA 1015
|||| ||||| | ||| ||||||||||||||| ||||| || || || ||||||| ||
Sbjct 982 CTACCGTGGTTTGA-TGAGTTCACAGTTGAGCGAAATGAAGAA-TATGGCGGTAACAAGA 1039
Query 1016 CCTTCAAAAGCTTTGAAGACATCACCACTGACTATGAAAGCGGCCAGTTGCACCCAAAGG 1075
||| ||||||||||||||| || | |||| ||||| ||||| |||||||||| ||
Sbjct 1040 CCTACAAAAGCTTTGAAGAGATTGCTGCTGAATATGAGAGCGGAGAGTTGCACCCTGGGG 1099
Query 1076 ATTTGAAGGACG-CTCTG-TCAAAAGCGTTGAATAAGATACT-GCAACCTGTTCGTGATC 1132
|| | ||| | | | ||| | || |||||||||||||| || |||||||||||||||||
Sbjct 1100 ATCTAAAGAAAGGC-CTGATGAAC-GCGTTGAATAAGAT-CTTGCAACCTGTTCGTGATC 1156
Query 1133 ATTTCAAAACCA-ACAGC-CGCGCCAAGAATCTGCTCAAACAGGTCAAGGGTTACAAAGT 1190
| |||||||| | || || || ||||||||||||||||||||| |||||| ||||| |||
Sbjct 1157 ACTTCAAAAC-AGAC-GCACGGGCCAAGAATCTGCTCAAACAGATCAAGGCTTACAGAGT 1214
Query 1191 CACCAGA 1197
|||||||
Sbjct 1215 CACCAGA 1221
> Ahg913042 jgi|Araly1|913042|Al_scaffold_0001_3296
Length=351
Score = 104 bits (56), Expect = 3e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 74 CATCGTCAGAGATGGAGGCTCTTTCCATCAACGCACCAACTCAGGCTTCTACTTTGCCCT 133
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 20 CATTGTCAGAGATGGAGGCTCTTTCCATCAACGCACCAACTCCGGATTCTACTTTGCCCT 79
Query 134 CCGGATTACAAA 145
||||| || |||
Sbjct 80 CCGGAGTA-AAA 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96292139360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5