BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28360.1
Length=893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473050 jgi|Araly1|473050|fgenesh2_kg.1__3004__AT1G28360.1 822 0.0
> Ahg473050 jgi|Araly1|473050|fgenesh2_kg.1__3004__AT1G28360.1
Length=631
Score = 822 bits (445), Expect = 0.0
Identities = 592/657 (90%), Gaps = 33/657 (5%)
Strand=Plus/Plus
Query 8 CAACAAAGCAAAACctctttcttctcttctccactt---tctctctagattctctcatat 64
|||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 2 CAACAAAGCAAAACCTCTTTCTTCTCTTCTCC-TTTCACTCTCTCTAGATTCTCTC--GT 58
Query 65 ttcccctcttGAGAGTCTAACAATGGCGTCAACGACGTGTGCAAGAGAGGTGCATTACAG 124
|| |||| ||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 59 TT--CCTC-TGAGATTGTAACAATGGCGTCTACGACGTGTGCAAGAGAGGTGCATTACAG 115
Query 125 AGGAGTCAGAAAGAGACCTTGGGGTCGCTACGCTGCTGAGATACGAGATCCTTGGAAGAA 184
|||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||
Sbjct 116 AGGAGTAAGAAAGAGACCATGGGGTCGTTACGCTGCTGAGATAAGAGATCCTTGGAAGAA 175
Query 185 AACTAGGGTTTGGTTAGGCACTTTCGACACTCCCGAAGAAGCTGCTCTTGCTTACGACGG 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 176 AACTAGGGTTTGGTTAGGCACTTTCGACACTCCCGAAGAAGCCGCTCTTGCTTACGACGG 235
Query 245 CGCTGCTCGTTTCCTCCGTGGTATCAAAGCCAAAACTAACTTCCCTtctcctctctctct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CGCTGCTCGTTTCCTCCGTGGTATCAAAGCCAAAACTAACTTCCCTTCTCCTCTCTCTCT 295
Query 305 cGACCTCAACCACCTCCCTTCCGCTCCCTCAGCCGCAACCGCCGCCGCAAATAACCAACC 364
||||||||||||||||||||||||||||| || | | ||||| |||||||||||
Sbjct 296 GGACCTCAACCACCTCCCTTCCGCTCCCTC--CC-C--C-GCCGC---AAATAACCAAC- 345
Query 365 CCACCAACACCAACAGCTCTGGTTCGCTGCGCCTCCTCCTGTTCCTCCAAGCTCCGACCA 424
||||||| |||||||||||| |||||||||||| |||||| |||| | |
Sbjct 346 --ACCAACA------GCTCTGGTTCGCCGCGCCTCCTCCTCCTCCTCCTC-CTCCAATC- 395
Query 425 TC--ATCACCAACACCACCGCATTTTTCTCCGAACCGGTGTGCTAAACGACAAAACTTCA 482
|| | ||||| ||||| || || ||||||||||||||||||||||||||||||| ||||
Sbjct 396 TCCGACCACCATCACCAACGGATATTTCTCCGAACCGGTGTGCTAAACGACAAAAATTCA 455
Query 483 GATTACTCTTCTACAGAAGCGCCGCTTTACTTCACCTCCTCGCCTAACACAGCCACGTCA 542
|||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 456 GATTACTCCTCTACCGAAGCGCCGCTTTACTTCACCTCCTCGCCTAACGCAGCCACGTCG 515
Query 543 TCGCCTGGTTATCAAGTGGTTGGGTTTCCGATGATGAATTCTTCTCCTTCCCCTGTTACG 602
||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||
Sbjct 516 TCGCCTGGTTATCAAGTGGTTGGGTTTCCGATGATGAGTTCGTCTCCATCCCCTGTTACG 575
Query 603 GTGAGACGTGG-CTTAGCCATTGACCTCAACGAGCCTCCGCCGCTTTGGCTTTGAAA 658
||||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct 576 GTGAGACGTGGGCT-AGCCATTGACCTCAACGAGCCTCCGCCGCTTTGGCTGTGAAA 631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33090691956
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5