BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28370.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473051 jgi|Araly1|473051|fgenesh2_kg.1__3005__AT1G28370.1 1013 0.0
> Ahg473051 jgi|Araly1|473051|fgenesh2_kg.1__3005__AT1G28370.1
Length=831
Score = 1013 bits (548), Expect = 0.0
Identities = 772/871 (89%), Gaps = 51/871 (6%)
Strand=Plus/Plus
Query 53 TTTCTTACATAAACAAATCTTGTTGTTTGTTGTTGTCATGGCACCGACAGTTAAAACGGC 112
|||||||||||||||| | ||||| ||||||||||||||| | |||||||||||||||||
Sbjct 1 TTTCTTACATAAACAATTTTTGTTTTTTGTTGTTGTCATGACGCCGACAGTTAAAACGGC 60
Query 113 GGCCGTCAAAACCAACGAAGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATG 172
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAGTCAAAACCAACGACGGTAACGGAGTCCGTTACAGAGGAGTGAGGAAGAGACCATG 120
Query 173 GGGACGTTACGCAGCCGAGATCAGAGATCCTTTCAAGAAGTCACGTGTCTGGCTCGGTAC 232
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GGGACGTTACGCAGCCGAGATCAGAGATCCTTTCAAGAAGTCACGAGTCTGGCTCGGTAC 180
Query 233 TTTCGACACTCCTGAAGAAGCCGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCGTGG 292
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCGACACTCCTGAAGCAGCGGCTCGTGCCTACGACAAACGTGCTATTGAGTTTCGTGG 240
Query 293 AGCTAAAGCCAAAACCAACTTCCCTTGTTACAACATCAACGCCCACTGCTTGAGTTTGA- 351
||| |||||||||||||| ||||||| ||||| || ||| ||| ||||||||||||
Sbjct 241 AGCCAAAGCCAAAACCAATTTCCCTTATTACAGCAACAA---CCAGAGCTTGAGTTTGAG 297
Query 352 -C--A--CAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCGTTTCCTAATCTCAACCT 406
| | |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 298 CCAGAGCCAGAGCCTGAGCCAGAGCAGCACCGTGGAATCATCGATTCCGGCTCTCAACCT 357
Query 407 CGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGAT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CGGATCTGACTCTGTTAGTTCGAGATTCCCTTTTCCTAAGATTCAGGTTAAGGCTGGGAT 417
Query 467 GATGGTG-TTCGATGAAAGGAGTGAATCGGATTCTTCGTCGGTGGTGATGGATGTCGTTA 525
||||||| || |||||||||||||||||||| || |||||||||||||||||| | |||
Sbjct 418 GATGGTGGTT-GATGAAAGGAGTGAATCGGAATCGTCGTCGGTGGTGATGGAT--C-TTA 473
Query 526 GATATGAAGGACGACGTGTGGTTTTGGACTTGGATCTTAATTTCCCTCCTCCACCTGAGA 585
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 474 GCTATGAAGGACGACGTGTGGTTTTGGACTTGGATCTAAATTTTCCTCCTCCACCTGAGA 533
Query 586 ACTGATTAAGATTTAATTATGATTATTAGATATAATTAAATGTTTCTGAATTGAGTATTA 645
||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 534 ACTAAT-A---TTTAATTATGATTATTAGATATAATTAAATGTTTCTGAATTGAGTACTA 589
Query 646 TTTGATCATCATCTAAGTAGAAGCTTT-AAGTTTAAGTGG-TGCCAATAAtttttttttt 703
||||||||||| ||||||||||||| || ||||||| || ||| | |
Sbjct 590 TTTGATCATCA---AAGTAGAAGCTTTTAATTTTAAGTTTATG----TAAGTGGTGCCAA 642
Query 704 tttttttGGTCATCAGCAGATAGTTTTAAAGAATTTTTTAGTGTTGAGATCGTGTTTCGT 763
||||| | ||||||||||| | ||| ||||||||||| |||||||||||||||||| ||
Sbjct 643 TTTTT--G-TCATCAGCAGA-A-TTTAAAAGAATTTTT-AGTGTTGAGATCGTGTTTTGT 696
Query 764 TC-AGATCTGCTGATGTTCTTTTAAATATCATTAATGATAATCCTGATCAACTAAAATGA 822
|| | |||||||||| | || || | | || ||| | | |||||||||||||| |
Sbjct 697 TCCA-ATCTGCTGAT---CATT-AA-T-T-AT-AAT--T---C-TGATCAACTAAAATAA 741
Query 823 TACTTTGTTTTGGTATTAATCTCTCTGATGAACATATAAGGTTGTTGATCTTATGTTTTT 882
||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 742 TACCTTGTTTTGGCATTGATCTCTCTGATGAACATATATGGTTGTTGATCTTATGATTTT 801
Query 883 TA-CCTATATCCAATTGGATTTGAGGAAATA 912
|| || |||||||||||||||||||||||||
Sbjct 802 TATCC-ATATCCAATTGGATTTGAGGAAATA 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5