BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28375.1
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473052 jgi|Araly1|473052|fgenesh2_kg.1__3006__AT1G28375.1 874 0.0
> Ahg473052 jgi|Araly1|473052|fgenesh2_kg.1__3006__AT1G28375.1
Length=640
Score = 874 bits (473), Expect = 0.0
Identities = 593/647 (92%), Gaps = 23/647 (4%)
Strand=Plus/Plus
Query 1 GCTAGTTTCATAATTATACAAAAACATTAATTTAACAAGATATGAGCTGTAATCCTTTAT 60
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GCTAGTTTCATAATTACACAAAAACATTAATTCAACAAGATATGAGCTGTAATCCTTTAT 60
Query 61 GTAATCTGTTTTTAAATAGCTCAAAATAAGTAGGAGCATCATGCAGATCGTAAGAGTTTT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GTAATCTGTTTTTAAATAGCTCAAAATAGGTAGGAGCATCATGCAGATCGTAAGAGTTTT 120
Query 121 GGA-GATTATGCGTCTTCATGTTTCTAACATGTCTATGGTTCTCATAACTACCTTC--G- 176
| ||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 121 -AATGATAATGCGTCTTCATGTTTCTAGCATGTCTATGGTTCTCATAACTACCTTCATGA 179
Query 177 TTATCGTCATTTTCTCGACCGTAATGGCAAGACCTTCTATCTCTACGAACAAATCTCCAT 236
||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 180 TTATCGTCATTATCTCCACCGTAATGGCAAGACCCTCTATCTCTACGAACAAATTTCAAT 239
Query 237 CTCTAGATTTAGATCCTTCGTTTAGGGTGAAATCCAAGAGCTTTTTACCAAAGTTGTATG 296
||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 240 CTCAAGATTTAGATCCTTCGTTTAGGGTTAAATCCAAGAGCTTTTTACCAAAGCTGTATG 299
Query 297 GCGATTATGGGTTTTGGAACCCAAGCCCGGTTTACGGAGGAGGTTTTCCTTATCCCGGGC 356
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCGACTACGGGTTTTGGAATCCAAGCCCGGTTTACGGAGGAGGTTTTCCTTATCCCGGGC 359
Query 357 CAGTTCCTCATGGCAGTCTAGGTCCAATACAGAGACATAAGAAGCCGAAATGAAACCGGA 416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CAGTTCCTCATGGCAGTCTAGGTCCAAAACAGAGACATAAGAAGCCGAAATGAAACCGGA 419
Query 417 AGATATGTTGGATTGGATGTTCTTCAACTTTGCTACTTACAGGTAAAACTTTTGACATAT 476
||| ||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||||
Sbjct 420 AGACATGTTGGAT---ATGTTCTTCGACTTTGCTACTTACGGGTAAAGCTTTTGATATAT 476
Query 477 GGGTGTTGTATAAATAAGGTAGTGCTGATTAAAGCTTGTGTAGGTACTTACTGCATATGA 536
| |||||||||||||| |||||||| ||||| |||||| || |||||||||||||| ||
Sbjct 477 G--TGTTGTATAAATAACGTAGTGCTAATTAAGGCTTGTATATGTACTTACTGCATACGA 534
Query 537 ATAATGTCATT-GTTTATGTTTTGTAGTAGATACAAATAGTTATATATATA----CACAT 591
|||||||| || |||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 535 ATAATGTC-TTCGTTTGTGTATTGTAGTAGATACAAATAGTTATATATATATATACACAT 593
Query 592 CTTGTTCCACTCTCTA-------GATAAACCATGTATGTGTAGTATA 631
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 594 CTTGTTCCACTCTCTACTCTTTAGATAAACCATGTATGTGTAGTATA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23788700208
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5