BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G28380.1
Length=2202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473053 jgi|Araly1|473053|fgenesh2_kg.1__3007__AT1G28380.1 3404 0.0
Ahg895385 jgi|Araly1|895385|Al_scaffold_0006_3381 857 0.0
Ahg910550 jgi|Araly1|910550|Al_scaffold_0001_804 737 0.0
Ahg359111 jgi|Araly1|359111|fgenesh1_pg.C_scaffold_9000151 737 0.0
Ahg924517 jgi|Araly1|924517|scaffold_200078.1 732 0.0
> Ahg473053 jgi|Araly1|473053|fgenesh2_kg.1__3007__AT1G28380.1
Length=2205
Score = 3404 bits (1843), Expect = 0.0
Identities = 2096/2216 (95%), Gaps = 25/2216 (1%)
Strand=Plus/Plus
Query 1 ACCGTTGACCACTTCAATACCTTCGCGCT--TC-TCTTCTTCTTCACCACCACACACAGC 57
|||||||||||||||||| ||||||||| | ||||||||||| ||||||||| |||
Sbjct 1 ACCGTTGACCACTTCAATGGCTTCGCGCTCGCCTTCTTCTTCTTCTTCACCACACAAAGC 60
Query 58 CACAATCTTTTGAATTTTCCTC--C-TCATCATCGTCTCTCTCCGATCCATGGCCTTTAA 114
|||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 61 CACAATCTTTTGAATTTTCCTCATCATCATCATC-TCTCTCTCCGATCCATGGCCTTTAA 119
Query 115 CAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCTGTAATCGGATT 174
||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||||
Sbjct 120 CAATTTCACACGCCTCGATGCTCAATCCGCCGCCGTGAAAGCCGTCTCAGTGATCGGATT 179
Query 175 AGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACACCCGACGGTTC 234
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 AGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACACCTGACGGTTC 239
Query 235 CAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCCGGTGGTATCGT 294
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||
Sbjct 240 CAGGTTAGTCGAAATCGACCCGACCCGGAACCGTGACTTAGTCTTCCCCGGTGGGATCGT 299
Query 295 CGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGATTACGCTC 354
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGTTAATAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGATTACGCTC 359
Query 355 CGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGG 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGTCTCTCCGG 419
Query 415 GAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGA 474
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGGCCAAAAGA 479
Query 475 TGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTGTATAGTGTAGA 534
|||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 480 TGCGAGCTCTGTCAAGAATTTAGCTTATGATGGTTGGTTCATTAGCTTGTATAGTGTTGA 539
Query 535 GATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAGGTTCCTTCTTCTTG 594
| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GCTTGTTAGGAAGCAATTGACGTTACGTGATGAAGTGAAACGTGAGGTTCCTTCTTCTTG 599
Query 595 GGACTCTGCTGCACTTGCTGGGTTTATTGAGAAATATGGTACTCATGTTGTTGTTGGAGT 654
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GGACTCTGCTTCACTTGCTGGGTTTATTGAGAAATATGGTACTCATGTAGTTGTTGGAGT 659
Query 655 GACTATGGGAGGTAAAGATGTCATTCATGTGAAACAGATGCGTAAATCGAATCATGAGCC 714
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 660 GACTATGGGAGGTAAAGATGTCATTCATGTGAAGCAGATGCGTAAATCGAATCACGAACC 719
Query 715 TGAGGAAATTCAGAAAATGTTGAAGCATTGGGGTGATGAAAGATTTTGTGTTGATCCTGT 774
||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 720 TGATGAAATTCAGAAATTGTTGAAGCGTTGGGGTGATGATAGATTTTGTGTTGATCCTGT 779
Query 775 TGAAAGTAAATCTCCTGCTTCTGTTTATTCAGGGAAGCCAAAGGAGGAGAATCTTC-TAC 833
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 780 TGAAAGTAGATCTCCTGCTTCTGTTTATTCCGGGAAGCCAAAGGAGGAGAATCTTCAT-C 838
Query 834 AATGGGGACTTCAACCGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCATGCATACCAAGA 893
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 839 AATGGGGACTTCAACCGTTTGGTACCTCGGTTAGCTCTGCTGTTGTCACGCACACCAAGA 898
Query 894 ACGAGGAGATTATGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGTCATG 953
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACGAGGAGATTGTGAGGGTTTGTATCAGAAGAGGAGGTGTTGATCTGGGGCAAAGTCATG 958
Query 954 AACGATGGCTCTCAACAGTATCACAAGCACCCAACGTTATATCGATGTGTTTTGTTCCTA 1013
|||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 959 AACGATGGCTCTCAACAGTATCACAATCACCCAACGTCATATCCATGTGTTTTGTTCCTA 1018
Query 1014 TAACTTCACTCTTGAGCGGTCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTAT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TAACTTCACTCTTGAGCGGTCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTAT 1078
Query 1074 ACCTCCGATATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC 1133
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 ACCTCCGATATAAGCCACCGATAGAAGAGTTGCATCAATTTCTTGAGTTTCAACTTCCAC 1138
Query 1134 GCCAATGGGCTCCAGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTCGAAACAAAGTT 1193
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1139 GCCAATGGGCTCCGGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTCAAAACAAAGTT 1198
Query 1194 CTCCATCCCTTCAGTTCTCTTTGATGGGTCCAAAACTATACGTCAACACATCAAAGGTTG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTCCATCCCTTCAGTTCTCTTTGATGGGTCCAAAACTATACGTCAACACATCAAAGGTTG 1258
Query 1254 ATTCAGGTGAGCGACCAGTAACCGGACTACGCTTCTTCCTTGAGGGAAAGAAAGGAAATC 1313
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 ATTCAGGTGAGCGACCAGTAACCGGACTACGCTTCTTCCTTGAGGGGAAGAAAGGAAATC 1318
Query 1314 ATCTAGCAATACATTTGCAGCACCTCTCTGCATGTCCTCCAAGTCTCCATCTCTCACACG 1373
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATCTAGCTATACATTTGCAGCACCTCTCTGCATGTCCTCCAAGTCTCCATCTCTCACACG 1378
Query 1374 ATGACACCTATGAACCCATCGAGGAACCAGTTGAAAAAGGGTATTATGTACCTGTGAAAT 1433
|| | ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1379 ATAAAACCTATGAACCCATCGATGAACCACCTGAAAAAGGGTATTATGTACCTGTGAAAT 1438
Query 1434 GGGGAATATTCTCACACGTTTGCACCTACCCAGTTCAGTACAACGGAGCACGGTCTGATG 1493
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1439 GGGAAATATTCTCACATGTTTGCACCTTCCCAGTTCAGTACAACGGAGCACGGTCTGATG 1498
Query 1494 ACACCGCCTCTATTGTAACCAAAGCCTGGTTAGAAGTGAAAGGAATGGGGATGAGGAAAG 1553
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1499 AAACCGCCTCTATCGTAACCAAAGCCTGGTTAGAAGTCAAAGGAATCGGGATGAGGAAAG 1558
Query 1554 TTCTCTTCTTGAGGCTCGGTTTCTCACTA-GATGCTTCAGCTGTTACACGTAAATCGTGC 1612
|||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||||
Sbjct 1559 TTCTCTTCTTGAGGCTCGATTTCTCGC-ACGATGCTTCAGCTGTTACACGTAAATCGTGC 1617
Query 1613 TGGGACAATCTTTCAACAAACTCGCGCAAATCCGGTGTTTTCTCGATGATCAGTACAAGA 1672
||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1618 TGGGATAATCTTTCAGCAAACTCGCGCAAATCGGGTGTTTTCTCGATGATTAGTACAAGA 1677
Query 1673 CTAAGCACGGGATTAAGTCCAAACCCGGCAACAACTAAGCCACAGTCTAAGATTGATATA 1732
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1678 TTAAGCACGGGTTTAAGTCCAAACCCGGCAACAACGAAGCCACAGTCTAAGATTGATATA 1737
Query 1733 AACTCTGCAGTGTATCCTAGAGGGCCATCACCGCCTGTGAAACCAAAGTTGCTGAGTCTT 1792
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1738 AACTCTGCGGTGTATCCTAGAGGGCCATCGCCGCCTGTGAAACCAAAGCTGCTGAGTCTT 1797
Query 1793 GTAGACACGAAGGAAGTGATGAGAGGTCCAGAGGAACAACCTGGATATTGGGTTGTGACT 1852
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GTAGACACGAAGGAGGTGATGAGAGGTCCAGAGGAACAACCTGGATATTGGGTTGTGACT 1857
Query 1853 GGTGCTAAACTTTGTGTTGAGGCAGGCAAGATCTCAATCAAAGCTAAATACTCTCTGCTC 1912
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1858 GGGGCTAAACTTTGTGTTGAGGCAGGGAAGATCTCAATCAAAGCTAAATACTCTCTGCTT 1917
Query 1913 ACTGTCATATCGGAAGACTCACTGGTCTGAGAGATTCATTTATTCAGTTCCAAATGACAG 1972
|||||||||||||||||||| |||||||||||| |||||| ||| |||||| || |||||
Sbjct 1918 ACTGTCATATCGGAAGACTCGCTGGTCTGAGAGTTTCATTCATTGAGTTCCGAAGGACAG 1977
Query 1973 GGAGGGGTGTCTAAGTAGAG-AACACAAGTGTAGTGTGCGTGT-T-GGATTTT-GACAGA 2028
||||||||||||| || ||| ||||||||||||||||| |||| | || |||| | |||
Sbjct 1978 GGAGGGGTGTCTATGT-GAGGAACACAAGTGTAGTGTGTGTGTGTTGGCTTTTTG-CAGG 2035
Query 2029 TTTCAGTTTGTGATTAGCTTTAATCAGTTGTTTTTGGGTTGTGAACAAA-TTTATTTATC 2087
||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 2036 TTTCAGTTTGTGATTAGCTTTAATCAGGTGTTTTTGGTTTGTGAACAAAATTTATTTATC 2095
Query 2088 TGTTGATGTAAATGTTTCGTTGTATATGATATTGTTGAATTTTACATA-TAGTATATATG 2146
|||||||||||||||||||||||||||||| || | | ||||||||| |||||||| |
Sbjct 2096 TGTTGATGTAAATGTTTCGTTGTATATGATGTT-T--A-TTTTACATAATAGTATAT--G 2149
Query 2147 TATTCGTGTAGAACATATTTGGATGAAATTGAACCAGTTTCATTTTTGTTCTCCTT 2202
||||||||||||||||||||| |||||| |||||| | ||| ||||||||||||||
Sbjct 2150 TATTCGTGTAGAACATATTTGAATGAAACTGAACCGGCTTCGTTTTTGTTCTCCTT 2205
> Ahg895385 jgi|Araly1|895385|Al_scaffold_0006_3381
Length=570
Score = 857 bits (464), Expect = 0.0
Identities = 526/556 (95%), Gaps = 3/556 (1%)
Strand=Plus/Plus
Query 104 ATGGCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCT 163
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCGAGAAAGCCGTCTCA 60
Query 164 GTAATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACA 223
|| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 GTGATCGAATTAGGTTACGATCTCTGCTCTGATGTTCGTTTCTCCGCTTGTAAAACTACA 120
Query 224 CCCGACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCC 283
| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 121 CTAGACGGTTCCAGGTTAGTCGAAATCGACCCGACCCGGAACCGTGACTTAGTCTTCCCC 180
Query 284 GGTGGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT 343
||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 181 GGTGGGATCGTCGTTAACAACGTCTCGAGCTCTATTAAGTGCGATAAAGTTGAACGTACT 240
Query 344 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 300
Query 404 TGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 463
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCTCTCCGGGAAGATTCCGCCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 360
Query 464 TGGCCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTG 523
||||| ||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||
Sbjct 361 TGGCCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTATGATGGTTGGTTCATTAGCTTG 420
Query 524 TATA---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAG 580
|||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 421 TATATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAG 480
Query 581 GTTCCTTCTTCTTGGGACTCTGCTGCACTTGCTGGGTTTATTGAGAAATATGGTACTCAT 640
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 GTTCCTTCTTCTTGGGACTCTGCTTCACTTGCTGGGTTTATTGAGAAATATGGTACTCAT 540
Query 641 GTTGTTGTTGGAGTGA 656
|| |||||||||||||
Sbjct 541 GTAGTTGTTGGAGTGA 556
> Ahg910550 jgi|Araly1|910550|Al_scaffold_0001_804
Length=519
Score = 737 bits (399), Expect = 0.0
Identities = 468/500 (94%), Gaps = 9/500 (2%)
Strand=Plus/Plus
Query 104 ATGGCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCT 163
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1 ATGGCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCAAGAAAGCCGTCTCA 60
Query 164 GTAATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACA 223
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTGATCGGATTAGGTTACTATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACTACA 120
Query 224 CCCGACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCC 283
|| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 121 CCAGACGGTTCCAGGTTAGTCGAAATCGTCCCGACCCGGAACCGTGACTTAGTCTTCCCC 180
Query 284 GGTGGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT 343
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGGATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT 240
Query 344 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 300
Query 404 TGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 463
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCTCTCCTGGAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 360
Query 464 TGGCCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTG 523
||||| ||||||||||||||||| |||| |||||||||| ||||| ||||| |||
Sbjct 361 TGGCCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTAT--TGGTTC----ATTAGCTTG 414
Query 524 TATA---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAG 580
|||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 415 TATATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAG 474
Query 581 GTTCCTTCTTCTTGGGACTC 600
||||||||||||||| ||||
Sbjct 475 GTTCCTTCTTCTTGGTACTC 494
> Ahg359111 jgi|Araly1|359111|fgenesh1_pg.C_scaffold_9000151
Length=519
Score = 737 bits (399), Expect = 0.0
Identities = 468/500 (94%), Gaps = 9/500 (2%)
Strand=Plus/Plus
Query 104 ATGGCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCT 163
||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1 ATGGCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCAAGAAAGCCGTCTCA 60
Query 164 GTAATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACA 223
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GTGATCGGATTAGGTTACTATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACTACA 120
Query 224 CCCGACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCC 283
|| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 121 CCAGACGGTTCCAGGTTAGTCGAAATCGTCCCGACCCGGAACCGTGACTTAGTCTTCCCC 180
Query 284 GGTGGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT 343
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 GGTGGGATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCAAACGTACT 240
Query 344 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 300
Query 404 TGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 463
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTCTCTCCGGGAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 360
Query 464 TGGCCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTG 523
||||| ||||||||||||||||| |||| |||||||||| ||||| ||||| |||
Sbjct 361 TGGCCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTAT--TGGTTC----ATTAGCTTG 414
Query 524 TATA---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAG 580
|||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 415 TATATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAG 474
Query 581 GTTCCTTCTTCTTGGGACTC 600
||||||||||||||| ||||
Sbjct 475 GTTCCTTCTTCTTGGTACTC 494
> Ahg924517 jgi|Araly1|924517|scaffold_200078.1
Length=599
Score = 732 bits (396), Expect = 0.0
Identities = 465/497 (94%), Gaps = 9/497 (2%)
Strand=Plus/Plus
Query 107 GCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCTGTA 166
|||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 63 GCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCAAGAAAGCCGTCTCAGTG 122
Query 167 ATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACACCC 226
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 123 ATCGGATTAGGTTACTATCTCTGCTCCGATGTTTGTTTCTCCGCTTGTAAAACTACACCA 182
Query 227 GACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCCGGT 286
||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct 183 GACGGTTCCAGGTTAGTCGAAATCGTCCCGACCCGGAACCGTGACTTAGTCTTCCCCGGT 242
Query 287 GGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGA 346
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGGATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACTCGA 302
Query 347 TTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATGTGT 362
Query 407 CTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGG 466
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTCTCCGGGAAGATTCCGTCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGTTGG 422
Query 467 CCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTGTAT 526
|| ||||||||||||||||| |||| |||||||||| ||||| ||||| ||||||
Sbjct 423 CCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTAT--TGGTTC----ATTAGCTTGTAT 476
Query 527 A---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAGGTT 583
| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 477 ATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAGGTT 536
Query 584 CCTTCTTCTTGGGACTC 600
|||||||||||| ||||
Sbjct 537 CCTTCTTCTTGGTACTC 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82884373120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5